benchmark_results.txt

Create index for data at 1MB resolution, all chromosomes
Not including fragment map
Start preprocess
Writing header
Writing body
......................................................................................................................................................................................................................................................................................................................................
Writing footer

Finished preprocess

Calculating contact matrices took: 1401464 milliseconds
HiC file version: 8
INFO [2016-08-05 19:15:24,594]  [DatasetReaderV2.java:449] [main]  No normalization vectors

Calculating norms for zoom BP_1000000
VC normalization of 1 at BP_1000000 took 31 milliseconds
KR normalization of 1 at BP_1000000 took 38 milliseconds

VC normalization of 2 at BP_1000000 took 23 milliseconds
KR normalization of 2 at BP_1000000 took 28 milliseconds

VC normalization of 3 at BP_1000000 took 13 milliseconds
KR normalization of 3 at BP_1000000 took 13 milliseconds

VC normalization of 4 at BP_1000000 took 6 milliseconds
KR normalization of 4 at BP_1000000 took 11 milliseconds

VC normalization of 5 at BP_1000000 took 6 milliseconds
KR normalization of 5 at BP_1000000 took 9 milliseconds

VC normalization of 6 at BP_1000000 took 3 milliseconds
KR normalization of 6 at BP_1000000 took 8 milliseconds

VC normalization of 7 at BP_1000000 took 5 milliseconds
KR normalization of 7 at BP_1000000 took 6 milliseconds

VC normalization of 8 at BP_1000000 took 4 milliseconds
KR normalization of 8 at BP_1000000 took 5 milliseconds

VC normalization of 9 at BP_1000000 took 2 milliseconds
KR normalization of 9 at BP_1000000 took 4 milliseconds

VC normalization of 10 at BP_1000000 took 4 milliseconds
KR normalization of 10 at BP_1000000 took 4 milliseconds

VC normalization of 11 at BP_1000000 took 2 milliseconds
KR normalization of 11 at BP_1000000 took 5 milliseconds

VC normalization of 12 at BP_1000000 took 3 milliseconds
KR normalization of 12 at BP_1000000 took 2 milliseconds

VC normalization of 13 at BP_1000000 took 3 milliseconds
KR normalization of 13 at BP_1000000 took 1 milliseconds

VC normalization of 14 at BP_1000000 took 1 milliseconds
KR normalization of 14 at BP_1000000 took 1 milliseconds

VC normalization of 15 at BP_1000000 took 1 milliseconds
KR normalization of 15 at BP_1000000 took 1 milliseconds

VC normalization of 16 at BP_1000000 took 1 milliseconds
KR normalization of 16 at BP_1000000 took 1 milliseconds

VC normalization of 17 at BP_1000000 took 1 milliseconds
KR normalization of 17 at BP_1000000 took 1 milliseconds

VC normalization of 18 at BP_1000000 took 1 milliseconds
KR normalization of 18 at BP_1000000 took 2 milliseconds

VC normalization of 19 at BP_1000000 took 0 milliseconds
KR normalization of 19 at BP_1000000 took 1 milliseconds

VC normalization of 20 at BP_1000000 took 1 milliseconds
KR normalization of 20 at BP_1000000 took 1 milliseconds

VC normalization of 21 at BP_1000000 took 0 milliseconds
KR normalization of 21 at BP_1000000 took 1 milliseconds

VC normalization of 22 at BP_1000000 took 0 milliseconds
KR normalization of 22 at BP_1000000 took 1 milliseconds

VC normalization of X at BP_1000000 took 3 milliseconds
KR normalization of X at BP_1000000 took 3 milliseconds

VC normalization of Y at BP_1000000 took 0 milliseconds
KR normalization of Y at BP_1000000 took 3 milliseconds

VC normalization of MT at BP_1000000 took 0 milliseconds
KR normalization of MT at BP_1000000 took 0 milliseconds

Writing expected
Writing norms
Finished writing norms

real	23m22.827s
user	23m15.017s
sys	0m32.101s
Create index for data at all resolutions, all chromosomes
Not including fragment map
Start preprocess
Writing header
Writing body
......................................................................................................................................................................................................................................................................................................................................
Writing footer

Finished preprocess

Calculating contact matrices took: 3631158 milliseconds
HiC file version: 8
INFO [2016-08-05 20:15:57,266]  [DatasetReaderV2.java:449] [main]  No normalization vectors

Calculating norms for zoom BP_2500000
VC normalization of 1 at BP_2500000 took 7 milliseconds
KR normalization of 1 at BP_2500000 took 15 milliseconds

VC normalization of 2 at BP_2500000 took 5 milliseconds
KR normalization of 2 at BP_2500000 took 10 milliseconds

VC normalization of 3 at BP_2500000 took 31 milliseconds
KR normalization of 3 at BP_2500000 took 4 milliseconds

VC normalization of 4 at BP_2500000 took 3 milliseconds
KR normalization of 4 at BP_2500000 took 4 milliseconds

VC normalization of 5 at BP_2500000 took 3 milliseconds
KR normalization of 5 at BP_2500000 took 2 milliseconds

VC normalization of 6 at BP_2500000 took 1 milliseconds
KR normalization of 6 at BP_2500000 took 2 milliseconds

VC normalization of 7 at BP_2500000 took 1 milliseconds
KR normalization of 7 at BP_2500000 took 2 milliseconds

VC normalization of 8 at BP_2500000 took 1 milliseconds
KR normalization of 8 at BP_2500000 took 2 milliseconds

VC normalization of 9 at BP_2500000 took 1 milliseconds
KR normalization of 9 at BP_2500000 took 1 milliseconds

VC normalization of 10 at BP_2500000 took 2 milliseconds
KR normalization of 10 at BP_2500000 took 2 milliseconds

VC normalization of 11 at BP_2500000 took 2 milliseconds
KR normalization of 11 at BP_2500000 took 1 milliseconds

VC normalization of 12 at BP_2500000 took 2 milliseconds
KR normalization of 12 at BP_2500000 took 2 milliseconds

VC normalization of 13 at BP_2500000 took 1 milliseconds
KR normalization of 13 at BP_2500000 took 1 milliseconds

VC normalization of 14 at BP_2500000 took 1 milliseconds
KR normalization of 14 at BP_2500000 took 1 milliseconds

VC normalization of 15 at BP_2500000 took 0 milliseconds
KR normalization of 15 at BP_2500000 took 1 milliseconds

VC normalization of 16 at BP_2500000 took 0 milliseconds
KR normalization of 16 at BP_2500000 took 0 milliseconds

