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Thanks very much for providing bwa-meth to the community.
The README recommends using MethylDackel for methylation calling/tabulation, etc., however MethylDackel has had a critical error leading to a seg-fault/core-dump which, apparently, has been unresolved for a few months now. In looking for alternatives, I tried using mcall, but mcall log shows the following error:
[..]
XR:Z or ZR:Z:, or ZS:Z: field not found
[..]
I know this isn't really your responsibility, but can you recommend an alternative methyl-caller package to use downstream of bwameth until the issue with MethylDackel is resolved? thanks for any advice you can offer.
The text was updated successfully, but these errors were encountered:
It looks like a solution there is to build with htslib 1.9 instead of relying on the conda build. (You could also try htslib 1.11 which is released today).
I don't know of other tools beyond MethylDackel.
Thanks very much for providing bwa-meth to the community.
The README recommends using MethylDackel for methylation calling/tabulation, etc., however MethylDackel has had a critical error leading to a seg-fault/core-dump which, apparently, has been unresolved for a few months now. In looking for alternatives, I tried using mcall, but mcall log shows the following error:
I know this isn't really your responsibility, but can you recommend an alternative methyl-caller package to use downstream of bwameth until the issue with MethylDackel is resolved? thanks for any advice you can offer.
The text was updated successfully, but these errors were encountered: