diff --git a/modules/nf-core/bcftools/mpileup/bcftools-mpileup.diff b/modules/nf-core/bcftools/mpileup/bcftools-mpileup.diff
new file mode 100644
index 0000000..ef4e905
--- /dev/null
+++ b/modules/nf-core/bcftools/mpileup/bcftools-mpileup.diff
@@ -0,0 +1,21 @@
+Changes in module 'nf-core/bcftools/mpileup'
+'modules/nf-core/bcftools/mpileup/environment.yml' is unchanged
+'modules/nf-core/bcftools/mpileup/meta.yml' is unchanged
+Changes in 'bcftools/mpileup/main.nf':
+--- modules/nf-core/bcftools/mpileup/main.nf
++++ modules/nf-core/bcftools/mpileup/main.nf
+@@ -31,7 +31,7 @@
+     def bgzip_mpileup = save_mpileup ? "bgzip ${prefix}.mpileup" : ""
+     def intervals = intervals ? "-T ${intervals}" : ""
+     """
+-    echo "${meta.id}" > sample_name.list
++    echo "${meta.tumour_sample}" > sample_name.list
+ 
+     bcftools \\
+         mpileup \\
+
+'modules/nf-core/bcftools/mpileup/tests/main.nf.test.snap' was removed
+'modules/nf-core/bcftools/mpileup/tests/tags.yml' was removed
+'modules/nf-core/bcftools/mpileup/tests/nextflow.config' was removed
+'modules/nf-core/bcftools/mpileup/tests/main.nf.test' was removed
+************************************************************
diff --git a/modules/nf-core/ensemblvep/download/ensemblvep-download.diff b/modules/nf-core/ensemblvep/download/ensemblvep-download.diff
new file mode 100644
index 0000000..3d148a0
--- /dev/null
+++ b/modules/nf-core/ensemblvep/download/ensemblvep-download.diff
@@ -0,0 +1,34 @@
+Changes in module 'nf-core/ensemblvep/download'
+Changes in 'ensemblvep/download/main.nf':
+--- modules/nf-core/ensemblvep/download/main.nf
++++ modules/nf-core/ensemblvep/download/main.nf
+@@ -2,10 +2,10 @@
+     tag "$meta.id"
+     label 'process_medium'
+ 
+-    conda "${moduleDir}/environment.yml"
++    //conda "${moduleDir}/environment.yml"
+     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
+-        'https://depot.galaxyproject.org/singularity/ensembl-vep:113.0--pl5321h2a3209d_0' :
+-        'biocontainers/ensembl-vep:113.0--pl5321h2a3209d_0' }"
++        'https://depot.galaxyproject.org/singularity/ensembl-vep:111.0--pl5321h2a3209d_0' :
++        'biocontainers/ensembl-vep:111.0--pl5321h2a3209d_0' }"
+ 
+     input:
+     tuple val(meta), val(assembly), val(species), val(cache_version)
+@@ -20,6 +20,7 @@
+     script:
+     def args = task.ext.args ?: ''
+     prefix = task.ext.prefix ?: 'vep_cache'
++    
+     """
+     vep_install \\
+         --CACHEDIR $prefix \\
+
+'modules/nf-core/ensemblvep/download/environment.yml' was removed
+'modules/nf-core/ensemblvep/download/meta.yml' was removed
+'modules/nf-core/ensemblvep/download/tests/main.nf.test.snap' was removed
+'modules/nf-core/ensemblvep/download/tests/tags.yml' was removed
+'modules/nf-core/ensemblvep/download/tests/nextflow.config' was removed
+'modules/nf-core/ensemblvep/download/tests/main.nf.test' was removed
+************************************************************
diff --git a/modules/nf-core/ensemblvep/vep/ensemblvep-vep.diff b/modules/nf-core/ensemblvep/vep/ensemblvep-vep.diff
new file mode 100644
index 0000000..7e781e9
--- /dev/null
+++ b/modules/nf-core/ensemblvep/vep/ensemblvep-vep.diff
@@ -0,0 +1,32 @@
+Changes in module 'nf-core/ensemblvep/vep'
+'modules/nf-core/ensemblvep/vep/environment.yml' is unchanged
+'modules/nf-core/ensemblvep/vep/meta.yml' is unchanged
+Changes in 'ensemblvep/vep/main.nf':
+--- modules/nf-core/ensemblvep/vep/main.nf
++++ modules/nf-core/ensemblvep/vep/main.nf
+@@ -6,7 +6,7 @@
+     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
+         'https://depot.galaxyproject.org/singularity/ensembl-vep:111.0--pl5321h2a3209d_0' :
+         'biocontainers/ensembl-vep:111.0--pl5321h2a3209d_0' }"
+-
++    
+     input:
+     tuple val(meta), path(vcf), path(custom_extra_files)
+     val   genome
+@@ -33,6 +33,8 @@
+     def prefix = task.ext.prefix ?: "${meta.id}"
+     def dir_cache = cache ? "\${PWD}/${cache}" : "/.vep"
+     def reference = fasta ? "--fasta $fasta" : ""
++
++    
+     """
+     vep \\
+         -i $vcf \\
+
+'modules/nf-core/ensemblvep/vep/tests/main.nf.test.snap' was removed
+'modules/nf-core/ensemblvep/vep/tests/tab.gz.config' was removed
+'modules/nf-core/ensemblvep/vep/tests/tags.yml' was removed
+'modules/nf-core/ensemblvep/vep/tests/vcf.config' was removed
+'modules/nf-core/ensemblvep/vep/tests/nextflow.config' was removed
+'modules/nf-core/ensemblvep/vep/tests/main.nf.test' was removed
+************************************************************