VC normalization of 17 at BP_2500000 took 0 milliseconds
KR normalization of 17 at BP_2500000 took 1 milliseconds

VC normalization of 18 at BP_2500000 took 1 milliseconds
KR normalization of 18 at BP_2500000 took 0 milliseconds

VC normalization of 19 at BP_2500000 took 0 milliseconds
KR normalization of 19 at BP_2500000 took 1 milliseconds

VC normalization of 20 at BP_2500000 took 1 milliseconds
KR normalization of 20 at BP_2500000 took 0 milliseconds

VC normalization of 21 at BP_2500000 took 0 milliseconds
KR normalization of 21 at BP_2500000 took 1 milliseconds

VC normalization of 22 at BP_2500000 took 1 milliseconds
KR normalization of 22 at BP_2500000 took 0 milliseconds

VC normalization of X at BP_2500000 took 2 milliseconds
KR normalization of X at BP_2500000 took 2 milliseconds

VC normalization of Y at BP_2500000 took 0 milliseconds
KR normalization of Y at BP_2500000 took 1 milliseconds

VC normalization of MT at BP_2500000 took 0 milliseconds
KR normalization of MT at BP_2500000 took 0 milliseconds

Calculating norms for zoom BP_1000000
VC normalization of 1 at BP_1000000 took 14 milliseconds
KR normalization of 1 at BP_1000000 took 18 milliseconds

VC normalization of 2 at BP_1000000 took 14 milliseconds
KR normalization of 2 at BP_1000000 took 13 milliseconds

VC normalization of 3 at BP_1000000 took 5 milliseconds
KR normalization of 3 at BP_1000000 took 11 milliseconds

VC normalization of 4 at BP_1000000 took 5 milliseconds
KR normalization of 4 at BP_1000000 took 8 milliseconds

VC normalization of 5 at BP_1000000 took 5 milliseconds
KR normalization of 5 at BP_1000000 took 4 milliseconds

VC normalization of 6 at BP_1000000 took 4 milliseconds
KR normalization of 6 at BP_1000000 took 6 milliseconds

VC normalization of 7 at BP_1000000 took 4 milliseconds
KR normalization of 7 at BP_1000000 took 6 milliseconds

VC normalization of 8 at BP_1000000 took 2 milliseconds
KR normalization of 8 at BP_1000000 took 3 milliseconds

VC normalization of 9 at BP_1000000 took 4 milliseconds
KR normalization of 9 at BP_1000000 took 4 milliseconds

VC normalization of 10 at BP_1000000 took 4 milliseconds
KR normalization of 10 at BP_1000000 took 3 milliseconds

VC normalization of 11 at BP_1000000 took 2 milliseconds
KR normalization of 11 at BP_1000000 took 3 milliseconds

VC normalization of 12 at BP_1000000 took 2 milliseconds
KR normalization of 12 at BP_1000000 took 2 milliseconds

VC normalization of 13 at BP_1000000 took 1 milliseconds
KR normalization of 13 at BP_1000000 took 1 milliseconds

VC normalization of 14 at BP_1000000 took 1 milliseconds
KR normalization of 14 at BP_1000000 took 2 milliseconds

VC normalization of 15 at BP_1000000 took 0 milliseconds
KR normalization of 15 at BP_1000000 took 2 milliseconds

VC normalization of 16 at BP_1000000 took 0 milliseconds
KR normalization of 16 at BP_1000000 took 1 milliseconds

VC normalization of 17 at BP_1000000 took 1 milliseconds
KR normalization of 17 at BP_1000000 took 2 milliseconds

VC normalization of 18 at BP_1000000 took 1 milliseconds
KR normalization of 18 at BP_1000000 took 2 milliseconds

VC normalization of 19 at BP_1000000 took 0 milliseconds
KR normalization of 19 at BP_1000000 took 1 milliseconds

VC normalization of 20 at BP_1000000 took 1 milliseconds
KR normalization of 20 at BP_1000000 took 0 milliseconds

VC normalization of 21 at BP_1000000 took 0 milliseconds
KR normalization of 21 at BP_1000000 took 0 milliseconds

VC normalization of 22 at BP_1000000 took 0 milliseconds
KR normalization of 22 at BP_1000000 took 0 milliseconds

VC normalization of X at BP_1000000 took 3 milliseconds
KR normalization of X at BP_1000000 took 4 milliseconds

VC normalization of Y at BP_1000000 took 0 milliseconds
KR normalization of Y at BP_1000000 took 3 milliseconds

VC normalization of MT at BP_1000000 took 0 milliseconds
KR normalization of MT at BP_1000000 took 0 milliseconds

Calculating norms for zoom BP_500000
VC normalization of 1 at BP_500000 took 25 milliseconds
KR normalization of 1 at BP_500000 took 31 milliseconds

VC normalization of 2 at BP_500000 took 26 milliseconds
KR normalization of 2 at BP_500000 took 58 milliseconds

VC normalization of 3 at BP_500000 took 15 milliseconds
KR normalization of 3 at BP_500000 took 20 milliseconds

VC normalization of 4 at BP_500000 took 15 milliseconds
KR normalization of 4 at BP_500000 took 17 milliseconds

VC normalization of 5 at BP_500000 took 12 milliseconds
KR normalization of 5 at BP_500000 took 15 milliseconds

VC normalization of 6 at BP_500000 took 11 milliseconds
KR normalization of 6 at BP_500000 took 14 milliseconds

VC normalization of 7 at BP_500000 took 9 milliseconds
KR normalization of 7 at BP_500000 took 14 milliseconds

VC normalization of 8 at BP_500000 took 8 milliseconds
KR normalization of 8 at BP_500000 took 10 milliseconds

VC normalization of 9 at BP_500000 took 6 milliseconds
KR normalization of 9 at BP_500000 took 12 milliseconds

VC normalization of 10 at BP_500000 took 7 milliseconds
KR normalization of 10 at BP_500000 took 8 milliseconds

VC normalization of 11 at BP_500000 took 5 milliseconds
KR normalization of 11 at BP_500000 took 8 milliseconds

VC normalization of 12 at BP_500000 took 4 milliseconds
KR normalization of 12 at BP_500000 took 8 milliseconds

VC normalization of 13 at BP_500000 took 3 milliseconds
KR normalization of 13 at BP_500000 took 4 milliseconds

VC normalization of 14 at BP_500000 took 2 milliseconds
KR normalization of 14 at BP_500000 took 4 milliseconds

VC normalization of 15 at BP_500000 took 2 milliseconds
KR normalization of 15 at BP_500000 took 3 milliseconds

VC normalization of 16 at BP_500000 took 2 milliseconds
KR normalization of 16 at BP_500000 took 3 milliseconds

VC normalization of 17 at BP_500000 took 1 milliseconds
KR normalization of 17 at BP_500000 took 3 milliseconds

VC normalization of 18 at BP_500000 took 2 milliseconds
KR normalization of 18 at BP_500000 took 2 milliseconds

VC normalization of 19 at BP_500000 took 1 milliseconds
KR normalization of 19 at BP_500000 took 1 milliseconds

VC normalization of 20 at BP_500000 took 1 milliseconds
KR normalization of 20 at BP_500000 took 2 milliseconds

VC normalization of 21 at BP_500000 took 0 milliseconds
KR normalization of 21 at BP_500000 took 1 milliseconds

VC normalization of 22 at BP_500000 took 0 milliseconds
KR normalization of 22 at BP_500000 took 1 milliseconds

VC normalization of X at BP_500000 took 6 milliseconds
KR normalization of X at BP_500000 took 13 milliseconds

VC normalization of Y at BP_500000 took 0 milliseconds
KR normalization of Y at BP_500000 took 11 milliseconds

VC normalization of MT at BP_500000 took 0 milliseconds
KR normalization of MT at BP_500000 took 0 milliseconds

Calculating norms for zoom BP_250000
VC normalization of 1 at BP_250000 took 48 milliseconds
KR normalization of 1 at BP_250000 took 93 milliseconds

VC normalization of 2 at BP_250000 took 55 milliseconds
KR normalization of 2 at BP_250000 took 165 milliseconds

VC normalization of 3 at BP_250000 took 36 milliseconds
KR normalization of 3 at BP_250000 took 63 milliseconds

VC normalization of 4 at BP_250000 took 33 milliseconds
KR normalization of 4 at BP_250000 took 63 milliseconds

VC normalization of 5 at BP_250000 took 31 milliseconds
KR normalization of 5 at BP_250000 took 51 milliseconds

VC normalization of 6 at BP_250000 took 27 milliseconds
KR normalization of 6 at BP_250000 took 47 milliseconds

VC normalization of 7 at BP_250000 took 24 milliseconds
KR normalization of 7 at BP_250000 took 40 milliseconds

VC normalization of 8 at BP_250000 took 20 milliseconds
KR normalization of 8 at BP_250000 took 33 milliseconds

VC normalization of 9 at BP_250000 took 14 milliseconds
KR normalization of 9 at BP_250000 took 37 milliseconds

VC normalization of 10 at BP_250000 took 18 milliseconds
KR normalization of 10 at BP_250000 took 31 milliseconds

VC normalization of 11 at BP_250000 took 17 milliseconds
KR normalization of 11 at BP_250000 took 28 milliseconds

VC normalization of 12 at BP_250000 took 17 milliseconds
KR normalization of 12 at BP_250000 took 28 milliseconds

VC normalization of 13 at BP_250000 took 9 milliseconds
KR normalization of 13 at BP_250000 took 15 milliseconds

VC normalization of 14 at BP_250000 took 8 milliseconds
KR normalization of 14 at BP_250000 took 13 milliseconds

VC normalization of 15 at BP_250000 took 6 milliseconds
KR normalization of 15 at BP_250000 took 12 milliseconds

VC normalization of 16 at BP_250000 took 7 milliseconds
KR normalization of 16 at BP_250000 took 11 milliseconds

VC normalization of 17 at BP_250000 took 6 milliseconds
KR normalization of 17 at BP_250000 took 10 milliseconds

VC normalization of 18 at BP_250000 took 6 milliseconds
KR normalization of 18 at BP_250000 took 9 milliseconds

VC normalization of 19 at BP_250000 took 4 milliseconds
KR normalization of 19 at BP_250000 took 5 milliseconds

VC normalization of 20 at BP_250000 took 4 milliseconds
KR normalization of 20 at BP_250000 took 6 milliseconds

VC normalization of 21 at BP_250000 took 1 milliseconds
KR normalization of 21 at BP_250000 took 2 milliseconds

VC normalization of 22 at BP_250000 took 2 milliseconds
KR normalization of 22 at BP_250000 took 2 milliseconds

VC normalization of X at BP_250000 took 23 milliseconds
KR normalization of X at BP_250000 took 61 milliseconds

VC normalization of Y at BP_250000 took 0 milliseconds
KR normalization of Y at BP_250000 took 16 milliseconds

VC normalization of MT at BP_250000 took 0 milliseconds
KR normalization of MT at BP_250000 took 0 milliseconds

Calculating norms for zoom BP_100000
VC normalization of 1 at BP_100000 took 267 milliseconds
KR normalization of 1 at BP_100000 took 612 milliseconds

VC normalization of 2 at BP_100000 took 236 milliseconds
KR normalization of 2 at BP_100000 took 737 milliseconds

VC normalization of 3 at BP_100000 took 160 milliseconds
KR normalization of 3 at BP_100000 took 266 milliseconds

VC normalization of 4 at BP_100000 took 132 milliseconds
KR normalization of 4 at BP_100000 took 241 milliseconds

VC normalization of 5 at BP_100000 took 158 milliseconds
KR normalization of 5 at BP_100000 took 229 milliseconds

VC normalization of 6 at BP_100000 took 117 milliseconds
KR normalization of 6 at BP_100000 took 334 milliseconds

VC normalization of 7 at BP_100000 took 102 milliseconds
KR normalization of 7 at BP_100000 took 297 milliseconds

VC normalization of 8 at BP_100000 took 116 milliseconds
KR normalization of 8 at BP_100000 took 274 milliseconds

VC normalization of 9 at BP_100000 took 61 milliseconds
KR normalization of 9 at BP_100000 took 185 milliseconds

VC normalization of 10 at BP_100000 took 77 milliseconds
KR normalization of 10 at BP_100000 took 235 milliseconds

VC normalization of 11 at BP_100000 took 77 milliseconds
KR normalization of 11 at BP_100000 took 444 milliseconds

VC normalization of 12 at BP_100000 took 77 milliseconds
KR normalization of 12 at BP_100000 took 158 milliseconds

VC normalization of 13 at BP_100000 took 46 milliseconds
KR normalization of 13 at BP_100000 took 83 milliseconds

VC normalization of 14 at BP_100000 took 38 milliseconds
KR normalization of 14 at BP_100000 took 65 milliseconds

