Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Is arboreto applicable to bulk RNA-Seq #31

Open
ZhangDengwei opened this issue Sep 12, 2022 · 0 comments
Open

Is arboreto applicable to bulk RNA-Seq #31

ZhangDengwei opened this issue Sep 12, 2022 · 0 comments

Comments

@ZhangDengwei
Copy link

I understand the arboreto is designed for single-cell RNA-Seq, but how about the bulk RNAS-Seq data? If I apply arboreto to bulk RNA-Seq data set, is the result credible? Also, I am not familiar with this algorithm, what can I tell from the arboreto output, what is the meaning of importance between TF and target, and what threshold can be regarded as a valid regulation of TF against the target gene? Thanks in advance!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant