| \n", + " | cell_type_ontology_term_id | \n", + "num_cells | \n", + "
|---|---|---|
| 0 | \n", + "CL:0000540 | \n", + "2938728 | \n", + "
| 1 | \n", + "CL:4023040 | \n", + "1695623 | \n", + "
| 2 | \n", + "CL:0000128 | \n", + "1294620 | \n", + "
| 3 | \n", + "CL:0000624 | \n", + "1238275 | \n", + "
| 4 | \n", + "CL:0000625 | \n", + "1179803 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "
| 666 | \n", + "CL:0011101 | \n", + "14 | \n", + "
| 667 | \n", + "CL:0000103 | \n", + "12 | \n", + "
| 668 | \n", + "CL:0000019 | \n", + "11 | \n", + "
| 669 | \n", + "CL:0002280 | \n", + "10 | \n", + "
| 670 | \n", + "CL:0000218 | \n", + "8 | \n", + "
671 rows × 2 columns
\n", + "| \n", + " | cell_type | \n", + "num_cells | \n", + "
|---|---|---|
| 0 | \n", + "neuron | \n", + "2938728 | \n", + "
| 1 | \n", + "L2/3-6 intratelencephalic projecting glutamate... | \n", + "1695623 | \n", + "
| 2 | \n", + "oligodendrocyte | \n", + "1294620 | \n", + "
| 3 | \n", + "CD4-positive, alpha-beta T cell | \n", + "1238275 | \n", + "
| 4 | \n", + "CD8-positive, alpha-beta T cell | \n", + "1179803 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "
| 666 | \n", + "bone marrow cell | \n", + "14 | \n", + "
| 667 | \n", + "bipolar neuron | \n", + "12 | \n", + "
| 668 | \n", + "sperm | \n", + "11 | \n", + "
| 669 | \n", + "type N enteroendocrine cell | \n", + "10 | \n", + "
| 670 | \n", + "myelinating Schwann cell | \n", + "8 | \n", + "
671 rows × 2 columns
\n", + "| \n", + " | cell_type | \n", + "num_cells | \n", + "new_num_cells | \n", + "
|---|---|---|---|
| 0 | \n", + "neuron | \n", + "2938728 | \n", + "1952112 | \n", + "
| 1 | \n", + "sensory neuron | \n", + "1605 | \n", + "1799 | \n", + "
| 2 | \n", + "primary cultured cell | \n", + "80 | \n", + "64 | \n", + "
| 3 | \n", + "cultured cell | \n", + "0 | \n", + "12 | \n", + "
| 4 | \n", + "fibroblast neural crest derived | \n", + "0 | \n", + "95 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "... | \n", + "
| 885 | \n", + "metallothionein-positive alveolar macrophage | \n", + "357 | \n", + "275 | \n", + "
| 886 | \n", + "lung interstitial macrophage | \n", + "302 | \n", + "180 | \n", + "
| 887 | \n", + "deuterosomal cell | \n", + "67 | \n", + "53 | \n", + "
| 888 | \n", + "respiratory suprabasal cell | \n", + "1792 | \n", + "1204 | \n", + "
| 889 | \n", + "luminal hormone-sensing cell of mammary gland | \n", + "196476 | \n", + "113177 | \n", + "
890 rows × 3 columns
\n", + "| \n", + " | development_stage_ontology_term_id | \n", + "num_cells | \n", + "
|---|---|---|
| 0 | \n", + "unknown | \n", + "2645739 | \n", + "
| 1 | \n", + "HsapDv:0000095 | \n", + "1768880 | \n", + "
| 2 | \n", + "HsapDv:0000144 | \n", + "1768121 | \n", + "
| 3 | \n", + "HsapDv:0000123 | \n", + "1411475 | \n", + "
| 4 | \n", + "HsapDv:0000136 | \n", + "1396533 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "
| 169 | \n", + "HsapDv:0000219 | \n", + "2240 | \n", + "
| 170 | \n", + "HsapDv:0000223 | \n", + "976 | \n", + "
| 171 | \n", + "HsapDv:0000221 | \n", + "930 | \n", + "
| 172 | \n", + "HsapDv:0000220 | \n", + "867 | \n", + "
| 173 | \n", + "HsapDv:0000192 | \n", + "509 | \n", + "
174 rows × 2 columns
\n", + "| \n", + " | development_stage | \n", + "num_cells | \n", + "
|---|---|---|
| 0 | \n", + "unknown | \n", + "2645739 | \n", + "
| 1 | \n", + "80 year-old and over human stage | \n", + "1768880 | \n", + "
| 2 | \n", + "50-year-old human stage | \n", + "1768121 | \n", + "
| 3 | \n", + "29-year-old human stage | \n", + "1411475 | \n", + "
| 4 | \n", + "42-year-old human stage | \n", + "1396533 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "
| 169 | \n", + "93-year-old human stage | \n", + "2240 | \n", + "
| 170 | \n", + "97-year-old human stage | \n", + "976 | \n", + "
| 171 | \n", + "95-year-old human stage | \n", + "930 | \n", + "
| 172 | \n", + "94-year-old human stage | \n", + "867 | \n", + "
| 173 | \n", + "19-month-old human stage | \n", + "509 | \n", + "
174 rows × 2 columns
\n", + "| \n", + " | disease_ontology_term_id | \n", + "num_cells | \n", + "
|---|---|---|
| 0 | \n", + "PATO:0000461 | \n", + "25905102 | \n", + "
| 1 | \n", + "MONDO:0100096 | \n", + "4109684 | \n", + "
| 2 | \n", + "MONDO:0001627 | \n", + "1135641 | \n", + "
| 3 | \n", + "MONDO:0018177 | \n", + "1001237 | \n", + "
| 4 | \n", + "MONDO:0007915 | \n", + "708987 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "
| 93 | \n", + "MONDO:0012419 | \n", + "1614 | \n", + "
| 94 | \n", + "MONDO:0005348 | \n", + "1227 | \n", + "
| 95 | \n", + "MONDO:0004994 | \n", + "1027 | \n", + "
| 96 | \n", + "MONDO:0019562 | \n", + "1018 | \n", + "
| 97 | \n", + "MONDO:0002513 | \n", + "57 | \n", + "
98 rows × 2 columns
\n", + "| \n", + " | disease | \n", + "num_cells | \n", + "
|---|---|---|
| 0 | \n", + "normal | \n", + "25905102 | \n", + "
| 1 | \n", + "COVID-19 | \n", + "4109684 | \n", + "
| 2 | \n", + "dementia | \n", + "1135641 | \n", + "
| 3 | \n", + "glioblastoma | \n", + "1001237 | \n", + "
| 4 | \n", + "systemic lupus erythematosus | \n", + "708987 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "
| 93 | \n", + "age related macular degeneration 7 | \n", + "1614 | \n", + "
| 94 | \n", + "keloid | \n", + "1227 | \n", + "
| 95 | \n", + "cardiomyopathy | \n", + "1027 | \n", + "
| 96 | \n", + "localized scleroderma | \n", + "1018 | \n", + "
| 97 | \n", + "kidney benign neoplasm | \n", + "57 | \n", + "
98 rows × 2 columns
\n", + "| \n", + " | sex_ontology_term_id | \n", + "num_cells | \n", + "
|---|---|---|
| 0 | \n", + "PATO:0000384 | \n", + "19181831 | \n", + "
| 1 | \n", + "PATO:0000383 | \n", + "16267559 | \n", + "
| 2 | \n", + "unknown | \n", + "2857853 | \n", + "
| \n", + " | sex | \n", + "num_cells | \n", + "
|---|---|---|
| 0 | \n", + "male | \n", + "19181831 | \n", + "
| 1 | \n", + "female | \n", + "16267559 | \n", + "
| 2 | \n", + "unknown | \n", + "2857853 | \n", + "
| \n", + " | tissue_ontology_term_id | \n", + "num_cells | \n", + "
|---|---|---|
| 0 | \n", + "UBERON:0000178 | \n", + "9446186 | \n", + "
| 1 | \n", + "UBERON:0002048 | \n", + "2412727 | \n", + "
| 2 | \n", + "UBERON:0000310 | \n", + "2269902 | \n", + "
| 3 | \n", + "UBERON:0009834 | \n", + "1591509 | \n", + "
| 4 | \n", + "UBERON:0002771 | \n", + "1317262 | \n", + "
| \n", + " | tissue | \n", + "num_cells | \n", + "
|---|---|---|
| 0 | \n", + "blood | \n", + "9446186 | \n", + "
| 1 | \n", + "lung | \n", + "2412727 | \n", + "
| 2 | \n", + "breast | \n", + "2269902 | \n", + "
| 3 | \n", + "dorsolateral prefrontal cortex | \n", + "1591509 | \n", + "
| 4 | \n", + "middle temporal gyrus | \n", + "1317262 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "
| 259 | \n", + "left parietal lobe | \n", + "163 | \n", + "
| 260 | \n", + "vault of skull | \n", + "123 | \n", + "
| 261 | \n", + "kidney blood vessel | \n", + "47 | \n", + "
| 262 | \n", + "skin of face | \n", + "37 | \n", + "
| 263 | \n", + "skin of shoulder | \n", + "37 | \n", + "
264 rows × 2 columns
\n", + "| \n", + " | cell_type | \n", + "assay | \n", + "suspension_type | \n", + "disease | \n", + "sex | \n", + "tissue_coarse | \n", + "cell_type_distance_from_root | \n", + "dataset_id | \n", + "donor_id | \n", + "total_mrna_umis_avg | \n", + "n_cells | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "oligodendrocyte | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "normal | \n", + "male | \n", + "brain | \n", + "5.0 | \n", + "bab7432a-5cfe-45ea-928c-422d03c45cdd | \n", + "#138 | \n", + "5040.933212 | \n", + "4956 | \n", + "
| 1 | \n", + "cerebellar granule cell | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "normal | \n", + "male | \n", + "brain | \n", + "7.0 | \n", + "bab7432a-5cfe-45ea-928c-422d03c45cdd | \n", + "#138 | \n", + "4264.749176 | \n", + "2731 | \n", + "
| 2 | \n", + "interneuron | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "normal | \n", + "male | \n", + "brain | \n", + "4.0 | \n", + "bab7432a-5cfe-45ea-928c-422d03c45cdd | \n", + "#138 | \n", + "9288.528169 | \n", + "142 | \n", + "
| 3 | \n", + "unknown | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "normal | \n", + "male | \n", + "brain | \n", + "NaN | \n", + "bab7432a-5cfe-45ea-928c-422d03c45cdd | \n", + "#138 | \n", + "3819.324324 | \n", + "666 | \n", + "
| 4 | \n", + "differentiation-committed oligodendrocyte prec... | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "normal | \n", + "male | \n", + "brain | \n", + "4.0 | \n", + "bab7432a-5cfe-45ea-928c-422d03c45cdd | \n", + "#138 | \n", + "4756.629870 | \n", + "308 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "
| 1896 | \n", + "microglial cell | \n", + "10x 3' v3 | \n", + "cell | \n", + "glioblastoma | \n", + "male | \n", + "brain | \n", + "8.0 | \n", + "56c4912d-2bae-4b64-98f2-af8a84389208 | \n", + "ndGBM-06 | \n", + "4770.666667 | \n", + "18 | \n", + "
| 1897 | \n", + "macrophage | \n", + "10x 3' v3 | \n", + "cell | \n", + "glioblastoma | \n", + "male | \n", + "brain | \n", + "5.0 | \n", + "56c4912d-2bae-4b64-98f2-af8a84389208 | \n", + "ndGBM-06 | \n", + "10234.568627 | \n", + "51 | \n", + "
| 1898 | \n", + "monocyte | \n", + "10x 3' v3 | \n", + "cell | \n", + "glioblastoma | \n", + "male | \n", + "brain | \n", + "5.0 | \n", + "56c4912d-2bae-4b64-98f2-af8a84389208 | \n", + "ndGBM-06 | \n", + "7086.076923 | \n", + "13 | \n", + "
| 1899 | \n", + "natural killer cell | \n", + "10x 3' v3 | \n", + "cell | \n", + "glioblastoma | \n", + "male | \n", + "brain | \n", + "7.0 | \n", + "56c4912d-2bae-4b64-98f2-af8a84389208 | \n", + "ndGBM-06 | \n", + "5751.000000 | \n", + "1 | \n", + "
| 1900 | \n", + "radial glial cell | \n", + "10x 3' v3 | \n", + "cell | \n", + "glioblastoma | \n", + "male | \n", + "brain | \n", + "4.0 | \n", + "56c4912d-2bae-4b64-98f2-af8a84389208 | \n", + "ndGBM-06 | \n", + "1226.000000 | \n", + "3 | \n", + "
1789 rows × 11 columns
\n", + "| \n", + " | cell_type | \n", + "suspension_type | \n", + "assay_list | \n", + "total_mrna_umis_avg | \n", + "n_cells | \n", + "
|---|---|---|---|---|---|
| 0 | \n", + "L2/3-6 intratelencephalic projecting glutamate... | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "32283.096081 | \n", + "40379.0 | \n", + "
| 1 | \n", + "neuron | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "19390.023813 | \n", + "38825.0 | \n", + "
| 2 | \n", + "oligodendrocyte | \n", + "nucleus | \n", + "[10x 3' v2, 10x 3' v3] | \n", + "3466.119566 | \n", + "34701.0 | \n", + "
| 3 | \n", + "astrocyte | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "4337.817282 | \n", + "8561.0 | \n", + "
| 4 | \n", + "pvalb GABAergic cortical interneuron | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "17218.924481 | \n", + "7344.0 | \n", + "
| 5 | \n", + "vip GABAergic cortical interneuron | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "13455.119639 | \n", + "7249.0 | \n", + "
| 6 | \n", + "glutamatergic neuron | \n", + "nucleus | \n", + "[10x 3' v2] | \n", + "6141.094851 | \n", + "7105.0 | \n", + "
| 7 | \n", + "oligodendrocyte precursor cell | \n", + "nucleus | \n", + "[10x 3' v2, 10x 3' v3] | \n", + "6325.213182 | \n", + "6695.0 | \n", + "
| 8 | \n", + "sst GABAergic cortical interneuron | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "14236.769992 | \n", + "6387.0 | \n", + "
| 9 | \n", + "malignant cell | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3] | \n", + "12343.866509 | \n", + "5841.0 | \n", + "
| 10 | \n", + "microglial cell | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "3531.395319 | \n", + "5683.0 | \n", + "
| 11 | \n", + "lamp5 GABAergic cortical interneuron | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "16460.512190 | \n", + "5123.0 | \n", + "
| 12 | \n", + "astrocyte of the cerebral cortex | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "7024.244142 | \n", + "4539.0 | \n", + "
| 13 | \n", + "neural cell | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "3671.033365 | \n", + "3740.0 | \n", + "
| 14 | \n", + "GABAergic neuron | \n", + "nucleus | \n", + "[10x 3' v2] | \n", + "3133.254010 | \n", + "3494.0 | \n", + "
| 15 | \n", + "mature astrocyte | \n", + "nucleus | \n", + "[10x 3' v2] | \n", + "1619.839781 | \n", + "3439.0 | \n", + "
| 16 | \n", + "macrophage | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3] | \n", + "8287.577188 | \n", + "3309.0 | \n", + "
| 17 | \n", + "cerebellar granule cell | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "4264.749176 | \n", + "2731.0 | \n", + "
| 18 | \n", + "mature microglial cell | \n", + "nucleus | \n", + "[10x 3' v2] | \n", + "754.149411 | \n", + "2453.0 | \n", + "
| 19 | \n", + "corticothalamic-projecting glutamatergic corti... | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "34544.952352 | \n", + "2273.0 | \n", + "
| 20 | \n", + "L6b glutamatergic cortical neuron | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "42263.586519 | \n", + "2037.0 | \n", + "
| 21 | \n", + "sncg GABAergic cortical interneuron | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "13442.716510 | \n", + "1984.0 | \n", + "
| 22 | \n", + "endothelial cell | \n", + "nucleus | \n", + "[10x 3' v2, 10x 3' v3] | \n", + "2991.238648 | \n", + "1739.0 | \n", + "
| 23 | \n", + "choroid plexus epithelial cell | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "1962.060115 | \n", + "1688.0 | \n", + "
| 24 | \n", + "near-projecting glutamatergic cortical neuron | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "25631.228839 | \n", + "1350.0 | \n", + "
| 25 | \n", + "chandelier pvalb GABAergic cortical interneuron | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "15983.292474 | \n", + "1183.0 | \n", + "
| 26 | \n", + "L5 extratelencephalic projecting glutamatergic... | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "56934.420491 | \n", + "1064.0 | \n", + "
| 27 | \n", + "caudal ganglionic eminence derived GABAergic c... | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "18562.883256 | \n", + "998.0 | \n", + "
| 28 | \n", + "L2/3 intratelencephalic projecting glutamaterg... | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "9379.776991 | \n", + "565.0 | \n", + "
| 29 | \n", + "mesenchymal cell | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "1004.686337 | \n", + "448.0 | \n", + "
| \n", + " | cell_type | \n", + "suspension_type | \n", + "assay_list | \n", + "total_mrna_umis_avg | \n", + "n_cells | \n", + "
|---|---|---|---|---|---|
| 0 | \n", + "classical monocyte | \n", + "cell | \n", + "[10x 3' v2, 10x 5' v1] | \n", + "3750.452919 | \n", + "15635.0 | \n", + "
| 1 | \n", + "CD4-positive, alpha-beta T cell | \n", + "cell | \n", + "[10x 3' v2, 10x 5' v1, 10x 5' v2] | \n", + "5918.412073 | \n", + "15511.0 | \n", + "
| 2 | \n", + "natural killer cell | \n", + "cell | \n", + "[10x 3' v2, 10x 5' v1, 10x 5' v2] | \n", + "3041.429188 | \n", + "9283.0 | \n", + "
| 3 | \n", + "CD8-positive, alpha-beta T cell | \n", + "cell | \n", + "[10x 3' v2, 10x 5' v1, 10x 5' v2] | \n", + "4589.421460 | \n", + "9105.0 | \n", + "
| 4 | \n", + "naive thymus-derived CD4-positive, alpha-beta ... | \n", + "cell | \n", + "[10x 3' v2, 10x 5' v1, 10x 5' v2] | \n", + "4060.653027 | \n", + "7317.0 | \n", + "
| 5 | \n", + "B cell | \n", + "cell | \n", + "[10x 3' v2, 10x 5' v1, 10x 5' v2] | \n", + "3876.332703 | \n", + "5547.0 | \n", + "
| 6 | \n", + "CD8-positive, alpha-beta cytotoxic T cell | \n", + "cell | \n", + "[10x 5' v1, 10x 5' v2] | \n", + "3894.209560 | \n", + "4782.0 | \n", + "
| 7 | \n", + "CD14-positive, CD16-negative classical monocyte | \n", + "cell | \n", + "[10x 5' v2] | \n", + "5123.484024 | \n", + "4632.0 | \n", + "
| 8 | \n", + "T cell | \n", + "cell | \n", + "[10x 3' v3, 10x 5' v2] | \n", + "5692.380368 | \n", + "4489.0 | \n", + "
| 9 | \n", + "mature B cell | \n", + "cell | \n", + "[10x 3' v3, 10x 5' v2] | \n", + "6323.356494 | \n", + "4084.0 | \n", + "
| 10 | \n", + "type I NK T cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "1712.290701 | \n", + "3963.0 | \n", + "
| 11 | \n", + "central memory CD4-positive, alpha-beta T cell | \n", + "cell | \n", + "[10x 3' v2, 10x 5' v2] | \n", + "5184.589340 | \n", + "3963.0 | \n", + "
| 12 | \n", + "naive thymus-derived CD8-positive, alpha-beta ... | \n", + "cell | \n", + "[10x 3' v2, 10x 5' v1, 10x 5' v2] | \n", + "4618.718611 | \n", + "3604.0 | \n", + "
| 13 | \n", + "CD14-positive monocyte | \n", + "cell | \n", + "[10x 3' v2, 10x 5' v2] | \n", + "4891.869582 | \n", + "3356.0 | \n", + "
| 14 | \n", + "non-classical monocyte | \n", + "cell | \n", + "[10x 3' v2, 10x 5' v1] | \n", + "3933.570238 | \n", + "3004.0 | \n", + "
| 15 | \n", + "blood cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "5918.926772 | \n", + "2720.0 | \n", + "
| 16 | \n", + "early pro-B cell | \n", + "cell | \n", + "[10x 3' v3] | \n", + "8281.433811 | \n", + "2572.0 | \n", + "
| 17 | \n", + "effector memory CD8-positive, alpha-beta T cell | \n", + "cell | \n", + "[10x 3' v2, 10x 5' v1] | \n", + "2399.100003 | \n", + "2528.0 | \n", + "
| 18 | \n", + "CD16-positive, CD56-dim natural killer cell, h... | \n", + "cell | \n", + "[10x 5' v1, 10x 5' v2] | \n", + "3584.113028 | \n", + "2512.0 | \n", + "
| 19 | \n", + "naive B cell | \n", + "cell | \n", + "[10x 3' v2, 10x 5' v1, 10x 5' v2] | \n", + "3576.484208 | \n", + "2237.0 | \n", + "
| 20 | \n", + "regulatory T cell | \n", + "cell | \n", + "[10x 3' v2, 10x 5' v1, 10x 5' v2] | \n", + "3835.183022 | \n", + "2007.0 | \n", + "
| 21 | \n", + "memory B cell | \n", + "cell | \n", + "[10x 3' v2, 10x 5' v1, 10x 5' v2] | \n", + "5660.777605 | \n", + "1950.0 | \n", + "
| 22 | \n", + "gamma-delta T cell | \n", + "cell | \n", + "[10x 3' v2, 10x 5' v1, 10x 5' v2] | \n", + "3677.270055 | \n", + "1690.0 | \n", + "
| 23 | \n", + "CD8-positive, alpha-beta memory T cell | \n", + "cell | \n", + "[10x 5' v1, 10x 5' v2] | \n", + "4430.008905 | \n", + "1672.0 | \n", + "
| 24 | \n", + "activated CD4-positive, alpha-beta T cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "3952.758107 | \n", + "1652.0 | \n", + "
| 25 | \n", + "CD4-positive helper T cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "3085.676707 | \n", + "1640.0 | \n", + "
| 26 | \n", + "conventional dendritic cell | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3, 10x 5' v1, 10x 5' v2] | \n", + "9413.930613 | \n", + "1483.0 | \n", + "
| 27 | \n", + "CD4-positive, alpha-beta memory T cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "2184.748499 | \n", + "1333.0 | \n", + "
| 28 | \n", + "activated CD8-positive, alpha-beta T cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "3813.840945 | \n", + "1135.0 | \n", + "
| 29 | \n", + "mature NK T cell | \n", + "cell | \n", + "[10x 3' v3, 10x 5' v1] | \n", + "3387.291002 | \n", + "1110.0 | \n", + "
| \n", + " | cell_type | \n", + "suspension_type | \n", + "assay_list | \n", + "total_mrna_umis_avg | \n", + "n_cells | \n", + "
|---|---|---|---|---|---|
| 0 | \n", + "plasma cell | \n", + "cell | \n", + "[10x 3' v2] | \n", + "5553.572236 | \n", + "15499.0 | \n", + "
| 1 | \n", + "mesenchymal cell | \n", + "cell | \n", + "[10x 3' v2] | \n", + "4525.519896 | \n", + "5780.0 | \n", + "
| 2 | \n", + "T cell | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3] | \n", + "2111.129280 | \n", + "4706.0 | \n", + "
| 3 | \n", + "macrophage | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3] | \n", + "3862.732963 | \n", + "4629.0 | \n", + "
| 4 | \n", + "CD4-positive, alpha-beta T cell | \n", + "cell | \n", + "[10x 3' v2] | \n", + "2028.931384 | \n", + "4371.0 | \n", + "
| 5 | \n", + "CD8-positive, alpha-beta T cell | \n", + "cell | \n", + "[10x 3' v2] | \n", + "1724.007334 | \n", + "3844.0 | \n", + "
| 6 | \n", + "B cell | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3] | \n", + "4313.221224 | \n", + "2755.0 | \n", + "
| 7 | \n", + "fibroblast | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3] | \n", + "9551.070341 | \n", + "1974.0 | \n", + "
| 8 | \n", + "plasmacytoid dendritic cell | \n", + "cell | \n", + "[10x 3' v2] | \n", + "1077.892595 | \n", + "1788.0 | \n", + "
| 9 | \n", + "intestinal epithelial cell | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3] | \n", + "14221.150038 | \n", + "1196.0 | \n", + "
| 10 | \n", + "myeloid leukocyte | \n", + "cell | \n", + "[10x 3' v2] | \n", + "9155.548561 | \n", + "1112.0 | \n", + "
| 11 | \n", + "mast cell | \n", + "cell | \n", + "[10x 3' v2] | \n", + "1820.231397 | \n", + "1016.0 | \n", + "
| 12 | \n", + "regulatory T cell | \n", + "cell | \n", + "[10x 3' v2] | \n", + "2619.770902 | \n", + "876.0 | \n", + "
| 13 | \n", + "enterocyte | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3] | \n", + "19046.254248 | \n", + "785.0 | \n", + "
| 14 | \n", + "mature NK T cell | \n", + "cell | \n", + "[10x 3' v2] | \n", + "6381.814649 | \n", + "669.0 | \n", + "
| 15 | \n", + "naive T cell | \n", + "cell | \n", + "[10x 3' v2] | \n", + "539.665183 | \n", + "397.0 | \n", + "
| 16 | \n", + "monocyte | \n", + "cell | \n", + "[10x 3' v2] | \n", + "4183.078142 | \n", + "392.0 | \n", + "
| 17 | \n", + "conventional dendritic cell | \n", + "cell | \n", + "[10x 3' v2] | \n", + "4333.699789 | \n", + "375.0 | \n", + "
| 18 | \n", + "natural killer cell | \n", + "cell | \n", + "[10x 3' v2] | \n", + "401.460049 | \n", + "351.0 | \n", + "
| 19 | \n", + "dendritic cell | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3] | \n", + "4785.271331 | \n", + "347.0 | \n", + "
| 20 | \n", + "endothelial cell | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3] | \n", + "8962.634515 | \n", + "275.0 | \n", + "
| 21 | \n", + "endothelial cell of lymphatic vessel | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3] | \n", + "19092.907642 | \n", + "255.0 | \n", + "
| 22 | \n", + "blood vessel endothelial cell | \n", + "cell | \n", + "[10x 3' v3] | \n", + "14693.201031 | \n", + "194.0 | \n", + "
| 23 | \n", + "IgG plasma cell | \n", + "cell | \n", + "[10x 3' v2] | \n", + "14230.556150 | \n", + "187.0 | \n", + "
| 24 | \n", + "enteroendocrine cell | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3] | \n", + "23113.061898 | \n", + "176.0 | \n", + "
| 25 | \n", + "intraepithelial lymphocyte | \n", + "cell | \n", + "[10x 3' v2] | \n", + "663.515398 | \n", + "151.0 | \n", + "
| 26 | \n", + "pericyte | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3] | \n", + "7797.837072 | \n", + "147.0 | \n", + "
| 27 | \n", + "glial cell | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3] | \n", + "6974.967147 | \n", + "141.0 | \n", + "
| 28 | \n", + "myofibroblast cell | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3] | \n", + "8356.375296 | \n", + "121.0 | \n", + "
| 29 | \n", + "peripheral nervous system neuron | \n", + "cell | \n", + "[10x 3' v2] | \n", + "6706.427083 | \n", + "96.0 | \n", + "
| \n", + " | cell_type | \n", + "suspension_type | \n", + "assay_list | \n", + "total_mrna_umis_avg | \n", + "n_cells | \n", + "
|---|---|---|---|---|---|
| 0 | \n", + "abnormal cell | \n", + "cell | \n", + "[10x 3' v2] | \n", + "12538.982838 | \n", + "2911.0 | \n", + "
| 1 | \n", + "macrophage | \n", + "cell | \n", + "[10x 3' v2] | \n", + "8449.707044 | \n", + "2236.0 | \n", + "
| 2 | \n", + "kidney collecting duct principal cell | \n", + "cell | \n", + "[10x 3' v3] | \n", + "8449.237204 | \n", + "1569.0 | \n", + "
| 3 | \n", + "kidney loop of Henle thin descending limb epit... | \n", + "cell | \n", + "[10x 3' v3] | \n", + "3534.306313 | \n", + "1283.0 | \n", + "
| 4 | \n", + "T cell | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3] | \n", + "4329.951364 | \n", + "1114.0 | \n", + "
| 5 | \n", + "endothelial cell | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3] | \n", + "5883.656285 | \n", + "875.0 | \n", + "
| 6 | \n", + "kidney loop of Henle thin ascending limb epith... | \n", + "cell | \n", + "[10x 3' v3] | \n", + "5464.683603 | \n", + "866.0 | \n", + "
| 7 | \n", + "kidney loop of Henle thick ascending limb epit... | \n", + "cell | \n", + "[10x 3' v3] | \n", + "7850.607488 | \n", + "851.0 | \n", + "
| 8 | \n", + "epithelial cell of proximal tubule | \n", + "cell | \n", + "[10x 3' v3] | \n", + "4531.826804 | \n", + "486.0 | \n", + "
| 9 | \n", + "kidney collecting duct intercalated cell | \n", + "cell | \n", + "[10x 3' v3] | \n", + "9716.801338 | \n", + "226.0 | \n", + "
| 10 | \n", + "renal interstitial pericyte | \n", + "cell | \n", + "[10x 3' v3] | \n", + "4798.933799 | \n", + "221.0 | \n", + "
| 11 | \n", + "vascular associated smooth muscle cell | \n", + "cell | \n", + "[10x 3' v2] | \n", + "7220.564493 | \n", + "130.0 | \n", + "
| 12 | \n", + "kidney connecting tubule epithelial cell | \n", + "cell | \n", + "[10x 3' v3] | \n", + "12307.425000 | \n", + "114.0 | \n", + "
| 13 | \n", + "B cell | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3] | \n", + "2962.136200 | \n", + "95.0 | \n", + "
| 14 | \n", + "kidney distal convoluted tubule epithelial cell | \n", + "cell | \n", + "[10x 3' v3] | \n", + "8528.461538 | \n", + "78.0 | \n", + "
| 15 | \n", + "conventional dendritic cell | \n", + "cell | \n", + "[10x 3' v3] | \n", + "6221.957729 | \n", + "55.0 | \n", + "
| 16 | \n", + "monocyte | \n", + "cell | \n", + "[10x 3' v3] | \n", + "6540.887446 | \n", + "43.0 | \n", + "
| 17 | \n", + "mature NK T cell | \n", + "cell | \n", + "[10x 3' v3] | \n", + "2961.834656 | \n", + "41.0 | \n", + "
| 18 | \n", + "natural killer cell | \n", + "cell | \n", + "[10x 3' v3] | \n", + "2960.441532 | \n", + "39.0 | \n", + "
| 19 | \n", + "alternatively activated macrophage | \n", + "cell | \n", + "[10x 3' v3] | \n", + "5491.722222 | \n", + "38.0 | \n", + "
| 20 | \n", + "cytotoxic T cell | \n", + "cell | \n", + "[10x 3' v3] | \n", + "2207.071429 | \n", + "35.0 | \n", + "
| 21 | \n", + "plasma cell | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3] | \n", + "14543.025385 | \n", + "34.0 | \n", + "
| 22 | \n", + "mast cell | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3] | \n", + "4800.825000 | \n", + "29.0 | \n", + "
| 23 | \n", + "kidney interstitial fibroblast | \n", + "cell | \n", + "[10x 3' v3] | \n", + "7532.136364 | \n", + "23.0 | \n", + "
| 24 | \n", + "podocyte | \n", + "cell | \n", + "[10x 3' v3] | \n", + "1976.125000 | \n", + "16.0 | \n", + "
| 25 | \n", + "parietal epithelial cell | \n", + "cell | \n", + "[10x 3' v3] | \n", + "2754.111111 | \n", + "9.0 | \n", + "
| 26 | \n", + "leukocyte | \n", + "cell | \n", + "[10x 3' v3] | \n", + "10889.750000 | \n", + "8.0 | \n", + "
| 27 | \n", + "pericyte | \n", + "cell | \n", + "[10x 3' v2] | \n", + "8954.500000 | \n", + "6.0 | \n", + "
| 28 | \n", + "non-classical monocyte | \n", + "cell | \n", + "[10x 3' v3] | \n", + "2831.875000 | \n", + "5.0 | \n", + "
| 29 | \n", + "epithelial cell | \n", + "cell | \n", + "[10x 3' v3] | \n", + "8027.000000 | \n", + "2.0 | \n", + "
| \n", + " | cell_type | \n", + "suspension_type | \n", + "assay_list | \n", + "total_mrna_umis_avg | \n", + "n_cells | \n", + "
|---|---|---|---|---|---|
| 0 | \n", + "hepatic pit cell | \n", + "cell | \n", + "[10x 5' v2] | \n", + "4727.118963 | \n", + "2410.0 | \n", + "
| 1 | \n", + "CD8-positive, alpha-beta T cell | \n", + "cell | \n", + "[10x 5' v2] | \n", + "5183.405436 | \n", + "2290.0 | \n", + "
| 2 | \n", + "Kupffer cell | \n", + "cell | \n", + "[10x 5' v2] | \n", + "9744.089530 | \n", + "2091.0 | \n", + "
| 3 | \n", + "natural killer cell | \n", + "cell | \n", + "[10x 5' v2] | \n", + "5103.622728 | \n", + "2062.0 | \n", + "
| 4 | \n", + "macrophage | \n", + "cell | \n", + "[10x 3' v2, 10x 5' v2] | \n", + "9768.034407 | \n", + "2021.0 | \n", + "
| 5 | \n", + "CD4-positive, alpha-beta T cell | \n", + "cell | \n", + "[10x 5' v2] | \n", + "5362.041940 | \n", + "1677.0 | \n", + "
| 6 | \n", + "monocyte | \n", + "cell | \n", + "[10x 5' v2] | \n", + "9390.691564 | \n", + "1274.0 | \n", + "
| 7 | \n", + "hepatocyte | \n", + "cell | \n", + "[10x 3' v2, 10x 5' v2] | \n", + "12846.595798 | \n", + "989.0 | \n", + "
| 8 | \n", + "periportal region hepatocyte | \n", + "cell | \n", + "[10x 3' v2, 10x 5' v2] | \n", + "14351.769046 | \n", + "967.0 | \n", + "
| 9 | \n", + "mature B cell | \n", + "cell | \n", + "[10x 5' v2] | \n", + "6559.016918 | \n", + "693.0 | \n", + "
| 10 | \n", + "T cell | \n", + "cell | \n", + "[10x 5' v2] | \n", + "4720.298866 | \n", + "634.0 | \n", + "
| 11 | \n", + "centrilobular region hepatocyte | \n", + "cell | \n", + "[10x 3' v2, 10x 5' v2] | \n", + "7285.722313 | \n", + "561.0 | \n", + "
| 12 | \n", + "endothelial cell of pericentral hepatic sinusoid | \n", + "cell | \n", + "[10x 5' v2] | \n", + "5713.951689 | \n", + "387.0 | \n", + "
| 13 | \n", + "endothelial cell of artery | \n", + "cell | \n", + "[10x 5' v2] | \n", + "8799.194535 | \n", + "375.0 | \n", + "
| 14 | \n", + "plasma cell | \n", + "cell | \n", + "[10x 3' v2, 10x 5' v2] | \n", + "21972.115532 | \n", + "360.0 | \n", + "
| 15 | \n", + "alpha-beta T cell | \n", + "cell | \n", + "[10x 3' v2] | \n", + "2459.422123 | \n", + "316.0 | \n", + "
| 16 | \n", + "fibroblast | \n", + "cell | \n", + "[10x 5' v2] | \n", + "8728.158871 | \n", + "294.0 | \n", + "
| 17 | \n", + "intrahepatic cholangiocyte | \n", + "cell | \n", + "[10x 5' v2] | \n", + "16676.755074 | \n", + "275.0 | \n", + "
| 18 | \n", + "endothelial cell of hepatic sinusoid | \n", + "cell | \n", + "[10x 3' v2] | \n", + "3054.446741 | \n", + "259.0 | \n", + "
| 19 | \n", + "inflammatory macrophage | \n", + "cell | \n", + "[10x 3' v2] | \n", + "3583.329430 | \n", + "246.0 | \n", + "
| 20 | \n", + "endothelial cell of periportal hepatic sinusoid | \n", + "cell | \n", + "[10x 3' v2, 10x 5' v2] | \n", + "7138.774523 | \n", + "244.0 | \n", + "
| 21 | \n", + "gamma-delta T cell | \n", + "cell | \n", + "[10x 3' v2] | \n", + "3694.571458 | \n", + "241.0 | \n", + "
| 22 | \n", + "vein endothelial cell | \n", + "cell | \n", + "[10x 5' v2] | \n", + "12179.436024 | \n", + "237.0 | \n", + "
| 23 | \n", + "hepatic stellate cell | \n", + "cell | \n", + "[10x 3' v2, 10x 5' v2] | \n", + "8652.199863 | \n", + "218.0 | \n", + "
| 24 | \n", + "conventional dendritic cell | \n", + "cell | \n", + "[10x 5' v2] | \n", + "13984.999155 | \n", + "198.0 | \n", + "
| 25 | \n", + "neutrophil | \n", + "cell | \n", + "[10x 5' v2] | \n", + "5804.000684 | \n", + "189.0 | \n", + "
| 26 | \n", + "innate lymphoid cell | \n", + "cell | \n", + "[10x 3' v2] | \n", + "2463.088542 | \n", + "98.0 | \n", + "
| 27 | \n", + "erythrocyte | \n", + "cell | \n", + "[10x 3' v2, 10x 5' v2] | \n", + "5520.033088 | \n", + "81.0 | \n", + "
| 28 | \n", + "midzonal region hepatocyte | \n", + "cell | \n", + "[10x 3' v2, 10x 5' v2] | \n", + "14318.738373 | \n", + "81.0 | \n", + "
| 29 | \n", + "mast cell | \n", + "cell | \n", + "[10x 5' v2] | \n", + "5916.731100 | \n", + "35.0 | \n", + "
| \n", + " | cell_type | \n", + "suspension_type | \n", + "assay_list | \n", + "total_mrna_umis_avg | \n", + "n_cells | \n", + "
|---|---|---|---|---|---|
| 0 | \n", + "alveolar macrophage | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3, 10x 5' v1] | \n", + "10122.769629 | \n", + "8713.0 | \n", + "
| 1 | \n", + "malignant cell | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3] | \n", + "7534.843272 | \n", + "7659.0 | \n", + "
| 2 | \n", + "CD8-positive, alpha-beta T cell | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3, 10x 5' v1] | \n", + "2724.637339 | \n", + "7484.0 | \n", + "
| 3 | \n", + "type II pneumocyte | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3, 10x 5' v1] | \n", + "5798.839615 | \n", + "5653.0 | \n", + "
| 4 | \n", + "CD4-positive, alpha-beta T cell | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3, 10x 5' v1] | \n", + "2750.362418 | \n", + "4960.0 | \n", + "
| 5 | \n", + "macrophage | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3, 10x 5' v1] | \n", + "5089.378173 | \n", + "4748.0 | \n", + "
| 6 | \n", + "capillary endothelial cell | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3, 10x 5' v1] | \n", + "2181.541895 | \n", + "3835.0 | \n", + "
| 7 | \n", + "B cell | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3, 10x 5' v1] | \n", + "2724.590943 | \n", + "3471.0 | \n", + "
| 8 | \n", + "classical monocyte | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3, 10x 5' v1] | \n", + "3093.368587 | \n", + "2773.0 | \n", + "
| 9 | \n", + "T cell | \n", + "cell | \n", + "[10x 3' v2, 10x 5' v1] | \n", + "7370.905991 | \n", + "2739.0 | \n", + "
| 10 | \n", + "ciliated columnar cell of tracheobronchial tree | \n", + "cell | \n", + "[10x 5' v1] | \n", + "4193.345603 | \n", + "2600.0 | \n", + "
| 11 | \n", + "plasma cell | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3, 10x 5' v1] | \n", + "10019.185491 | \n", + "2245.0 | \n", + "
| 12 | \n", + "natural killer cell | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3, 10x 5' v1] | \n", + "2403.237844 | \n", + "2240.0 | \n", + "
| 13 | \n", + "regulatory T cell | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3, 10x 5' v1] | \n", + "3348.854801 | \n", + "1990.0 | \n", + "
| 14 | \n", + "vein endothelial cell | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3, 10x 5' v1] | \n", + "2807.620026 | \n", + "1312.0 | \n", + "
| 15 | \n", + "CD1c-positive myeloid dendritic cell | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3, 10x 5' v1] | \n", + "6668.270959 | \n", + "1282.0 | \n", + "
| 16 | \n", + "elicited macrophage | \n", + "cell | \n", + "[10x 5' v1] | \n", + "3078.491411 | \n", + "1262.0 | \n", + "
| 17 | \n", + "type I pneumocyte | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3, 10x 5' v1] | \n", + "1579.006277 | \n", + "1089.0 | \n", + "
| 18 | \n", + "endothelial cell of lymphatic vessel | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3, 10x 5' v1] | \n", + "4473.695015 | \n", + "992.0 | \n", + "
| 19 | \n", + "monocyte | \n", + "cell | \n", + "[10x 3' v2] | \n", + "1756.472251 | \n", + "955.0 | \n", + "
| 20 | \n", + "non-classical monocyte | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3, 10x 5' v1] | \n", + "5149.716216 | \n", + "854.0 | \n", + "
| 21 | \n", + "myeloid cell | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3] | \n", + "13164.515265 | \n", + "850.0 | \n", + "
| 22 | \n", + "epithelial cell of lower respiratory tract | \n", + "cell | \n", + "[10x 5' v1] | \n", + "4569.399684 | \n", + "633.0 | \n", + "
| 23 | \n", + "plasmacytoid dendritic cell | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3, 10x 5' v1] | \n", + "4046.405750 | \n", + "599.0 | \n", + "
| 24 | \n", + "pulmonary interstitial fibroblast | \n", + "cell | \n", + "[10x 5' v1] | \n", + "6221.755952 | \n", + "504.0 | \n", + "
| 25 | \n", + "club cell | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3, 10x 5' v1] | \n", + "8201.865800 | \n", + "473.0 | \n", + "
| 26 | \n", + "pulmonary artery endothelial cell | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3, 10x 5' v1] | \n", + "2583.776376 | \n", + "443.0 | \n", + "
| 27 | \n", + "mast cell | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3, 10x 5' v1] | \n", + "2690.963294 | \n", + "423.0 | \n", + "
| 28 | \n", + "epithelial cell of lung | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3, 10x 5' v1] | \n", + "4280.959934 | \n", + "376.0 | \n", + "
| 29 | \n", + "fibroblast of lung | \n", + "cell | \n", + "[10x 3' v2, 10x 3' v3, 10x 5' v1] | \n", + "4712.523028 | \n", + "372.0 | \n", + "
| \n", + " | cell_type | \n", + "suspension_type | \n", + "assay_list | \n", + "total_mrna_umis_avg | \n", + "n_cells | \n", + "
|---|---|---|---|---|---|
| 0 | \n", + "CD8-alpha-alpha-positive, alpha-beta intraepit... | \n", + "cell | \n", + "[10x 5' v1] | \n", + "5111.774100 | \n", + "2670.0 | \n", + "
| 1 | \n", + "double-positive, alpha-beta thymocyte | \n", + "cell | \n", + "[10x 5' v1] | \n", + "5686.260267 | \n", + "2480.0 | \n", + "
| 2 | \n", + "fibroblast | \n", + "cell | \n", + "[10x 5' v1] | \n", + "4200.292530 | \n", + "2317.0 | \n", + "
| 3 | \n", + "regulatory T cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "5042.266733 | \n", + "655.0 | \n", + "
| 4 | \n", + "CD4-positive, alpha-beta T cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "3255.285000 | \n", + "600.0 | \n", + "
| 5 | \n", + "double negative thymocyte | \n", + "cell | \n", + "[10x 5' v1] | \n", + "6386.249482 | \n", + "566.0 | \n", + "
| 6 | \n", + "CD8-positive, alpha-beta T cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "3775.479545 | \n", + "440.0 | \n", + "
| 7 | \n", + "T cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "6310.054936 | \n", + "204.0 | \n", + "
| 8 | \n", + "alpha-beta T cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "2652.188811 | \n", + "143.0 | \n", + "
| 9 | \n", + "myofibroblast cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "5130.400000 | \n", + "65.0 | \n", + "
| 10 | \n", + "natural killer cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "5052.190315 | \n", + "61.0 | \n", + "
| 11 | \n", + "naive B cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "4916.870370 | \n", + "54.0 | \n", + "
| 12 | \n", + "naive thymus-derived CD4-positive, alpha-beta ... | \n", + "cell | \n", + "[10x 5' v1] | \n", + "4370.133333 | \n", + "45.0 | \n", + "
| 13 | \n", + "endothelial cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "3600.025000 | \n", + "40.0 | \n", + "
| 14 | \n", + "dendritic cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "13199.358974 | \n", + "39.0 | \n", + "
| 15 | \n", + "naive thymus-derived CD8-positive, alpha-beta ... | \n", + "cell | \n", + "[10x 5' v1] | \n", + "5061.655172 | \n", + "29.0 | \n", + "
| 16 | \n", + "gamma-delta T cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "10559.619048 | \n", + "21.0 | \n", + "
| 17 | \n", + "CD4-positive, alpha-beta memory T cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "4732.894737 | \n", + "19.0 | \n", + "
| 18 | \n", + "vascular associated smooth muscle cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "5045.285714 | \n", + "14.0 | \n", + "
| 19 | \n", + "macrophage | \n", + "cell | \n", + "[10x 5' v1] | \n", + "6294.125000 | \n", + "12.0 | \n", + "
| 20 | \n", + "plasmacytoid dendritic cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "5786.166667 | \n", + "12.0 | \n", + "
| 21 | \n", + "B-2 B cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "5530.625000 | \n", + "8.0 | \n", + "
| 22 | \n", + "memory B cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "3141.285714 | \n", + "7.0 | \n", + "
| 23 | \n", + "B-1 B cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "5224.714286 | \n", + "7.0 | \n", + "
| 24 | \n", + "plasma cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "13512.166667 | \n", + "6.0 | \n", + "
| 25 | \n", + "monocyte | \n", + "cell | \n", + "[10x 5' v1] | \n", + "3012.400000 | \n", + "5.0 | \n", + "
| 26 | \n", + "cortical thymic epithelial cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "10784.600000 | \n", + "5.0 | \n", + "
| 27 | \n", + "CD8-positive, alpha-beta memory T cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "3142.200000 | \n", + "5.0 | \n", + "
| 28 | \n", + "erythrocyte | \n", + "cell | \n", + "[10x 5' v1] | \n", + "4468.600000 | \n", + "5.0 | \n", + "
| 29 | \n", + "keratinocyte | \n", + "cell | \n", + "[10x 5' v1] | \n", + "6928.333333 | \n", + "3.0 | \n", + "
| \n", + " | cell_type | \n", + "suspension_type | \n", + "assay_list | \n", + "total_mrna_umis_avg | \n", + "n_cells | \n", + "
|---|---|---|---|---|---|
| 0 | \n", + "cardiac muscle myoblast | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "10005.930778 | \n", + "21050.0 | \n", + "
| 1 | \n", + "fibroblast of cardiac tissue | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "2971.909108 | \n", + "13244.0 | \n", + "
| 2 | \n", + "cardiac endothelial cell | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "2555.895108 | \n", + "8661.0 | \n", + "
| 3 | \n", + "immature innate lymphoid cell | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "2228.929211 | \n", + "4504.0 | \n", + "
| 4 | \n", + "pericyte | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "2306.912812 | \n", + "3264.0 | \n", + "
| 5 | \n", + "mural cell | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "1798.207321 | \n", + "2303.0 | \n", + "
| 6 | \n", + "endothelial cell | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "1662.228321 | \n", + "1742.0 | \n", + "
| 7 | \n", + "myeloid cell | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "2147.811363 | \n", + "1658.0 | \n", + "
| 8 | \n", + "cardiac muscle cell | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "6741.016132 | \n", + "1397.0 | \n", + "
| 9 | \n", + "lymphoid lineage restricted progenitor cell | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "1742.586052 | \n", + "1287.0 | \n", + "
| 10 | \n", + "smooth muscle myoblast | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "3087.490577 | \n", + "846.0 | \n", + "
| 11 | \n", + "neuronal receptor cell | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "2132.948445 | \n", + "665.0 | \n", + "
| 12 | \n", + "lymphocyte | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "1056.483810 | \n", + "252.0 | \n", + "
| 13 | \n", + "mast cell | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "1940.973208 | \n", + "224.0 | \n", + "
| 14 | \n", + "adipocyte of epicardial fat of left ventricle | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "6209.791238 | \n", + "201.0 | \n", + "
| 15 | \n", + "cardiac neuron | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "1477.633553 | \n", + "115.0 | \n", + "
| 16 | \n", + "adipocyte | \n", + "nucleus | \n", + "[10x 3' v3] | \n", + "4806.500000 | \n", + "2.0 | \n", + "
| \n", + " | cell_type | \n", + "suspension_type | \n", + "assay_list | \n", + "total_mrna_umis_avg | \n", + "n_cells | \n", + "
|---|---|---|---|---|---|
| 0 | \n", + "tracheal goblet cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "11535.702018 | \n", + "2020.0 | \n", + "
| 1 | \n", + "basal cell of epithelium of trachea | \n", + "cell | \n", + "[10x 5' v1] | \n", + "8211.102237 | \n", + "1159.0 | \n", + "
| 2 | \n", + "secretory cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "8674.336407 | \n", + "1065.0 | \n", + "
| 3 | \n", + "ciliated cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "6560.115789 | \n", + "646.0 | \n", + "
| 4 | \n", + "CD8-positive, alpha-beta memory T cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "1933.067823 | \n", + "338.0 | \n", + "
| 5 | \n", + "memory B cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "3113.299020 | \n", + "204.0 | \n", + "
| 6 | \n", + "dendritic cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "9231.552545 | \n", + "163.0 | \n", + "
| 7 | \n", + "multi-ciliated epithelial cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "10402.805195 | \n", + "78.0 | \n", + "
| 8 | \n", + "Langerhans cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "4117.785714 | \n", + "50.0 | \n", + "
| 9 | \n", + "monocyte | \n", + "cell | \n", + "[10x 5' v1] | \n", + "2883.625000 | \n", + "49.0 | \n", + "
| 10 | \n", + "pulmonary ionocyte | \n", + "cell | \n", + "[10x 5' v1] | \n", + "5945.078947 | \n", + "34.0 | \n", + "
| 11 | \n", + "naive T cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "1828.140625 | \n", + "33.0 | \n", + "
| 12 | \n", + "neutrophil | \n", + "cell | \n", + "[10x 5' v1] | \n", + "1356.375000 | \n", + "32.0 | \n", + "
| 13 | \n", + "CD16-positive, CD56-dim natural killer cell, h... | \n", + "cell | \n", + "[10x 5' v1] | \n", + "1954.695652 | \n", + "24.0 | \n", + "
| 14 | \n", + "duct epithelial cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "11939.777778 | \n", + "24.0 | \n", + "
| 15 | \n", + "club cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "8848.211538 | \n", + "17.0 | \n", + "
| 16 | \n", + "gamma-delta T cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "2373.533333 | \n", + "15.0 | \n", + "
| 17 | \n", + "macrophage | \n", + "cell | \n", + "[10x 5' v1] | \n", + "1517.611111 | \n", + "12.0 | \n", + "
| 18 | \n", + "alternatively activated macrophage | \n", + "cell | \n", + "[10x 5' v1] | \n", + "5956.777778 | \n", + "10.0 | \n", + "
| 19 | \n", + "mature NK T cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "2132.125000 | \n", + "8.0 | \n", + "
| 20 | \n", + "plasmacytoid dendritic cell, human | \n", + "cell | \n", + "[10x 5' v1] | \n", + "6327.700000 | \n", + "7.0 | \n", + "
| 21 | \n", + "mast cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "2447.333333 | \n", + "7.0 | \n", + "
| 22 | \n", + "innate lymphoid cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "2774.571429 | \n", + "7.0 | \n", + "
| 23 | \n", + "squamous epithelial cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "9096.050000 | \n", + "7.0 | \n", + "
| 24 | \n", + "CD16-negative, CD56-bright natural killer cell... | \n", + "cell | \n", + "[10x 5' v1] | \n", + "2479.500000 | \n", + "7.0 | \n", + "
| 25 | \n", + "naive B cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "1779.333333 | \n", + "3.0 | \n", + "
| 26 | \n", + "plasma cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "9270.333333 | \n", + "3.0 | \n", + "
| 27 | \n", + "B cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "5333.666667 | \n", + "3.0 | \n", + "
| 28 | \n", + "regulatory T cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "1655.500000 | \n", + "2.0 | \n", + "
| 29 | \n", + "T cell | \n", + "cell | \n", + "[10x 5' v1] | \n", + "5343.000000 | \n", + "2.0 | \n", + "
| \n", + " | cell_type | \n", + "assay | \n", + "suspension_type | \n", + "tissue | \n", + "sex | \n", + "disease | \n", + "total_mrna_umis | \n", + "
|---|---|---|---|---|---|---|---|
| 0 | \n", + "GABAergic neuron | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "brain | \n", + "male | \n", + "normal | \n", + "5527.708887 | \n", + "
| 1 | \n", + "glutamatergic neuron | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "brain | \n", + "male | \n", + "normal | \n", + "10683.399862 | \n", + "
| 2 | \n", + "astrocyte | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "brain | \n", + "male | \n", + "normal | \n", + "5380.963698 | \n", + "
| 3 | \n", + "oligodendrocyte | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "brain | \n", + "male | \n", + "normal | \n", + "5083.603161 | \n", + "
| 4 | \n", + "oligodendrocyte precursor cell | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "brain | \n", + "male | \n", + "normal | \n", + "6609.696174 | \n", + "
| 5 | \n", + "microglial cell | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "brain | \n", + "male | \n", + "normal | \n", + "3645.962305 | \n", + "
| 6 | \n", + "cerebellar granule cell | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "brain | \n", + "male | \n", + "normal | \n", + "3935.779702 | \n", + "
| 7 | \n", + "endothelial cell | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "brain | \n", + "male | \n", + "normal | \n", + "3115.828938 | \n", + "
| 8 | \n", + "classical monocyte | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "3922.025000 | \n", + "
| 9 | \n", + "non-classical monocyte | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "8436.318182 | \n", + "
| 10 | \n", + "natural killer cell | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "2923.925418 | \n", + "
| 11 | \n", + "CD4-positive, alpha-beta T cell | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "3285.603705 | \n", + "
| 12 | \n", + "CD8-positive, alpha-beta T cell | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "3720.503504 | \n", + "
| 13 | \n", + "CD8-positive, alpha-beta cytotoxic T cell | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "5061.393152 | \n", + "
| 14 | \n", + "CD8-positive, alpha-beta memory T cell | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "5221.671616 | \n", + "
| 15 | \n", + "naive thymus-derived CD4-positive, alpha-beta ... | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "5649.398766 | \n", + "
| 16 | \n", + "naive thymus-derived CD8-positive, alpha-beta ... | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "6333.568573 | \n", + "
| 17 | \n", + "naive B cell | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "4984.057779 | \n", + "
| 18 | \n", + "memory B cell | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "6689.483383 | \n", + "
| 19 | \n", + "regulatory T cell | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "5216.285765 | \n", + "
| 20 | \n", + "gamma-delta T cell | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "4950.552077 | \n", + "
| 21 | \n", + "conventional dendritic cell | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "14936.870968 | \n", + "
| 22 | \n", + "enterocyte | \n", + "10x 3' v2 | \n", + "cell | \n", + "small intestine | \n", + "male | \n", + "normal | \n", + "8772.175057 | \n", + "
| 23 | \n", + "endothelial cell | \n", + "10x 3' v2 | \n", + "cell | \n", + "small intestine | \n", + "male | \n", + "normal | \n", + "10069.068281 | \n", + "
| 24 | \n", + "enteroendocrine cell | \n", + "10x 3' v2 | \n", + "cell | \n", + "small intestine | \n", + "male | \n", + "normal | \n", + "10636.632432 | \n", + "
| 25 | \n", + "pericyte | \n", + "10x 3' v2 | \n", + "cell | \n", + "small intestine | \n", + "male | \n", + "normal | \n", + "4604.858974 | \n", + "
| 26 | \n", + "intestine goblet cell | \n", + "10x 3' v2 | \n", + "cell | \n", + "small intestine | \n", + "male | \n", + "normal | \n", + "7435.644048 | \n", + "
| 27 | \n", + "kidney collecting duct principal cell | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "kidney | \n", + "male | \n", + "normal | \n", + "6444.458460 | \n", + "
| 28 | \n", + "kidney loop of Henle thin descending limb epit... | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "kidney | \n", + "male | \n", + "normal | \n", + "4345.735849 | \n", + "
| 29 | \n", + "kidney loop of Henle thin ascending limb epith... | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "kidney | \n", + "male | \n", + "normal | \n", + "5964.088479 | \n", + "
| 30 | \n", + "kidney loop of Henle thick ascending limb epit... | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "kidney | \n", + "male | \n", + "normal | \n", + "4911.535804 | \n", + "
| 31 | \n", + "epithelial cell of proximal tubule | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "kidney | \n", + "male | \n", + "normal | \n", + "4491.198843 | \n", + "
| 32 | \n", + "kidney collecting duct intercalated cell | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "kidney | \n", + "male | \n", + "normal | \n", + "4906.310584 | \n", + "
| 33 | \n", + "renal interstitial pericyte | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "kidney | \n", + "male | \n", + "normal | \n", + "3130.350171 | \n", + "
| 34 | \n", + "hepatic pit cell | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "2761.142458 | \n", + "
| 35 | \n", + "Kupffer cell | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "6850.818612 | \n", + "
| 36 | \n", + "hepatocyte | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "11532.500000 | \n", + "
| 37 | \n", + "periportal region hepatocyte | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "4790.702890 | \n", + "
| 38 | \n", + "centrilobular region hepatocyte | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "9280.724561 | \n", + "
| 39 | \n", + "endothelial cell of pericentral hepatic sinusoid | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "2734.614608 | \n", + "
| 40 | \n", + "endothelial cell of artery | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "3987.627119 | \n", + "
| 41 | \n", + "fibroblast | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "7274.262295 | \n", + "
| 42 | \n", + "intrahepatic cholangiocyte | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "6998.971698 | \n", + "
| 43 | \n", + "endothelial cell of hepatic sinusoid | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "3836.788282 | \n", + "
| 44 | \n", + "hepatic stellate cell | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "4090.862637 | \n", + "
| 45 | \n", + "alveolar macrophage | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "8422.037378 | \n", + "
| 46 | \n", + "type II pneumocyte | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "6109.480329 | \n", + "
| 47 | \n", + "capillary endothelial cell | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "3094.649239 | \n", + "
| 48 | \n", + "ciliated columnar cell of tracheobronchial tree | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "5754.694686 | \n", + "
| 49 | \n", + "type I pneumocyte | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "2744.064915 | \n", + "
| 50 | \n", + "epithelial cell of lower respiratory tract | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "5956.795231 | \n", + "
| 51 | \n", + "pulmonary interstitial fibroblast | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "5294.602205 | \n", + "
| 52 | \n", + "club cell | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "9484.199912 | \n", + "
| 53 | \n", + "pulmonary artery endothelial cell | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "2321.547941 | \n", + "
| 54 | \n", + "epithelial cell of lung | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "15015.278925 | \n", + "
| 55 | \n", + "fibroblast of lung | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "6561.739316 | \n", + "
| 56 | \n", + "cardiac muscle myoblast | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "heart | \n", + "male | \n", + "normal | \n", + "11938.346771 | \n", + "
| 57 | \n", + "fibroblast of cardiac tissue | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "heart | \n", + "male | \n", + "normal | \n", + "3099.779698 | \n", + "
| 58 | \n", + "cardiac endothelial cell | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "heart | \n", + "male | \n", + "normal | \n", + "2268.612916 | \n", + "
| 59 | \n", + "cardiac muscle cell | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "heart | \n", + "male | \n", + "normal | \n", + "8017.024743 | \n", + "
| 60 | \n", + "cardiac neuron | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "heart | \n", + "male | \n", + "normal | \n", + "2238.708571 | \n", + "
| \n", + " | feature_name | \n", + "
|---|---|
| ENSG00000187642 | \n", + "PERM1 | \n", + "
| ENSG00000078808 | \n", + "SDF4 | \n", + "
| ENSG00000272106 | \n", + "ENSG00000272106 | \n", + "
| ENSG00000162585 | \n", + "FAAP20 | \n", + "
| ENSG00000272088 | \n", + "ENSG00000272088 | \n", + "
| ... | \n", + "... | \n", + "
| ENSG00000224281 | \n", + "SLC25A5-AS1 | \n", + "
| ENSG00000122121 | \n", + "XPNPEP2 | \n", + "
| ENSG00000228836 | \n", + "CT45A5 | \n", + "
| ENSG00000231937 | \n", + "ENSG00000231937 | \n", + "
| ENSG00000268916 | \n", + "CSAG3 | \n", + "
36601 rows × 1 columns
\n", + "| \n", + " | cell_type | \n", + "assay | \n", + "suspension_type | \n", + "tissue | \n", + "sex | \n", + "disease | \n", + "total_mrna_umis | \n", + "
|---|---|---|---|---|---|---|---|
| 0 | \n", + "GABAergic neuron | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "brain | \n", + "male | \n", + "normal | \n", + "5527.708887 | \n", + "
| 1 | \n", + "glutamatergic neuron | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "brain | \n", + "male | \n", + "normal | \n", + "10683.399862 | \n", + "
| 2 | \n", + "astrocyte | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "brain | \n", + "male | \n", + "normal | \n", + "5380.963698 | \n", + "
| 3 | \n", + "oligodendrocyte | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "brain | \n", + "male | \n", + "normal | \n", + "5083.603161 | \n", + "
| 4 | \n", + "oligodendrocyte precursor cell | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "brain | \n", + "male | \n", + "normal | \n", + "6609.696174 | \n", + "
| 5 | \n", + "microglial cell | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "brain | \n", + "male | \n", + "normal | \n", + "3645.962305 | \n", + "
| 6 | \n", + "cerebellar granule cell | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "brain | \n", + "male | \n", + "normal | \n", + "3935.779702 | \n", + "
| 7 | \n", + "endothelial cell | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "brain | \n", + "male | \n", + "normal | \n", + "3115.828938 | \n", + "
| 8 | \n", + "classical monocyte | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "3922.025000 | \n", + "
| 9 | \n", + "non-classical monocyte | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "8436.318182 | \n", + "
| 10 | \n", + "natural killer cell | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "2923.925418 | \n", + "
| 11 | \n", + "CD4-positive, alpha-beta T cell | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "3285.603705 | \n", + "
| 12 | \n", + "CD8-positive, alpha-beta T cell | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "3720.503504 | \n", + "
| 13 | \n", + "CD8-positive, alpha-beta cytotoxic T cell | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "5061.393152 | \n", + "
| 14 | \n", + "CD8-positive, alpha-beta memory T cell | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "5221.671616 | \n", + "
| 15 | \n", + "naive thymus-derived CD4-positive, alpha-beta ... | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "5649.398766 | \n", + "
| 16 | \n", + "naive thymus-derived CD8-positive, alpha-beta ... | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "6333.568573 | \n", + "
| 17 | \n", + "naive B cell | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "4984.057779 | \n", + "
| 18 | \n", + "memory B cell | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "6689.483383 | \n", + "
| 19 | \n", + "regulatory T cell | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "5216.285765 | \n", + "
| 20 | \n", + "gamma-delta T cell | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "4950.552077 | \n", + "
| 21 | \n", + "conventional dendritic cell | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "14936.870968 | \n", + "
| 22 | \n", + "enterocyte | \n", + "10x 3' v2 | \n", + "cell | \n", + "small intestine | \n", + "male | \n", + "normal | \n", + "8772.175057 | \n", + "
| 23 | \n", + "endothelial cell | \n", + "10x 3' v2 | \n", + "cell | \n", + "small intestine | \n", + "male | \n", + "normal | \n", + "10069.068281 | \n", + "
| 24 | \n", + "enteroendocrine cell | \n", + "10x 3' v2 | \n", + "cell | \n", + "small intestine | \n", + "male | \n", + "normal | \n", + "10636.632432 | \n", + "
| 25 | \n", + "pericyte | \n", + "10x 3' v2 | \n", + "cell | \n", + "small intestine | \n", + "male | \n", + "normal | \n", + "4604.858974 | \n", + "
| 26 | \n", + "intestine goblet cell | \n", + "10x 3' v2 | \n", + "cell | \n", + "small intestine | \n", + "male | \n", + "normal | \n", + "7435.644048 | \n", + "
| 27 | \n", + "kidney collecting duct principal cell | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "kidney | \n", + "male | \n", + "normal | \n", + "6444.458460 | \n", + "
| 28 | \n", + "kidney loop of Henle thin descending limb epit... | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "kidney | \n", + "male | \n", + "normal | \n", + "4345.735849 | \n", + "
| 29 | \n", + "kidney loop of Henle thin ascending limb epith... | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "kidney | \n", + "male | \n", + "normal | \n", + "5964.088479 | \n", + "
| 30 | \n", + "kidney loop of Henle thick ascending limb epit... | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "kidney | \n", + "male | \n", + "normal | \n", + "4911.535804 | \n", + "
| 31 | \n", + "epithelial cell of proximal tubule | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "kidney | \n", + "male | \n", + "normal | \n", + "4491.198843 | \n", + "
| 32 | \n", + "kidney collecting duct intercalated cell | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "kidney | \n", + "male | \n", + "normal | \n", + "4906.310584 | \n", + "
| 33 | \n", + "renal interstitial pericyte | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "kidney | \n", + "male | \n", + "normal | \n", + "3130.350171 | \n", + "
| 34 | \n", + "hepatic pit cell | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "2761.142458 | \n", + "
| 35 | \n", + "Kupffer cell | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "6850.818612 | \n", + "
| 36 | \n", + "hepatocyte | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "11532.500000 | \n", + "
| 37 | \n", + "periportal region hepatocyte | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "4790.702890 | \n", + "
| 38 | \n", + "centrilobular region hepatocyte | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "9280.724561 | \n", + "
| 39 | \n", + "endothelial cell of pericentral hepatic sinusoid | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "2734.614608 | \n", + "
| 40 | \n", + "endothelial cell of artery | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "3987.627119 | \n", + "
| 41 | \n", + "fibroblast | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "7274.262295 | \n", + "
| 42 | \n", + "intrahepatic cholangiocyte | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "6998.971698 | \n", + "
| 43 | \n", + "endothelial cell of hepatic sinusoid | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "3836.788282 | \n", + "
| 44 | \n", + "hepatic stellate cell | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "4090.862637 | \n", + "
| 45 | \n", + "alveolar macrophage | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "8422.037378 | \n", + "
| 46 | \n", + "type II pneumocyte | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "6109.480329 | \n", + "
| 47 | \n", + "capillary endothelial cell | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "3094.649239 | \n", + "
| 48 | \n", + "ciliated columnar cell of tracheobronchial tree | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "5754.694686 | \n", + "
| 49 | \n", + "type I pneumocyte | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "2744.064915 | \n", + "
| 50 | \n", + "epithelial cell of lower respiratory tract | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "5956.795231 | \n", + "
| 51 | \n", + "pulmonary interstitial fibroblast | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "5294.602205 | \n", + "
| 52 | \n", + "club cell | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "9484.199912 | \n", + "
| 53 | \n", + "pulmonary artery endothelial cell | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "2321.547941 | \n", + "
| 54 | \n", + "epithelial cell of lung | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "15015.278925 | \n", + "
| 55 | \n", + "fibroblast of lung | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "6561.739316 | \n", + "
| 56 | \n", + "cardiac muscle myoblast | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "heart | \n", + "male | \n", + "normal | \n", + "11938.346771 | \n", + "
| 57 | \n", + "fibroblast of cardiac tissue | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "heart | \n", + "male | \n", + "normal | \n", + "3099.779698 | \n", + "
| 58 | \n", + "cardiac endothelial cell | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "heart | \n", + "male | \n", + "normal | \n", + "2268.612916 | \n", + "
| 59 | \n", + "cardiac muscle cell | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "heart | \n", + "male | \n", + "normal | \n", + "8017.024743 | \n", + "
| 60 | \n", + "cardiac neuron | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "heart | \n", + "male | \n", + "normal | \n", + "2238.708571 | \n", + "
| \n", + " | cell_type | \n", + "assay | \n", + "suspension_type | \n", + "tissue | \n", + "sex | \n", + "disease | \n", + "total_mrna_umis | \n", + "
|---|---|---|---|---|---|---|---|
| 0 | \n", + "GABAergic neuron | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "brain | \n", + "male | \n", + "normal | \n", + "5527.708887 | \n", + "
| 1 | \n", + "glutamatergic neuron | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "brain | \n", + "male | \n", + "normal | \n", + "10683.399862 | \n", + "
| 2 | \n", + "astrocyte | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "brain | \n", + "male | \n", + "normal | \n", + "5380.963698 | \n", + "
| 3 | \n", + "oligodendrocyte | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "brain | \n", + "male | \n", + "normal | \n", + "5083.603161 | \n", + "
| 4 | \n", + "oligodendrocyte precursor cell | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "brain | \n", + "male | \n", + "normal | \n", + "6609.696174 | \n", + "
| 5 | \n", + "microglial cell | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "brain | \n", + "male | \n", + "normal | \n", + "3645.962305 | \n", + "
| 6 | \n", + "cerebellar granule cell | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "brain | \n", + "male | \n", + "normal | \n", + "3935.779702 | \n", + "
| 7 | \n", + "endothelial cell | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "brain | \n", + "male | \n", + "normal | \n", + "3115.828938 | \n", + "
| 8 | \n", + "classical monocyte | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "3922.025000 | \n", + "
| 9 | \n", + "non-classical monocyte | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "8436.318182 | \n", + "
| 10 | \n", + "natural killer cell | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "2923.925418 | \n", + "
| 11 | \n", + "CD4-positive, alpha-beta T cell | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "3285.603705 | \n", + "
| 12 | \n", + "CD8-positive, alpha-beta T cell | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "3720.503504 | \n", + "
| 13 | \n", + "CD8-positive, alpha-beta cytotoxic T cell | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "5061.393152 | \n", + "
| 14 | \n", + "CD8-positive, alpha-beta memory T cell | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "5221.671616 | \n", + "
| 15 | \n", + "naive thymus-derived CD4-positive, alpha-beta ... | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "5649.398766 | \n", + "
| 16 | \n", + "naive thymus-derived CD8-positive, alpha-beta ... | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "6333.568573 | \n", + "
| 17 | \n", + "naive B cell | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "4984.057779 | \n", + "
| 18 | \n", + "memory B cell | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "6689.483383 | \n", + "
| 19 | \n", + "regulatory T cell | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "5216.285765 | \n", + "
| 20 | \n", + "gamma-delta T cell | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "4950.552077 | \n", + "
| 21 | \n", + "conventional dendritic cell | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "14936.870968 | \n", + "
| 22 | \n", + "enterocyte | \n", + "10x 3' v2 | \n", + "cell | \n", + "small intestine | \n", + "male | \n", + "normal | \n", + "8772.175057 | \n", + "
| 23 | \n", + "endothelial cell | \n", + "10x 3' v2 | \n", + "cell | \n", + "small intestine | \n", + "male | \n", + "normal | \n", + "10069.068281 | \n", + "
| 24 | \n", + "enteroendocrine cell | \n", + "10x 3' v2 | \n", + "cell | \n", + "small intestine | \n", + "male | \n", + "normal | \n", + "10636.632432 | \n", + "
| 25 | \n", + "pericyte | \n", + "10x 3' v2 | \n", + "cell | \n", + "small intestine | \n", + "male | \n", + "normal | \n", + "4604.858974 | \n", + "
| 26 | \n", + "intestine goblet cell | \n", + "10x 3' v2 | \n", + "cell | \n", + "small intestine | \n", + "male | \n", + "normal | \n", + "7435.644048 | \n", + "
| 27 | \n", + "kidney collecting duct principal cell | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "kidney | \n", + "male | \n", + "normal | \n", + "6444.458460 | \n", + "
| 28 | \n", + "kidney loop of Henle thin descending limb epit... | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "kidney | \n", + "male | \n", + "normal | \n", + "4345.735849 | \n", + "
| 29 | \n", + "kidney loop of Henle thin ascending limb epith... | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "kidney | \n", + "male | \n", + "normal | \n", + "5964.088479 | \n", + "
| 30 | \n", + "kidney loop of Henle thick ascending limb epit... | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "kidney | \n", + "male | \n", + "normal | \n", + "4911.535804 | \n", + "
| 31 | \n", + "epithelial cell of proximal tubule | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "kidney | \n", + "male | \n", + "normal | \n", + "4491.198843 | \n", + "
| 32 | \n", + "kidney collecting duct intercalated cell | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "kidney | \n", + "male | \n", + "normal | \n", + "4906.310584 | \n", + "
| 33 | \n", + "renal interstitial pericyte | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "kidney | \n", + "male | \n", + "normal | \n", + "3130.350171 | \n", + "
| 34 | \n", + "hepatic pit cell | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "2761.142458 | \n", + "
| 35 | \n", + "Kupffer cell | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "6850.818612 | \n", + "
| 36 | \n", + "hepatocyte | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "11532.500000 | \n", + "
| 37 | \n", + "periportal region hepatocyte | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "4790.702890 | \n", + "
| 38 | \n", + "centrilobular region hepatocyte | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "9280.724561 | \n", + "
| 39 | \n", + "endothelial cell of pericentral hepatic sinusoid | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "2734.614608 | \n", + "
| 40 | \n", + "endothelial cell of artery | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "3987.627119 | \n", + "
| 41 | \n", + "fibroblast | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "7274.262295 | \n", + "
| 42 | \n", + "intrahepatic cholangiocyte | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "6998.971698 | \n", + "
| 43 | \n", + "endothelial cell of hepatic sinusoid | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "3836.788282 | \n", + "
| 44 | \n", + "hepatic stellate cell | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "4090.862637 | \n", + "
| 45 | \n", + "alveolar macrophage | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "8422.037378 | \n", + "
| 46 | \n", + "type II pneumocyte | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "6109.480329 | \n", + "
| 47 | \n", + "capillary endothelial cell | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "3094.649239 | \n", + "
| 48 | \n", + "ciliated columnar cell of tracheobronchial tree | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "5754.694686 | \n", + "
| 49 | \n", + "type I pneumocyte | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "2744.064915 | \n", + "
| 50 | \n", + "epithelial cell of lower respiratory tract | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "5956.795231 | \n", + "
| 51 | \n", + "pulmonary interstitial fibroblast | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "5294.602205 | \n", + "
| 52 | \n", + "club cell | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "9484.199912 | \n", + "
| 53 | \n", + "pulmonary artery endothelial cell | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "2321.547941 | \n", + "
| 54 | \n", + "epithelial cell of lung | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "15015.278925 | \n", + "
| 55 | \n", + "fibroblast of lung | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "6561.739316 | \n", + "
| 56 | \n", + "cardiac muscle myoblast | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "heart | \n", + "male | \n", + "normal | \n", + "11938.346771 | \n", + "
| 57 | \n", + "fibroblast of cardiac tissue | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "heart | \n", + "male | \n", + "normal | \n", + "3099.779698 | \n", + "
| 58 | \n", + "cardiac endothelial cell | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "heart | \n", + "male | \n", + "normal | \n", + "2268.612916 | \n", + "
| 59 | \n", + "cardiac muscle cell | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "heart | \n", + "male | \n", + "normal | \n", + "8017.024743 | \n", + "
| 60 | \n", + "cardiac neuron | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "heart | \n", + "male | \n", + "normal | \n", + "2238.708571 | \n", + "
| \n", + " | cell_type | \n", + "assay | \n", + "suspension_type | \n", + "tissue | \n", + "sex | \n", + "disease | \n", + "total_mrna_umis | \n", + "r_squared | \n", + "
|---|---|---|---|---|---|---|---|---|
| 7 | \n", + "endothelial cell | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "brain | \n", + "male | \n", + "normal | \n", + "3115.828938 | \n", + "0.838061 | \n", + "
| 60 | \n", + "cardiac neuron | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "heart | \n", + "male | \n", + "normal | \n", + "2238.708571 | \n", + "0.826051 | \n", + "
| 50 | \n", + "epithelial cell of lower respiratory tract | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "5956.795231 | \n", + "0.821417 | \n", + "
| 8 | \n", + "classical monocyte | \n", + "10x 5' v2 | \n", + "cell | \n", + "blood | \n", + "male | \n", + "normal | \n", + "3922.025000 | \n", + "0.818895 | \n", + "
| 32 | \n", + "kidney collecting duct intercalated cell | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "kidney | \n", + "male | \n", + "normal | \n", + "4906.310584 | \n", + "0.818298 | \n", + "
| 27 | \n", + "kidney collecting duct principal cell | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "kidney | \n", + "male | \n", + "normal | \n", + "6444.458460 | \n", + "0.809279 | \n", + "
| 54 | \n", + "epithelial cell of lung | \n", + "10x 5' v1 | \n", + "cell | \n", + "lung | \n", + "male | \n", + "normal | \n", + "15015.278925 | \n", + "0.808601 | \n", + "
| 28 | \n", + "kidney loop of Henle thin descending limb epit... | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "kidney | \n", + "male | \n", + "normal | \n", + "4345.735849 | \n", + "0.806585 | \n", + "
| 40 | \n", + "endothelial cell of artery | \n", + "10x 3' v2 | \n", + "cell | \n", + "liver | \n", + "male | \n", + "normal | \n", + "3987.627119 | \n", + "0.797075 | \n", + "
| 29 | \n", + "kidney loop of Henle thin ascending limb epith... | \n", + "10x 3' v3 | \n", + "nucleus | \n", + "kidney | \n", + "male | \n", + "normal | \n", + "5964.088479 | \n", + "0.694047 | \n", + "
| \n", + " | NAME | \n", + "nGene | \n", + "nUMI | \n", + "percent.mito | \n", + "Cluster | \n", + "CellType | \n", + "Experiment | \n", + "Method | \n", + "
|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "TYPE | \n", + "numeric | \n", + "numeric | \n", + "numeric | \n", + "group | \n", + "group | \n", + "group | \n", + "group | \n", + "
| 1 | \n", + "pbmc1_SM2_Cell_108 | \n", + "2200 | \n", + "437125 | \n", + "0.0297434465355702 | \n", + "0 | \n", + "Cytotoxic T cell | \n", + "pbmc1 | \n", + "Smart-seq2 | \n", + "
| 2 | \n", + "pbmc1_SM2_Cell_115 | \n", + "2438 | \n", + "335596 | \n", + "0.0311521658159055 | \n", + "0 | \n", + "Cytotoxic T cell | \n", + "pbmc1 | \n", + "Smart-seq2 | \n", + "
| 3 | \n", + "pbmc1_SM2_Cell_133 | \n", + "1874 | \n", + "302204 | \n", + "0.0431128105727693 | \n", + "0 | \n", + "Cytotoxic T cell | \n", + "pbmc1 | \n", + "Smart-seq2 | \n", + "
| 4 | \n", + "pbmc1_SM2_Cell_142 | \n", + "2480 | \n", + "377420 | \n", + "0.0260323569927476 | \n", + "0 | \n", + "Cytotoxic T cell | \n", + "pbmc1 | \n", + "Smart-seq2 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "
| 31017 | \n", + "pbmc2_inDrops_1_TAGTCTCT.GAGCCTTA.ATCCGCTA | \n", + "453 | \n", + "717 | \n", + "0.097629009762901 | \n", + "11 | \n", + "Plasmacytoid dendritic cell | \n", + "pbmc2 | \n", + "inDrops | \n", + "
| 31018 | \n", + "pbmc2_inDrops_1_TCCAGAAG.TTATGCGA.TAAGACGG | \n", + "592 | \n", + "938 | \n", + "0.035181236673774 | \n", + "11 | \n", + "Plasmacytoid dendritic cell | \n", + "pbmc2 | \n", + "inDrops | \n", + "
| 31019 | \n", + "pbmc2_inDrops_1_TGAATCCT.GAGCCTTA.CCCAAGCA | \n", + "406 | \n", + "662 | \n", + "0.138972809667674 | \n", + "11 | \n", + "Plasmacytoid dendritic cell | \n", + "pbmc2 | \n", + "inDrops | \n", + "
| 31020 | \n", + "pbmc2_inDrops_1_TGAATCCT.TTATGCGA.CATCTCCC | \n", + "1001 | \n", + "2066 | \n", + "0.0556631171345595 | \n", + "11 | \n", + "Plasmacytoid dendritic cell | \n", + "pbmc2 | \n", + "inDrops | \n", + "
| 31021 | \n", + "pbmc2_inDrops_1_TGAGCACA.GAGCCTTA.CGAGTCTG | \n", + "184 | \n", + "253 | \n", + "0.146245059288538 | \n", + "11 | \n", + "Plasmacytoid dendritic cell | \n", + "pbmc2 | \n", + "inDrops | \n", + "
31022 rows × 8 columns
\n", + "| \n", + " | cell_type | \n", + "predicted_cell_type | \n", + "
|---|---|---|
| 51973649 | \n", + "neural cell | \n", + "neuron | \n", + "
| 162899660 | \n", + "neuron | \n", + "endothelial cell | \n", + "
| 11126346 | \n", + "respiratory epithelial cell | \n", + "type II pneumocyte | \n", + "
| 3561915 | \n", + "epithelial cell | \n", + "keratinocyte | \n", + "
| 6584585 | \n", + "naive thymus-derived CD4-positive, alpha-beta ... | \n", + "naive thymus-derived CD4-positive, alpha-beta ... | \n", + "
| 86231550 | \n", + "lamp5 GABAergic cortical interneuron | \n", + "lamp5 GABAergic cortical interneuron | \n", + "
| 113834925 | \n", + "Purkinje cell | \n", + "ciliated cell | \n", + "
| 113494677 | \n", + "cortical cell of adrenal gland | \n", + "ciliated cell | \n", + "