VC normalization of 15 at BP_100000 took 32 milliseconds
KR normalization of 15 at BP_100000 took 90 milliseconds

VC normalization of 16 at BP_100000 took 34 milliseconds
KR normalization of 16 at BP_100000 took 58 milliseconds

VC normalization of 17 at BP_100000 took 31 milliseconds
KR normalization of 17 at BP_100000 took 52 milliseconds

VC normalization of 18 at BP_100000 took 29 milliseconds
KR normalization of 18 at BP_100000 took 52 milliseconds

VC normalization of 19 at BP_100000 took 15 milliseconds
KR normalization of 19 at BP_100000 took 27 milliseconds

VC normalization of 20 at BP_100000 took 19 milliseconds
KR normalization of 20 at BP_100000 took 33 milliseconds

VC normalization of 21 at BP_100000 took 7 milliseconds
KR normalization of 21 at BP_100000 took 11 milliseconds

VC normalization of 22 at BP_100000 took 6 milliseconds
KR normalization of 22 at BP_100000 took 12 milliseconds

VC normalization of X at BP_100000 took 104 milliseconds
KR normalization of X at BP_100000 took 344 milliseconds

VC normalization of Y at BP_100000 took 0 milliseconds
KR normalization of Y at BP_100000 took 19 milliseconds

VC normalization of MT at BP_100000 took 0 milliseconds
KR normalization of MT at BP_100000 took 0 milliseconds

Calculating norms for zoom BP_50000
VC normalization of 1 at BP_50000 took 401 milliseconds
KR normalization of 1 at BP_50000 took 1908 milliseconds

VC normalization of 2 at BP_50000 took 563 milliseconds
KR normalization of 2 at BP_50000 took 2715 milliseconds

VC normalization of 3 at BP_50000 took 357 milliseconds
KR normalization of 3 at BP_50000 took 993 milliseconds

VC normalization of 4 at BP_50000 took 293 milliseconds
KR normalization of 4 at BP_50000 took 549 milliseconds

VC normalization of 5 at BP_50000 took 360 milliseconds
KR normalization of 5 at BP_50000 took 912 milliseconds

VC normalization of 6 at BP_50000 took 272 milliseconds
KR normalization of 6 at BP_50000 took 846 milliseconds

VC normalization of 7 at BP_50000 took 233 milliseconds
KR normalization of 7 at BP_50000 took 701 milliseconds

VC normalization of 8 at BP_50000 took 220 milliseconds
KR normalization of 8 at BP_50000 took 640 milliseconds

VC normalization of 9 at BP_50000 took 138 milliseconds
KR normalization of 9 at BP_50000 took 1045 milliseconds

VC normalization of 10 at BP_50000 took 204 milliseconds
KR normalization of 10 at BP_50000 took 624 milliseconds

VC normalization of 11 at BP_50000 took 209 milliseconds
KR normalization of 11 at BP_50000 took 1066 milliseconds

VC normalization of 12 at BP_50000 took 179 milliseconds
KR normalization of 12 at BP_50000 took 542 milliseconds

VC normalization of 13 at BP_50000 took 113 milliseconds
KR normalization of 13 at BP_50000 took 200 milliseconds

VC normalization of 14 at BP_50000 took 106 milliseconds
KR normalization of 14 at BP_50000 took 193 milliseconds

VC normalization of 15 at BP_50000 took 89 milliseconds
KR normalization of 15 at BP_50000 took 260 milliseconds

VC normalization of 16 at BP_50000 took 82 milliseconds
KR normalization of 16 at BP_50000 took 237 milliseconds

VC normalization of 17 at BP_50000 took 89 milliseconds
KR normalization of 17 at BP_50000 took 244 milliseconds

VC normalization of 18 at BP_50000 took 88 milliseconds
KR normalization of 18 at BP_50000 took 153 milliseconds

VC normalization of 19 at BP_50000 took 55 milliseconds
KR normalization of 19 at BP_50000 took 84 milliseconds

VC normalization of 20 at BP_50000 took 55 milliseconds
KR normalization of 20 at BP_50000 took 99 milliseconds

VC normalization of 21 at BP_50000 took 21 milliseconds
KR normalization of 21 at BP_50000 took 57 milliseconds

VC normalization of 22 at BP_50000 took 21 milliseconds
KR normalization of 22 at BP_50000 took 36 milliseconds

VC normalization of X at BP_50000 took 244 milliseconds
KR normalization of X at BP_50000 took 1674 milliseconds

VC normalization of Y at BP_50000 took 0 milliseconds
KR normalization of Y at BP_50000 took 36 milliseconds

VC normalization of MT at BP_50000 took 0 milliseconds
KR normalization of MT at BP_50000 took 0 milliseconds

Calculating norms for zoom BP_25000
VC normalization of 1 at BP_25000 took 668 milliseconds
KR normalization of 1 at BP_25000 took 5447 milliseconds

VC normalization of 2 at BP_25000 took 738 milliseconds
KR normalization of 2 at BP_25000 took 5646 milliseconds

VC normalization of 3 at BP_25000 took 568 milliseconds
KR normalization of 3 at BP_25000 took 1580 milliseconds

VC normalization of 4 at BP_25000 took 501 milliseconds
KR normalization of 4 at BP_25000 took 2822 milliseconds

VC normalization of 5 at BP_25000 took 588 milliseconds
KR normalization of 5 at BP_25000 took 3364 milliseconds

VC normalization of 6 at BP_25000 took 567 milliseconds
KR normalization of 6 at BP_25000 took 2617 milliseconds

VC normalization of 7 at BP_25000 took 407 milliseconds
KR normalization of 7 at BP_25000 took 1271 milliseconds

VC normalization of 8 at BP_25000 took 394 milliseconds
KR normalization of 8 at BP_25000 took 2071 milliseconds

VC normalization of 9 at BP_25000 took 312 milliseconds
KR normalization of 9 at BP_25000 took 2367 milliseconds

VC normalization of 10 at BP_25000 took 344 milliseconds
KR normalization of 10 at BP_25000 took 4327 milliseconds

VC normalization of 11 at BP_25000 took 351 milliseconds
KR normalization of 11 at BP_25000 took 1839 milliseconds

VC normalization of 12 at BP_25000 took 329 milliseconds
KR normalization of 12 at BP_25000 took 2061 milliseconds

VC normalization of 13 at BP_25000 took 211 milliseconds
KR normalization of 13 at BP_25000 took 406 milliseconds

VC normalization of 14 at BP_25000 took 191 milliseconds
KR normalization of 14 at BP_25000 took 329 milliseconds

