[BEP028] provenance - heudiconv conversion

.github/workflows/validate_datasets.yml

@@ -107,7 +107,7 @@ jobs:
         fi
 
     - name: Skip legacy validation for post-legacy datasets
-      run: for DS in mrs_* dwi_deriv pet006 pheno004 volume_timing; do touch $DS/.SKIP_VALIDATION; done
+      run: for DS in mrs_* dwi_deriv pet006 pheno004 volume_timing provenance_*; do touch $DS/.SKIP_VALIDATION; done
       if: matrix.bids-validator == 'legacy'
 
     - name: Skip stable validation for datasets with unreleased validator features
@@ -119,7 +119,7 @@ jobs:
     - name: Skip main validation for datasets with unreleased spec features
       # Replace ${EMPTY} with dataset patterns, when this is needed
       # Reset to "for DS in ${EMPTY}; ..." after a spec release
-      run: for DS in dwi_deriv pheno004; do touch $DS/.SKIP_VALIDATION; done
+      run: for DS in dwi_deriv pheno004 provenance_*; do touch $DS/.SKIP_VALIDATION; done
       if: matrix.bids-validator != 'dev'
 
     - name: Set BIDS_SCHEMA variable for dev version
@@ -128,7 +128,7 @@ jobs:
       # Update this URL to the schema.json from PRs to the spec, when needed.
       # If this variable is unset, dev will generally track the latest development
       # release of https://jsr.io/@bids/schema
-      run: echo BIDS_SCHEMA=https://bids-specification.readthedocs.io/en/latest/schema.json >> $GITHUB_ENV
+      run: echo BIDS_SCHEMA=https://bids-specification--2099.org.readthedocs.build/en/2099/schema.json >> $GITHUB_ENV
 
     - name: Validate all BIDS datasets using bids-validator
       run: |

README.md

@@ -372,5 +372,6 @@ TABLE BELOW IS GENERATED AUTOMATICALLY.
 DO NOT EDIT DIRECTLY.
 -->
 
-| name   | description   | datatypes   | suffixes   | link to full data   | maintained by   |
-|--------|---------------|-------------|------------|---------------------|-----------------|
+| name                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          | description   | datatypes   | suffixes   | link to full data   | maintained by   |
+|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:--------------|:------------|:-----------|:--------------------|:----------------|
+| [provenance_heudiconv Shows minimal example of provenance metadata for a DICOM to Nifti conversion with [`heudiconv`](https://heudiconv.readthedocs.io/en/latest/) This example is based upon [hirni-demo](https://github.com/psychoinformatics-de/hirni-demo) data [@bclenet](https://github.com/bclenet) anat T1w, act, ent, env, soft](https://github.com/bids-standard/bids-examples/tree/master/provenance_heudiconv Shows minimal example of provenance metadata for a DICOM to Nifti conversion with [`heudiconv`](https://heudiconv.readthedocs.io/en/latest/) This example is based upon [hirni-demo](https://github.com/psychoinformatics-de/hirni-demo) data [@bclenet](https://github.com/bclenet) anat T1w, act, ent, env, soft) | n/a           | n/a         | n/a        | n/a                 | n/a             |

dataset_listing.tsv

@@ -86,3 +86,4 @@ xeeg_hed_score	EEG and iEEG data with annotations of artifacts, seizures and mod
 dwi_deriv	exemplifies the storage of diffusion MRI derivates that may be generated on the Siemens XA platform.			dwi	dwi
 pheno004	Minimal dataset with subjects with imaging and/or phenotype data		[@ericearl](https://github.com/ericearl)	phenotype, anat	T1w
 mri_chunk	Example MRI dataset to illustrate BIDS chunk entity. A single subject, two chunks.		[@valosekj](https://github.com/valosekj)	anat	T1w
+provenance_heudiconv Shows minimal example of provenance metadata for a DICOM to Nifti conversion with [`heudiconv`](https://heudiconv.readthedocs.io/en/latest/) This example is based upon [hirni-demo](https://github.com/psychoinformatics-de/hirni-demo) data [@bclenet](https://github.com/bclenet) anat T1w, act, ent, env, soft

provenance_heudiconv/.bidsignore

@@ -0,0 +1 @@
+.duecredit.p

provenance_heudiconv/.heudiconv/02/ses-acq1/info/02_ses-acq1.auto.txt

@@ -0,0 +1 @@
+{('sub-001/anat/sub-001_run-1_T1w', ('nii.gz',), None): ['401-anat-T1w']}

provenance_heudiconv/.heudiconv/02/ses-acq1/info/02_ses-acq1.edit.txt

@@ -0,0 +1 @@
+{('sub-001/anat/sub-001_run-1_T1w', ('nii.gz',), None): ['401-anat-T1w']}