| 33264029 | \n", + "oligodendrocyte precursor cell | \n", + "oligodendrocyte precursor cell | \n", + "
| 21357920 | \n", + "basal cell | \n", + "mesothelial cell | \n", + "
| 3156818 | \n", + "secretory cell | \n", + "platelet | \n", + "
| 27128798 | \n", + "CD8-positive, alpha-beta T cell | \n", + "mucosal invariant T cell | \n", + "
| 77027308 | \n", + "alveolar macrophage | \n", + "macrophage | \n", + "
| 62320806 | \n", + "microglial cell | \n", + "microglial cell | \n", + "
| 53191367 | \n", + "alveolar macrophage | \n", + "alveolar macrophage | \n", + "
| 53340161 | \n", + "B cell | \n", + "memory B cell | \n", + "
| 150849580 | \n", + "T cell | \n", + "CD4-positive, alpha-beta T cell | \n", + "
| 111535086 | \n", + "B cell | \n", + "naive B cell | \n", + "
| 131413815 | \n", + "macrophage | \n", + "CD1c-positive myeloid dendritic cell | \n", + "
| 117555252 | \n", + "erythrocyte | \n", + "erythrocyte | \n", + "
| 11817178 | \n", + "naive thymus-derived CD4-positive, alpha-beta ... | \n", + "B cell | \n", + "
| 18143362 | \n", + "naive B cell | \n", + "B cell | \n", + "
| 5169402 | \n", + "gamma-delta T cell | \n", + "mucosal invariant T cell | \n", + "
| 153626269 | \n", + "CD14-positive monocyte | \n", + "macrophage | \n", + "
| 29866064 | \n", + "epithelial cell | \n", + "keratinocyte | \n", + "
| 11195909 | \n", + "B cell | \n", + "B cell | \n", + "
| 114260517 | \n", + "inhibitory interneuron | \n", + "ciliated cell | \n", + "
| 69453897 | \n", + "pvalb GABAergic cortical interneuron | \n", + "pvalb GABAergic cortical interneuron | \n", + "
| 15150795 | \n", + "endothelial cell of vascular tree | \n", + "endothelial cell | \n", + "
| 21240438 | \n", + "neuron | \n", + "L2/3-6 intratelencephalic projecting glutamate... | \n", + "
| 74874817 | \n", + "monocyte | \n", + "non-classical monocyte | \n", + "
| 26685568 | \n", + "uterine smooth muscle cell | \n", + "pericyte | \n", + "
| 5232410 | \n", + "CD4-positive, alpha-beta memory T cell | \n", + "naive thymus-derived CD4-positive, alpha-beta ... | \n", + "
| 116146692 | \n", + "astrocyte | \n", + "astrocyte | \n", + "
| 40708447 | \n", + "melanocyte of skin | \n", + "epithelial cell | \n", + "
| 58764949 | \n", + "plasma cell | \n", + "plasma cell | \n", + "
| 45876734 | \n", + "natural killer cell | \n", + "effector memory CD8-positive, alpha-beta T cell | \n", + "
| 46236211 | \n", + "natural killer cell | \n", + "hematopoietic precursor cell | \n", + "
| 69450841 | \n", + "L2/3-6 intratelencephalic projecting glutamate... | \n", + "L2/3-6 intratelencephalic projecting glutamate... | \n", + "
| 91111304 | \n", + "Mueller cell | \n", + "Mueller cell | \n", + "
| 35275331 | \n", + "double negative thymocyte | \n", + "progenitor cell | \n", + "
| 169158064 | \n", + "macrophage | \n", + "macrophage | \n", + "
| 114003261 | \n", + "Purkinje cell | \n", + "ciliated cell | \n", + "
| 40938483 | \n", + "B cell | \n", + "neutrophil | \n", + "
| 5216909 | \n", + "memory B cell | \n", + "B cell | \n", + "
| 45357807 | \n", + "enterocyte | \n", + "professional antigen presenting cell | \n", + "
| 82552174 | \n", + "naive thymus-derived CD4-positive, alpha-beta ... | \n", + "CD4-positive, alpha-beta T cell | \n", + "
| 3244891 | \n", + "neuron | \n", + "neuron | \n", + "
| 13567310 | \n", + "plasmablast | \n", + "B cell | \n", + "
| 66535832 | \n", + "lamp5 GABAergic cortical interneuron | \n", + "lamp5 GABAergic cortical interneuron | \n", + "
| \n", + " | prefix | \n", + "val_adata_id | \n", + "cell_type_top_1_accuracy | \n", + "cell_type_top_3_accuracy | \n", + "cell_type_top_5_accuracy | \n", + "cell_type_top_10_accuracy | \n", + "cell_type_loss | \n", + "disease_top_1_accuracy | \n", + "disease_top_3_accuracy | \n", + "disease_top_5_accuracy | \n", + "... | \n", + "tissue_top_1_accuracy | \n", + "tissue_top_3_accuracy | \n", + "tissue_top_5_accuracy | \n", + "tissue_top_10_accuracy | \n", + "tissue_loss | \n", + "sex_top_1_accuracy | \n", + "sex_top_3_accuracy | \n", + "sex_top_5_accuracy | \n", + "sex_top_10_accuracy | \n", + "sex_loss | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "10M_001_bs1536 | \n", + "1 | \n", + "0.572816 | \n", + "0.601942 | \n", + "0.601942 | \n", + "0.604099 | \n", + "4.515924 | \n", + "1.0000 | \n", + "1.0000 | \n", + "1.0000 | \n", + "... | \n", + "0.000 | \n", + "0.0 | \n", + "0.0000 | \n", + "0.00400 | \n", + "12.074639 | \n", + "0.0155 | \n", + "1.0 | \n", + "1.0 | \n", + "1.0 | \n", + "2.470647 | \n", + "
| 1 | \n", + "10M_001_bs1536 | \n", + "2 | \n", + "0.445500 | \n", + "0.648500 | \n", + "0.779000 | \n", + "0.927000 | \n", + "2.346420 | \n", + "0.0000 | \n", + "0.0000 | \n", + "0.0000 | \n", + "... | \n", + "0.948 | \n", + "1.0 | \n", + "1.0000 | \n", + "1.00000 | \n", + "0.133987 | \n", + "0.5210 | \n", + "1.0 | \n", + "1.0 | \n", + "1.0 | \n", + "0.831287 | \n", + "
| 2 | \n", + "10M_001_bs1536 | \n", + "3 | \n", + "0.402500 | \n", + "0.735500 | \n", + "0.846500 | \n", + "0.943500 | \n", + "2.351372 | \n", + "0.0000 | \n", + "0.0000 | \n", + "0.0000 | \n", + "... | \n", + "1.000 | \n", + "1.0 | \n", + "1.0000 | \n", + "1.00000 | \n", + "0.005723 | \n", + "0.8125 | \n", + "1.0 | \n", + "1.0 | \n", + "1.0 | \n", + "0.375574 | \n", + "
| 3 | \n", + "10M_001_bs1536 | \n", + "4 | \n", + "0.284309 | \n", + "0.560331 | \n", + "0.673744 | \n", + "0.872087 | \n", + "3.844428 | \n", + "0.0000 | \n", + "0.0000 | \n", + "0.0000 | \n", + "... | \n", + "0.000 | \n", + "0.0 | \n", + "0.0005 | \n", + "0.02400 | \n", + "15.572955 | \n", + "0.4915 | \n", + "1.0 | \n", + "1.0 | \n", + "1.0 | \n", + "0.979578 | \n", + "
| 4 | \n", + "10M_001_bs1536 | \n", + "5 | \n", + "0.446500 | \n", + "0.704500 | \n", + "0.827500 | \n", + "0.914500 | \n", + "2.332905 | \n", + "0.0000 | \n", + "0.0000 | \n", + "0.0000 | \n", + "... | \n", + "0.999 | \n", + "1.0 | \n", + "1.0000 | \n", + "1.00000 | \n", + "0.008097 | \n", + "0.8940 | \n", + "1.0 | \n", + "1.0 | \n", + "1.0 | \n", + "0.250716 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "
| 435 | \n", + "59M_001_bs3072 | \n", + "106 | \n", + "0.540000 | \n", + "0.601000 | \n", + "0.629000 | \n", + "0.820500 | \n", + "2.369624 | \n", + "0.1860 | \n", + "0.6285 | \n", + "0.9360 | \n", + "... | \n", + "0.000 | \n", + "0.0 | \n", + "0.0000 | \n", + "0.00000 | \n", + "7.946870 | \n", + "0.1955 | \n", + "1.0 | \n", + "1.0 | \n", + "1.0 | \n", + "1.420597 | \n", + "
| 436 | \n", + "59M_001_bs3072 | \n", + "107 | \n", + "0.521739 | \n", + "0.751976 | \n", + "0.892292 | \n", + "0.976285 | \n", + "0.968736 | \n", + "0.5590 | \n", + "0.9470 | \n", + "0.9960 | \n", + "... | \n", + "0.987 | \n", + "1.0 | \n", + "1.0000 | \n", + "1.00000 | \n", + "0.236766 | \n", + "0.8265 | \n", + "1.0 | \n", + "1.0 | \n", + "1.0 | \n", + "0.414492 | \n", + "
| 437 | \n", + "59M_001_bs3072 | \n", + "108 | \n", + "0.430082 | \n", + "0.679201 | \n", + "0.809636 | \n", + "0.968273 | \n", + "0.964056 | \n", + "0.7205 | \n", + "0.9600 | \n", + "0.9960 | \n", + "... | \n", + "0.977 | \n", + "1.0 | \n", + "1.0000 | \n", + "1.00000 | \n", + "0.239326 | \n", + "0.2675 | \n", + "1.0 | \n", + "1.0 | \n", + "1.0 | \n", + "0.931553 | \n", + "
| 438 | \n", + "59M_001_bs3072 | \n", + "109 | \n", + "0.004096 | \n", + "0.267408 | \n", + "0.393212 | \n", + "0.558806 | \n", + "4.707023 | \n", + "1.0000 | \n", + "1.0000 | \n", + "1.0000 | \n", + "... | \n", + "0.000 | \n", + "0.0 | \n", + "0.0000 | \n", + "0.00117 | \n", + "4.996072 | \n", + "0.9567 | \n", + "1.0 | \n", + "1.0 | \n", + "1.0 | \n", + "0.092742 | \n", + "
| 439 | \n", + "59M_001_bs3072 | \n", + "110 | \n", + "0.060500 | \n", + "0.115000 | \n", + "0.203000 | \n", + "0.332000 | \n", + "4.536273 | \n", + "0.0000 | \n", + "0.8510 | \n", + "0.9615 | \n", + "... | \n", + "0.000 | \n", + "0.0 | \n", + "0.0000 | \n", + "0.00000 | \n", + "6.168434 | \n", + "0.4625 | \n", + "1.0 | \n", + "1.0 | \n", + "1.0 | \n", + "0.795020 | \n", + "
440 rows × 27 columns
\n", + "| \n", + " | cell_type | \n", + "cell_type_pred | \n", + "tissue | \n", + "tissue_pred | \n", + "development_stage | \n", + "development_stage_pred | \n", + "disease | \n", + "disease_pred | \n", + "sex | \n", + "sex_pred | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|
| 31589848 | \n", + "oligodendrocyte | \n", + "oligodendrocyte | \n", + "dentate nucleus | \n", + "temporal lobe | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "male | \n", + "
| 31594264 | \n", + "oligodendrocyte | \n", + "oligodendrocyte | \n", + "dentate nucleus | \n", + "cerebellum | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "female | \n", + "
| 31601455 | \n", + "unknown | \n", + "stratified epithelial cell | \n", + "dentate nucleus | \n", + "cerebellum | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "female | \n", + "
| 31589769 | \n", + "oligodendrocyte | \n", + "oligodendrocyte | \n", + "dentate nucleus | \n", + "temporal lobe | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "male | \n", + "
| 31593942 | \n", + "unknown | \n", + "neuron | \n", + "dentate nucleus | \n", + "cerebellum | \n", + "52-year-old human stage | \n", + "23-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "female | \n", + "
| 31598517 | \n", + "cerebellar granule cell | \n", + "epithelial cell | \n", + "dentate nucleus | \n", + "cerebellum | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "male | \n", + "
| 31599161 | \n", + "cerebellar granule cell | \n", + "stratified epithelial cell | \n", + "dentate nucleus | \n", + "cerebellum | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "female | \n", + "
| 31601198 | \n", + "cerebellar granule cell | \n", + "neuron | \n", + "dentate nucleus | \n", + "cerebellum | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "female | \n", + "
| 31599402 | \n", + "cerebellar granule cell | \n", + "stratified epithelial cell | \n", + "dentate nucleus | \n", + "cerebellum | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "male | \n", + "
| 31594186 | \n", + "microglial cell | \n", + "macrophage | \n", + "dentate nucleus | \n", + "temporal lobe | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "male | \n", + "
| 31590646 | \n", + "oligodendrocyte | \n", + "oligodendrocyte | \n", + "dentate nucleus | \n", + "temporal lobe | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "male | \n", + "
| 31600383 | \n", + "cerebellar granule cell | \n", + "stratified epithelial cell | \n", + "dentate nucleus | \n", + "cerebellum | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "male | \n", + "
| 31592385 | \n", + "oligodendrocyte | \n", + "oligodendrocyte | \n", + "dentate nucleus | \n", + "temporal lobe | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "female | \n", + "
| 31588945 | \n", + "oligodendrocyte | \n", + "oligodendrocyte | \n", + "dentate nucleus | \n", + "temporal lobe | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "male | \n", + "
| 31590959 | \n", + "oligodendrocyte | \n", + "oligodendrocyte | \n", + "dentate nucleus | \n", + "temporal lobe | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "female | \n", + "
| 31592015 | \n", + "oligodendrocyte | \n", + "oligodendrocyte | \n", + "dentate nucleus | \n", + "temporal lobe | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "female | \n", + "
| 31588921 | \n", + "oligodendrocyte | \n", + "oligodendrocyte | \n", + "dentate nucleus | \n", + "temporal lobe | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "female | \n", + "
| 31592421 | \n", + "oligodendrocyte | \n", + "oligodendrocyte | \n", + "dentate nucleus | \n", + "temporal lobe | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "female | \n", + "
| 31592116 | \n", + "unknown | \n", + "stratified epithelial cell | \n", + "dentate nucleus | \n", + "cerebellum | \n", + "52-year-old human stage | \n", + "17th week post-fertilization stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "male | \n", + "
| 31591598 | \n", + "oligodendrocyte | \n", + "oligodendrocyte | \n", + "dentate nucleus | \n", + "temporal lobe | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "female | \n", + "
| 31588345 | \n", + "oligodendrocyte | \n", + "oligodendrocyte | \n", + "dentate nucleus | \n", + "temporal lobe | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "male | \n", + "
| 31593570 | \n", + "Bergmann glial cell | \n", + "astrocyte | \n", + "dentate nucleus | \n", + "cerebellum | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "male | \n", + "
| 31600178 | \n", + "cerebellar granule cell | \n", + "stratified epithelial cell | \n", + "dentate nucleus | \n", + "cerebellum | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "male | \n", + "
| 31599815 | \n", + "cerebellar granule cell | \n", + "stratified epithelial cell | \n", + "dentate nucleus | \n", + "cerebellum | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "female | \n", + "