VC normalization of 15 at BP_25000 took 166 milliseconds
KR normalization of 15 at BP_25000 took 1188 milliseconds

VC normalization of 16 at BP_25000 took 205 milliseconds
KR normalization of 16 at BP_25000 took 499 milliseconds

VC normalization of 17 at BP_25000 took 152 milliseconds
KR normalization of 17 at BP_25000 took 460 milliseconds

VC normalization of 18 at BP_25000 took 169 milliseconds
KR normalization of 18 at BP_25000 took 281 milliseconds

VC normalization of 19 at BP_25000 took 134 milliseconds
KR normalization of 19 at BP_25000 took 316 milliseconds

VC normalization of 20 at BP_25000 took 123 milliseconds
KR normalization of 20 at BP_25000 took 333 milliseconds

VC normalization of 21 at BP_25000 took 48 milliseconds
KR normalization of 21 at BP_25000 took 145 milliseconds

VC normalization of 22 at BP_25000 took 52 milliseconds
KR normalization of 22 at BP_25000 took 156 milliseconds

VC normalization of X at BP_25000 took 531 milliseconds
KR normalization of X at BP_25000 took 3190 milliseconds

VC normalization of Y at BP_25000 took 0 milliseconds
KR normalization of Y at BP_25000 took 13 milliseconds

VC normalization of MT at BP_25000 took 0 milliseconds
KR normalization of MT at BP_25000 took 0 milliseconds

Calculating norms for zoom BP_10000
VC normalization of 1 at BP_10000 took 1056 milliseconds
KR normalization of 1 at BP_10000 took 10978 milliseconds

VC normalization of 2 at BP_10000 took 1379 milliseconds
KR normalization of 2 at BP_10000 took 10188 milliseconds

VC normalization of 3 at BP_10000 took 898 milliseconds
KR normalization of 3 at BP_10000 took 5170 milliseconds

VC normalization of 4 at BP_10000 took 763 milliseconds
KR normalization of 4 at BP_10000 took 5622 milliseconds

VC normalization of 5 at BP_10000 took 945 milliseconds
KR normalization of 5 at BP_10000 took 6936 milliseconds

VC normalization of 6 at BP_10000 took 724 milliseconds
KR normalization of 6 at BP_10000 took 5425 milliseconds

VC normalization of 7 at BP_10000 took 652 milliseconds
KR normalization of 7 at BP_10000 took 5173 milliseconds

VC normalization of 8 at BP_10000 took 601 milliseconds
KR normalization of 8 at BP_10000 took 4892 milliseconds

VC normalization of 9 at BP_10000 took 421 milliseconds
KR normalization of 9 at BP_10000 took 9507 milliseconds

VC normalization of 10 at BP_10000 took 714 milliseconds
KR normalization of 10 at BP_10000 took 4807 milliseconds

VC normalization of 11 at BP_10000 took 724 milliseconds
KR normalization of 11 at BP_10000 took 3476 milliseconds

VC normalization of 12 at BP_10000 took 550 milliseconds
KR normalization of 12 at BP_10000 took 4078 milliseconds

VC normalization of 13 at BP_10000 took 430 milliseconds
KR normalization of 13 at BP_10000 took 966 milliseconds

VC normalization of 14 at BP_10000 took 330 milliseconds
KR normalization of 14 at BP_10000 took 945 milliseconds

VC normalization of 15 at BP_10000 took 296 milliseconds
KR normalization of 15 at BP_10000 took 2661 milliseconds

VC normalization of 16 at BP_10000 took 361 milliseconds
KR normalization of 16 at BP_10000 took 2406 milliseconds

VC normalization of 17 at BP_10000 took 288 milliseconds
KR normalization of 17 at BP_10000 took 902 milliseconds

VC normalization of 18 at BP_10000 took 358 milliseconds
KR normalization of 18 at BP_10000 took 456 milliseconds

VC normalization of 19 at BP_10000 took 198 milliseconds
KR normalization of 19 at BP_10000 took 1235 milliseconds

VC normalization of 20 at BP_10000 took 224 milliseconds
KR normalization of 20 at BP_10000 took 1299 milliseconds

VC normalization of 21 at BP_10000 took 101 milliseconds
KR normalization of 21 at BP_10000 took 753 milliseconds

VC normalization of 22 at BP_10000 took 106 milliseconds
KR normalization of 22 at BP_10000 took 641 milliseconds

VC normalization of X at BP_10000 took 832 milliseconds
KR normalization of X at BP_10000 took 5439 milliseconds

VC normalization of Y at BP_10000 took 1 milliseconds
KR normalization of Y at BP_10000 took 7 milliseconds

VC normalization of MT at BP_10000 took 0 milliseconds
KR normalization of MT at BP_10000 took 0 milliseconds

Calculating norms for zoom BP_5000
VC normalization of 1 at BP_5000 took 1798 milliseconds
KR normalization of 1 at BP_5000 took 29756 milliseconds

VC normalization of 2 at BP_5000 took 1540 milliseconds
KR normalization of 2 at BP_5000 took 14790 milliseconds

VC normalization of 3 at BP_5000 took 1501 milliseconds
KR normalization of 3 at BP_5000 took 9003 milliseconds

VC normalization of 4 at BP_5000 took 1048 milliseconds
KR normalization of 4 at BP_5000 took 7775 milliseconds

VC normalization of 5 at BP_5000 took 1302 milliseconds
KR normalization of 5 at BP_5000 took 9808 milliseconds

VC normalization of 6 at BP_5000 took 1237 milliseconds
KR normalization of 6 at BP_5000 took 7614 milliseconds

VC normalization of 7 at BP_5000 took 1093 milliseconds
KR normalization of 7 at BP_5000 took 23949 milliseconds

VC normalization of 8 at BP_5000 took 1056 milliseconds
KR normalization of 8 at BP_5000 took 6877 milliseconds

VC normalization of 9 at BP_5000 took 743 milliseconds
KR normalization of 9 at BP_5000 took 14657 milliseconds

VC normalization of 10 at BP_5000 took 785 milliseconds
KR normalization of 10 at BP_5000 took 7910 milliseconds

VC normalization of 11 at BP_5000 took 817 milliseconds
KR normalization of 11 at BP_5000 took 7389 milliseconds

VC normalization of 12 at BP_5000 took 763 milliseconds
KR normalization of 12 at BP_5000 took 6143 milliseconds

VC normalization of 13 at BP_5000 took 472 milliseconds
KR normalization of 13 at BP_5000 took 2989 milliseconds

VC normalization of 14 at BP_5000 took 466 milliseconds
KR normalization of 14 at BP_5000 took 3316 milliseconds

VC normalization of 15 at BP_5000 took 434 milliseconds
KR normalization of 15 at BP_5000 took 4682 milliseconds

VC normalization of 16 at BP_5000 took 439 milliseconds
KR normalization of 16 at BP_5000 took 4385 milliseconds

VC normalization of 17 at BP_5000 took 408 milliseconds
KR normalization of 17 at BP_5000 took 3336 milliseconds

VC normalization of 18 at BP_5000 took 402 milliseconds
KR normalization of 18 at BP_5000 took 650 milliseconds

VC normalization of 19 at BP_5000 took 305 milliseconds
KR normalization of 19 at BP_5000 took 2423 milliseconds

VC normalization of 20 at BP_5000 took 420 milliseconds
KR normalization of 20 at BP_5000 took 2256 milliseconds

VC normalization of 21 at BP_5000 took 146 milliseconds
KR normalization of 21 at BP_5000 took 1402 milliseconds

VC normalization of 22 at BP_5000 took 168 milliseconds
KR normalization of 22 at BP_5000 took 1539 milliseconds

VC normalization of X at BP_5000 took 1085 milliseconds
KR normalization of X at BP_5000 took 8820 milliseconds

VC normalization of Y at BP_5000 took 1 milliseconds
KR normalization of Y at BP_5000 took 12 milliseconds

VC normalization of MT at BP_5000 took 0 milliseconds
KR normalization of MT at BP_5000 took 0 milliseconds

Writing expected
Writing norms
Finished writing norms

real	67m40.786s
user	85m12.185s
sys	1m15.234s
Querying: 256x256 / 2048x2048 / slices / single resolution no norm
HiC file version: 8
Average time to query 256x256: 2 milliseconds
Average time to query 2048x2048: 2 milliseconds
Average time to query 1000 rows: 6 milliseconds
Average time to query 1000 columns: 4 milliseconds
Average time to query 1000 diagonal entries: 3 milliseconds
Querying: 256x256 / 2048x2048 / slices / single resolution balanced norm
HiC file version: 8
Average time to query 256x256: 3 milliseconds
Average time to query 2048x2048: 3 milliseconds
Average time to query 1000 rows: 7 milliseconds
Average time to query 1000 columns: 5 milliseconds
Average time to query 1000 diagonal entries: 9 milliseconds
Querying: 256x256 / 2048x2048 / slices / multiple resolution no norm
HiC file version: 8
Average time to query 256x256: 12 milliseconds
Average time to query 2048x2048: 62 milliseconds
Average time to query 1000 rows: 2 milliseconds
Average time to query 1000 columns: 2 milliseconds
Average time to query 1000 diagonal entries: 24 milliseconds
Querying: 256x256 / 2048x2048 / slices / multiple resolution balanced norm
HiC file version: 8
Average time to query 256x256: 17 milliseconds
Average time to query 2048x2048: 105 milliseconds
Average time to query 1000 rows: 3 milliseconds
Average time to query 1000 columns: 4 milliseconds
Average time to query 1000 diagonal entries: 21 milliseconds
Query without loading index 2048x2048....ten times

real	0m0.466s
user	0m0.371s
sys	0m0.025s

real	0m0.336s
user	0m0.303s
sys	0m0.021s

real	0m0.324s
user	0m0.291s
sys	0m0.022s

real	0m0.290s
user	0m0.263s
sys	0m0.018s

real	0m0.280s
user	0m0.249s
sys	0m0.018s

real	0m0.315s
user	0m0.284s
sys	0m0.020s

real	0m0.352s
user	0m0.322s
sys	0m0.021s

real	0m0.327s
user	0m0.299s
sys	0m0.020s

real	0m0.240s
user	0m0.216s
sys	0m0.016s

real	0m0.305s
user	0m0.270s
sys	0m0.020s
Create index for binned data
Not including fragment map
Start preprocess
Writing header
Writing body
..
Writing footer

Finished preprocess

Calculating contact matrices took: 126158 milliseconds
HiC file version: 8
INFO [2016-08-05 20:31:47,065]  [DatasetReaderV2.java:449] [main]  No normalization vectors

Calculating norms for zoom BP_5000
VC normalization of X at BP_5000 took 9492 milliseconds
KR normalization of X at BP_5000 took 67541 milliseconds

Writing expected
Writing norms
Finished writing norms

real	3m28.725s
user	5m59.281s
sys	0m4.329s
Querying: 256x256 / 2048x2048 / slices / no norm
HiC file version: 8
Average time to query 256x256: 28 milliseconds
Average time to query 2048x2048: 198 milliseconds
Query 31055 rows at 5000BP on chrX: 91 millseconds
Query 31055 rows at 5000BP on chrX: 29 millseconds
Query 31055 rows at 5000BP on chrX: 27 millseconds
Query 31055 rows at 5000BP on chrX: 60 millseconds
Query 31055 rows at 5000BP on chrX: 39 millseconds
Query 31055 rows at 5000BP on chrX: 65 millseconds
Query 31055 rows at 5000BP on chrX: 61 millseconds
Query 31055 rows at 5000BP on chrX: 63 millseconds
Query 31055 rows at 5000BP on chrX: 69 millseconds
Query 31055 rows at 5000BP on chrX: 73 millseconds
Query 31055 rows at 5000BP on chrX: 61 millseconds
Query 31055 rows at 5000BP on chrX: 26 millseconds
Query 31055 rows at 5000BP on chrX: 61 millseconds
Query 31055 rows at 5000BP on chrX: 79 millseconds
Query 31055 rows at 5000BP on chrX: 68 millseconds
Query 31055 rows at 5000BP on chrX: 57 millseconds
Query 31055 rows at 5000BP on chrX: 22 millseconds
Query 31055 rows at 5000BP on chrX: 24 millseconds
Query 31055 rows at 5000BP on chrX: 77 millseconds
Query 31055 rows at 5000BP on chrX: 70 millseconds
Query 31055 rows at 5000BP on chrX: 63 millseconds
Query 31055 rows at 5000BP on chrX: 82 millseconds
Query 31055 rows at 5000BP on chrX: 69 millseconds
Query 31055 rows at 5000BP on chrX: 76 millseconds
Query 31055 rows at 5000BP on chrX: 63 millseconds
Query 31055 rows at 5000BP on chrX: 66 millseconds
Query 31055 rows at 5000BP on chrX: 50 millseconds
Query 31055 rows at 5000BP on chrX: 25 millseconds
Query 31055 rows at 5000BP on chrX: 50 millseconds
Query 31055 rows at 5000BP on chrX: 57 millseconds
Query 31055 rows at 5000BP on chrX: 72 millseconds
Query 31055 rows at 5000BP on chrX: 73 millseconds
Query 31055 rows at 5000BP on chrX: 83 millseconds
Query 31055 rows at 5000BP on chrX: 74 millseconds
Query 31055 rows at 5000BP on chrX: 87 millseconds
Query 31055 rows at 5000BP on chrX: 81 millseconds
Query 31055 rows at 5000BP on chrX: 93 millseconds
Query 31055 rows at 5000BP on chrX: 91 millseconds
Query 31055 rows at 5000BP on chrX: 95 millseconds
Query 31055 rows at 5000BP on chrX: 70 millseconds
Query 31055 rows at 5000BP on chrX: 93 millseconds
Query 31055 rows at 5000BP on chrX: 70 millseconds
Query 31055 rows at 5000BP on chrX: 68 millseconds
Query 31055 rows at 5000BP on chrX: 62 millseconds
Query 31055 rows at 5000BP on chrX: 39 millseconds
Query 31055 rows at 5000BP on chrX: 60 millseconds
Query 31055 rows at 5000BP on chrX: 67 millseconds
Query 31055 rows at 5000BP on chrX: 57 millseconds
Query 31055 rows at 5000BP on chrX: 63 millseconds
Query 31055 rows at 5000BP on chrX: 20 millseconds
Query 31055 rows at 5000BP on chrX: 67 millseconds
Query 31055 rows at 5000BP on chrX: 80 millseconds
Query 31055 rows at 5000BP on chrX: 77 millseconds
Query 31055 rows at 5000BP on chrX: 76 millseconds
Query 31055 rows at 5000BP on chrX: 63 millseconds
Query 31055 rows at 5000BP on chrX: 77 millseconds
Query 31055 rows at 5000BP on chrX: 88 millseconds
Query 31055 rows at 5000BP on chrX: 89 millseconds
Query 31055 rows at 5000BP on chrX: 75 millseconds
Query 31055 rows at 5000BP on chrX: 89 millseconds
Query 31055 rows at 5000BP on chrX: 72 millseconds
Query 31055 rows at 5000BP on chrX: 71 millseconds
Query 31055 rows at 5000BP on chrX: 81 millseconds
Query 31055 rows at 5000BP on chrX: 58 millseconds
Query 31055 rows at 5000BP on chrX: 61 millseconds
Query 31055 rows at 5000BP on chrX: 61 millseconds
Query 31055 rows at 5000BP on chrX: 66 millseconds
Query 31055 rows at 5000BP on chrX: 83 millseconds
Query 31055 rows at 5000BP on chrX: 61 millseconds
Query 31055 rows at 5000BP on chrX: 63 millseconds
Query 31055 rows at 5000BP on chrX: 67 millseconds
Query 31055 rows at 5000BP on chrX: 68 millseconds
Query 31055 rows at 5000BP on chrX: 63 millseconds
Query 31055 rows at 5000BP on chrX: 65 millseconds
Query 31055 rows at 5000BP on chrX: 73 millseconds
Query 31055 rows at 5000BP on chrX: 66 millseconds
Query 31055 rows at 5000BP on chrX: 64 millseconds
Query 31055 rows at 5000BP on chrX: 86 millseconds
Query 31055 rows at 5000BP on chrX: 67 millseconds
Query 31055 rows at 5000BP on chrX: 64 millseconds
Query 31055 rows at 5000BP on chrX: 59 millseconds
Query 31055 rows at 5000BP on chrX: 65 millseconds
Query 31055 rows at 5000BP on chrX: 69 millseconds
Query 31055 rows at 5000BP on chrX: 57 millseconds
Query 31055 rows at 5000BP on chrX: 61 millseconds
Query 31055 rows at 5000BP on chrX: 71 millseconds
Query 31055 rows at 5000BP on chrX: 65 millseconds
Query 31055 rows at 5000BP on chrX: 58 millseconds
Query 31055 rows at 5000BP on chrX: 67 millseconds
Query 31055 rows at 5000BP on chrX: 57 millseconds
Query 31055 rows at 5000BP on chrX: 60 millseconds
Query 31055 rows at 5000BP on chrX: 63 millseconds
Query 31055 rows at 5000BP on chrX: 57 millseconds
Query 31055 rows at 5000BP on chrX: 78 millseconds
Query 31055 rows at 5000BP on chrX: 47 millseconds
Query 31055 rows at 5000BP on chrX: 50 millseconds
Query 31055 rows at 5000BP on chrX: 67 millseconds
Query 31055 rows at 5000BP on chrX: 73 millseconds
Query 31055 rows at 5000BP on chrX: 67 millseconds
Query 31055 rows at 5000BP on chrX: 57 millseconds
Average time to query 1000 rows: 2 milliseconds
Query 31055 columns at 5000BP on chrX: 38 millseconds
Query 31055 columns at 5000BP on chrX: 65 millseconds
Query 31055 columns at 5000BP on chrX: 68 millseconds
Query 31055 columns at 5000BP on chrX: 24 millseconds
Query 31055 columns at 5000BP on chrX: 64 millseconds
Query 31055 columns at 5000BP on chrX: 59 millseconds
Query 31055 columns at 5000BP on chrX: 67 millseconds
Query 31055 columns at 5000BP on chrX: 59 millseconds
Query 31055 columns at 5000BP on chrX: 67 millseconds
Query 31055 columns at 5000BP on chrX: 63 millseconds
Query 31055 columns at 5000BP on chrX: 56 millseconds
