From 35e03a8de6e3ebf7888766eaec09f88a7fb7d2a8 Mon Sep 17 00:00:00 2001
From: Lucrezia Valeriani <valerianilucrezia11@gmail.com>
Date: Wed, 22 Jan 2025 16:57:17 +0100
Subject: [PATCH] update ensemblvep.config

---
 conf/modules/ensemblvep.config | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/conf/modules/ensemblvep.config b/conf/modules/ensemblvep.config
index 8a08ca7..a884e2a 100644
--- a/conf/modules/ensemblvep.config
+++ b/conf/modules/ensemblvep.config
@@ -6,7 +6,7 @@ process {
             [
                 mode: params.publish_dir_mode,
                 path: { "${params.outdir}/variant_annotation/vep/${meta.dataset}/${meta.patient}/${meta.tumour_sample}/" },
-                pattern: "*{vcf.gz,tab.gz,json.gz,html,yml}"
+                pattern: "*{vcf.gz,tab.gz,json.gz,html}"
             ]
         ]
     }
@@ -33,7 +33,7 @@ process {
             [
                 mode: params.publish_dir_mode,
                 path: { "${params.outdir}/variant_annotation/vep/${meta.dataset}/${meta.patient}/${meta.tumour_sample}/" },
-                pattern: "*{tbi,csi,yml}"
+                pattern: "*{tbi,csi}"
             ]
         ]
     }