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DeepBioSim: Efficient and Versatile Methods for Microbiome Data Simulation with Minimal Statistical Assumptions

https://doi.org/10.1101/2025.08.21.670443

Quickstart

pip install KDEpy tqdm torch torchvision numpy scikit-learn matplotlib pandas

./run_deepbiosim.sh (Check this file for detailed instructions)

Bug Report

As bioinformaticians in training, we acknowledge that poor usability is rampant but it should not be tolerated. Let us know how we can improve! Create an issue and we'll look into it.