Query 31055 columns at 5000BP on chrX: 43 millseconds
Query 31055 columns at 5000BP on chrX: 70 millseconds
Query 31055 columns at 5000BP on chrX: 68 millseconds
Query 31055 columns at 5000BP on chrX: 55 millseconds
Query 31055 columns at 5000BP on chrX: 55 millseconds
Query 31055 columns at 5000BP on chrX: 57 millseconds
Query 31055 columns at 5000BP on chrX: 60 millseconds
Query 31055 columns at 5000BP on chrX: 58 millseconds
Query 31055 columns at 5000BP on chrX: 82 millseconds
Query 31055 columns at 5000BP on chrX: 60 millseconds
Query 31055 columns at 5000BP on chrX: 73 millseconds
Query 31055 columns at 5000BP on chrX: 59 millseconds
Query 31055 columns at 5000BP on chrX: 59 millseconds
Query 31055 columns at 5000BP on chrX: 61 millseconds
Query 31055 columns at 5000BP on chrX: 57 millseconds
Query 31055 columns at 5000BP on chrX: 73 millseconds
Query 31055 columns at 5000BP on chrX: 59 millseconds
Query 31055 columns at 5000BP on chrX: 64 millseconds
Query 31055 columns at 5000BP on chrX: 62 millseconds
Query 31055 columns at 5000BP on chrX: 66 millseconds
Query 31055 columns at 5000BP on chrX: 61 millseconds
Query 31055 columns at 5000BP on chrX: 67 millseconds
Query 31055 columns at 5000BP on chrX: 60 millseconds
Query 31055 columns at 5000BP on chrX: 73 millseconds
Query 31055 columns at 5000BP on chrX: 60 millseconds
Query 31055 columns at 5000BP on chrX: 63 millseconds
Query 31055 columns at 5000BP on chrX: 50 millseconds
Query 31055 columns at 5000BP on chrX: 58 millseconds
Query 31055 columns at 5000BP on chrX: 72 millseconds
Query 31055 columns at 5000BP on chrX: 23 millseconds
Query 31055 columns at 5000BP on chrX: 60 millseconds
Query 31055 columns at 5000BP on chrX: 66 millseconds
Query 31055 columns at 5000BP on chrX: 69 millseconds
Query 31055 columns at 5000BP on chrX: 56 millseconds
Query 31055 columns at 5000BP on chrX: 61 millseconds
Query 31055 columns at 5000BP on chrX: 51 millseconds
Query 31055 columns at 5000BP on chrX: 63 millseconds
Query 31055 columns at 5000BP on chrX: 48 millseconds
Query 31055 columns at 5000BP on chrX: 71 millseconds
Query 31055 columns at 5000BP on chrX: 68 millseconds
Query 31055 columns at 5000BP on chrX: 59 millseconds
Query 31055 columns at 5000BP on chrX: 69 millseconds
Query 31055 columns at 5000BP on chrX: 67 millseconds
Query 31055 columns at 5000BP on chrX: 75 millseconds
Query 31055 columns at 5000BP on chrX: 67 millseconds
Query 31055 columns at 5000BP on chrX: 55 millseconds
Query 31055 columns at 5000BP on chrX: 70 millseconds
Query 31055 columns at 5000BP on chrX: 80 millseconds
Query 31055 columns at 5000BP on chrX: 89 millseconds
Query 31055 columns at 5000BP on chrX: 81 millseconds
Query 31055 columns at 5000BP on chrX: 61 millseconds
Query 31055 columns at 5000BP on chrX: 57 millseconds
Query 31055 columns at 5000BP on chrX: 65 millseconds
Query 31055 columns at 5000BP on chrX: 69 millseconds
Query 31055 columns at 5000BP on chrX: 52 millseconds
Query 31055 columns at 5000BP on chrX: 69 millseconds
Query 31055 columns at 5000BP on chrX: 68 millseconds
Query 31055 columns at 5000BP on chrX: 66 millseconds
Query 31055 columns at 5000BP on chrX: 57 millseconds
Query 31055 columns at 5000BP on chrX: 56 millseconds
Query 31055 columns at 5000BP on chrX: 62 millseconds
Query 31055 columns at 5000BP on chrX: 63 millseconds
Query 31055 columns at 5000BP on chrX: 79 millseconds
Query 31055 columns at 5000BP on chrX: 73 millseconds
Query 31055 columns at 5000BP on chrX: 79 millseconds
Query 31055 columns at 5000BP on chrX: 70 millseconds
Query 31055 columns at 5000BP on chrX: 70 millseconds
Query 31055 columns at 5000BP on chrX: 27 millseconds
Query 31055 columns at 5000BP on chrX: 64 millseconds
Query 31055 columns at 5000BP on chrX: 71 millseconds
Query 31055 columns at 5000BP on chrX: 71 millseconds
Query 31055 columns at 5000BP on chrX: 23 millseconds
Query 31055 columns at 5000BP on chrX: 70 millseconds
Query 31055 columns at 5000BP on chrX: 68 millseconds
Query 31055 columns at 5000BP on chrX: 84 millseconds
Query 31055 columns at 5000BP on chrX: 62 millseconds
Query 31055 columns at 5000BP on chrX: 91 millseconds
Query 31055 columns at 5000BP on chrX: 18 millseconds
Query 31055 columns at 5000BP on chrX: 72 millseconds
Query 31055 columns at 5000BP on chrX: 67 millseconds
Query 31055 columns at 5000BP on chrX: 59 millseconds
Query 31055 columns at 5000BP on chrX: 55 millseconds
Query 31055 columns at 5000BP on chrX: 60 millseconds
Query 31055 columns at 5000BP on chrX: 70 millseconds
Query 31055 columns at 5000BP on chrX: 73 millseconds
Query 31055 columns at 5000BP on chrX: 59 millseconds
Query 31055 columns at 5000BP on chrX: 74 millseconds
Query 31055 columns at 5000BP on chrX: 63 millseconds
Query 31055 columns at 5000BP on chrX: 74 millseconds
Average time to query 1000 columns: 2 milliseconds
Query 31055-length diagonal at 5000BP on chrX: 1131 millseconds
Query 31055-length diagonal at 5000BP on chrX: 1285 millseconds
Query 31055-length diagonal at 5000BP on chrX: 1214 millseconds
Query 31055-length diagonal at 5000BP on chrX: 1109 millseconds
Query 31055-length diagonal at 5000BP on chrX: 1119 millseconds
Query 31055-length diagonal at 5000BP on chrX: 1090 millseconds
Query 31055-length diagonal at 5000BP on chrX: 1059 millseconds
Query 31055-length diagonal at 5000BP on chrX: 1068 millseconds
Query 31055-length diagonal at 5000BP on chrX: 1244 millseconds
Query 31055-length diagonal at 5000BP on chrX: 1137 millseconds
Average time to query 1000 diagonal entries: 36 milliseconds
Querying: 256x256 / 2048x2048 / slices / balanced norm
HiC file version: 8
Average time to query 256x256: 30 milliseconds
Average time to query 2048x2048: 258 milliseconds
Average time to query 1000 rows: 2 milliseconds
Average time to query 1000 columns: 2 milliseconds
Average time to query 1000 diagonal entries: 47 milliseconds
Binary index to text
HiC file version: 8

real	0m10.515s
user	0m9.167s
sys	0m0.965s