| 31598814 | \n", + "cerebellar granule cell | \n", + "stratified epithelial cell | \n", + "dentate nucleus | \n", + "cerebellum | \n", + "52-year-old human stage | \n", + "17th week post-fertilization stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "male | \n", + "
| 31593104 | \n", + "oligodendrocyte | \n", + "oligodendrocyte | \n", + "dentate nucleus | \n", + "temporal lobe | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "female | \n", + "
| 31600997 | \n", + "cerebellar granule cell | \n", + "stratified epithelial cell | \n", + "dentate nucleus | \n", + "cerebellum | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "male | \n", + "
| 31598473 | \n", + "interneuron | \n", + "epithelial cell | \n", + "dentate nucleus | \n", + "cerebellum | \n", + "52-year-old human stage | \n", + "12th week post-fertilization stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "male | \n", + "
| 31600098 | \n", + "differentiation-committed oligodendrocyte prec... | \n", + "oligodendrocyte precursor cell | \n", + "dentate nucleus | \n", + "cerebellum | \n", + "52-year-old human stage | \n", + "12th week post-fertilization stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "male | \n", + "
| 31599509 | \n", + "cerebellar granule cell | \n", + "stratified epithelial cell | \n", + "dentate nucleus | \n", + "cerebellum | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "male | \n", + "
| 31598433 | \n", + "interneuron | \n", + "endothelial cell | \n", + "dentate nucleus | \n", + "cerebellum | \n", + "52-year-old human stage | \n", + "12th week post-fertilization stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "male | \n", + "
| 31599851 | \n", + "cerebellar granule cell | \n", + "stratified epithelial cell | \n", + "dentate nucleus | \n", + "cerebellum | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "male | \n", + "
| 31593301 | \n", + "oligodendrocyte | \n", + "oligodendrocyte | \n", + "dentate nucleus | \n", + "cerebellum | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "female | \n", + "
| 31600830 | \n", + "cerebellar granule cell | \n", + "monocyte-derived dendritic cell | \n", + "dentate nucleus | \n", + "cerebellum | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "male | \n", + "
| 31589187 | \n", + "oligodendrocyte | \n", + "oligodendrocyte | \n", + "dentate nucleus | \n", + "temporal lobe | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "female | \n", + "
| 31600725 | \n", + "cerebellar granule cell | \n", + "stratified epithelial cell | \n", + "dentate nucleus | \n", + "cerebellum | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "male | \n", + "
| 31588821 | \n", + "oligodendrocyte | \n", + "oligodendrocyte | \n", + "dentate nucleus | \n", + "temporal lobe | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "female | \n", + "
| 31591031 | \n", + "oligodendrocyte | \n", + "oligodendrocyte | \n", + "dentate nucleus | \n", + "temporal lobe | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "male | \n", + "
| 31599410 | \n", + "cerebellar granule cell | \n", + "stratified epithelial cell | \n", + "dentate nucleus | \n", + "cerebellum | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "male | \n", + "
| 31591972 | \n", + "oligodendrocyte | \n", + "oligodendrocyte | \n", + "dentate nucleus | \n", + "temporal lobe | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "female | \n", + "
| 31593634 | \n", + "differentiation-committed oligodendrocyte prec... | \n", + "oligodendrocyte precursor cell | \n", + "dentate nucleus | \n", + "cerebellum | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "male | \n", + "
| 31601467 | \n", + "macroglial cell | \n", + "astrocyte | \n", + "dentate nucleus | \n", + "cerebellum | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "male | \n", + "
| 31601214 | \n", + "cerebellar granule cell | \n", + "stratified epithelial cell | \n", + "dentate nucleus | \n", + "cerebellum | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "male | \n", + "
| 31589523 | \n", + "unknown | \n", + "stratified epithelial cell | \n", + "dentate nucleus | \n", + "cerebellum | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "male | \n", + "
| 31589177 | \n", + "unknown | \n", + "neuron | \n", + "dentate nucleus | \n", + "cerebellum | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "male | \n", + "
| 31601204 | \n", + "cerebellar granule cell | \n", + "GABAergic neuron | \n", + "dentate nucleus | \n", + "cerebellum | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "male | \n", + "
| 31590685 | \n", + "oligodendrocyte | \n", + "oligodendrocyte | \n", + "dentate nucleus | \n", + "temporal lobe | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "female | \n", + "
| 31589072 | \n", + "oligodendrocyte | \n", + "oligodendrocyte | \n", + "dentate nucleus | \n", + "temporal lobe | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "female | \n", + "
| 31593664 | \n", + "oligodendrocyte | \n", + "oligodendrocyte | \n", + "dentate nucleus | \n", + "cerebellum | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "female | \n", + "
| 31590994 | \n", + "oligodendrocyte | \n", + "oligodendrocyte | \n", + "dentate nucleus | \n", + "temporal lobe | \n", + "52-year-old human stage | \n", + "61-year-old stage | \n", + "normal | \n", + "normal | \n", + "male | \n", + "female | \n", + "
| \n", + " | cell_type | \n", + "train_donor_dataset_count | \n", + "train_cell_count | \n", + "
|---|---|---|---|
| 0 | \n", + "neuron | \n", + "526 | \n", + "2987969 | \n", + "
| 1 | \n", + "L2/3-6 intratelencephalic projecting glutamate... | \n", + "200 | \n", + "1695623 | \n", + "
| 2 | \n", + "glutamatergic neuron | \n", + "89 | \n", + "1604668 | \n", + "
| 3 | \n", + "oligodendrocyte | \n", + "904 | \n", + "1394984 | \n", + "
| 4 | \n", + "CD4-positive, alpha-beta T cell | \n", + "2598 | \n", + "1368136 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "... | \n", + "
| 673 | \n", + "serous cell of epithelium of bronchus | \n", + "2 | \n", + "15 | \n", + "
| 674 | \n", + "sperm | \n", + "1 | \n", + "11 | \n", + "
| 675 | \n", + "myelinating Schwann cell | \n", + "5 | \n", + "11 | \n", + "
| 676 | \n", + "type N enteroendocrine cell | \n", + "7 | \n", + "10 | \n", + "
| 677 | \n", + "pancreatic endocrine cell | \n", + "4 | \n", + "8 | \n", + "
677 rows × 3 columns
\n", + "| \n", + " | cell_type | \n", + "train_donor_dataset_count | \n", + "train_cell_count | \n", + "train_cell_fraction | \n", + "
|---|---|---|---|---|
| 0 | \n", + "neuron | \n", + "526 | \n", + "2987969 | \n", + "0.069352 | \n", + "
| 1 | \n", + "L2/3-6 intratelencephalic projecting glutamate... | \n", + "200 | \n", + "1695623 | \n", + "0.039356 | \n", + "
| 2 | \n", + "glutamatergic neuron | \n", + "89 | \n", + "1604668 | \n", + "0.037245 | \n", + "
| 3 | \n", + "oligodendrocyte | \n", + "904 | \n", + "1394984 | \n", + "0.032378 | \n", + "
| 4 | \n", + "CD4-positive, alpha-beta T cell | \n", + "2598 | \n", + "1368136 | \n", + "0.031755 | \n", + "
| 6 | \n", + "CD8-positive, alpha-beta T cell | \n", + "2415 | \n", + "1284243 | \n", + "0.029808 | \n", + "
| 7 | \n", + "classical monocyte | \n", + "1472 | \n", + "1059249 | \n", + "0.024586 | \n", + "
| 8 | \n", + "B cell | \n", + "2802 | \n", + "1007780 | \n", + "0.023391 | \n", + "
| 9 | \n", + "natural killer cell | \n", + "3868 | \n", + "930635 | \n", + "0.021600 | \n", + "
| 10 | \n", + "fibroblast | \n", + "1088 | \n", + "858760 | \n", + "0.019932 | \n", + "
| 11 | \n", + "macrophage | \n", + "1678 | \n", + "840392 | \n", + "0.019506 | \n", + "
| 12 | \n", + "naive thymus-derived CD4-positive, alpha-beta ... | \n", + "2012 | \n", + "720928 | \n", + "0.016733 | \n", + "
| 13 | \n", + "astrocyte | \n", + "628 | \n", + "711425 | \n", + "0.016512 | \n", + "
| 14 | \n", + "central memory CD4-positive, alpha-beta T cell | \n", + "1668 | \n", + "701971 | \n", + "0.016293 | \n", + "
| 15 | \n", + "retinal rod cell | \n", + "60 | \n", + "688136 | \n", + "0.015972 | \n", + "
| 16 | \n", + "malignant cell | \n", + "433 | \n", + "604373 | \n", + "0.014028 | \n", + "
| 17 | \n", + "CD14-positive monocyte | \n", + "1686 | \n", + "580910 | \n", + "0.013483 | \n", + "
| 18 | \n", + "neural cell | \n", + "237 | \n", + "554286 | \n", + "0.012865 | \n", + "
| 19 | \n", + "stromal cell | \n", + "293 | \n", + "446031 | \n", + "0.010353 | \n", + "
| 20 | \n", + "endothelial cell | \n", + "1339 | \n", + "435022 | \n", + "0.010097 | \n", + "
| \n", + " | prefix | \n", + "val_adata_id | \n", + "metadata_predictions_type | \n", + "labels | \n", + "names | \n", + "pred_labels | \n", + "pred_names | \n", + "loss | \n", + "top_1_call | \n", + "top_1_score | \n", + "top_3_call | \n", + "top_3_score | \n", + "top_5_call | \n", + "top_5_score | \n", + "top_10_call | \n", + "top_10_score | \n", + "hop_0_call | \n", + "hop_1_call | \n", + "hop_2_call | \n", + "hop_3_call | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "10M_001_bs1536 | \n", + "1 | \n", + "rand_wo_XY | \n", + "oligodendrocyte | \n", + "CL:0000128 | \n", + "oligodendrocyte | \n", + "CL:0000128 | \n", + "-0.000004 | \n", + "1 | \n", + "0.999996 | \n", + "1 | \n", + "1.000000 | \n", + "1 | \n", + "1.000001 | \n", + "1 | \n", + "1.000001 | \n", + "1.0 | \n", + "1.0 | \n", + "1.0 | \n", + "1.0 | \n", + "
| 1 | \n", + "10M_001_bs1536 | \n", + "1 | \n", + "rand_wo_XY | \n", + "oligodendrocyte | \n", + "CL:0000128 | \n", + "oligodendrocyte | \n", + "CL:0000128 | \n", + "0.000000 | \n", + "1 | \n", + "1.000000 | \n", + "1 | \n", + "1.000000 | \n", + "1 | \n", + "1.000000 | \n", + "1 | \n", + "1.000000 | \n", + "1.0 | \n", + "1.0 | \n", + "1.0 | \n", + "1.0 | \n", + "
| 2 | \n", + "10M_001_bs1536 | \n", + "1 | \n", + "rand_wo_XY | \n", + "oligodendrocyte | \n", + "CL:0000128 | \n", + "oligodendrocyte | \n", + "CL:0000128 | \n", + "-0.000004 | \n", + "1 | \n", + "0.999996 | \n", + "1 | \n", + "1.000001 | \n", + "1 | \n", + "1.000001 | \n", + "1 | \n", + "1.000001 | \n", + "1.0 | \n", + "1.0 | \n", + "1.0 | \n", + "1.0 | \n", + "
| 3 | \n", + "10M_001_bs1536 | \n", + "1 | \n", + "rand_wo_XY | \n", + "cerebellar granule cell | \n", + "CL:0001031 | \n", + "neuron | \n", + "CL:0000540 | \n", + "-14.139661 | \n", + "0 | \n", + "0.016570 | \n", + "0 | \n", + "0.008422 | \n", + "0 | \n", + "0.002656 | \n", + "0 | \n", + "0.001219 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "1.0 | \n", + "
| 4 | \n", + "10M_001_bs1536 | \n", + "1 | \n", + "rand_wo_XY | \n", + "cerebellar granule cell | \n", + "CL:0001031 | \n", + "neuron | \n", + "CL:0000540 | \n", + "-13.637383 | \n", + "0 | \n", + "0.003287 | \n", + "0 | \n", + "0.001867 | \n", + "0 | \n", + "0.000937 | \n", + "0 | \n", + "0.000407 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "1.0 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "
| 774127 | \n", + "59M_001_bs3072 | \n", + "110 | \n", + "rand_wo_XY | \n", + "malignant cell | \n", + "CL:0001064 | \n", + "epithelial cell | \n", + "CL:0000066 | \n", + "-4.945252 | \n", + "0 | \n", + "0.905921 | \n", + "0 | \n", + "0.864416 | \n", + "0 | \n", + "0.827490 | \n", + "0 | \n", + "0.757097 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "1.0 | \n", + "
| 774128 | \n", + "59M_001_bs3072 | \n", + "110 | \n", + "rand_wo_XY | \n", + "malignant cell | \n", + "CL:0001064 | \n", + "fibroblast | \n", + "CL:0000057 | \n", + "-4.796081 | \n", + "0 | \n", + "0.850299 | \n", + "0 | \n", + "0.718877 | \n", + "0 | \n", + "0.625284 | \n", + "0 | \n", + "0.500179 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "1.0 | \n", + "
| 774129 | \n", + "59M_001_bs3072 | \n", + "110 | \n", + "rand_wo_XY | \n", + "malignant cell | \n", + "CL:0001064 | \n", + "fibroblast | \n", + "CL:0000057 | \n", + "-4.748775 | \n", + "0 | \n", + "0.917811 | \n", + "0 | \n", + "0.807339 | \n", + "0 | \n", + "0.749288 | \n", + "0 | \n", + "0.637268 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "1.0 | \n", + "
| 774130 | \n", + "59M_001_bs3072 | \n", + "110 | \n", + "rand_wo_XY | \n", + "malignant cell | \n", + "CL:0001064 | \n", + "fibroblast | \n", + "CL:0000057 | \n", + "-5.884660 | \n", + "0 | \n", + "0.743033 | \n", + "0 | \n", + "0.550749 | \n", + "0 | \n", + "0.488111 | \n", + "0 | \n", + "0.401230 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "1.0 | \n", + "
| 774131 | \n", + "59M_001_bs3072 | \n", + "110 | \n", + "rand_wo_XY | \n", + "malignant cell | \n", + "CL:0001064 | \n", + "epithelial cell | \n", + "CL:0000066 | \n", + "-4.662181 | \n", + "0 | \n", + "0.909212 | \n", + "0 | \n", + "0.787991 | \n", + "0 | \n", + "0.719045 | \n", + "0 | \n", + "0.608887 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "1.0 | \n", + "
774132 rows × 20 columns
\n", + "| \n", + " | prefix | \n", + "val_adata_id | \n", + "metadata_predictions_type | \n", + "labels | \n", + "names | \n", + "pred_labels | \n", + "pred_names | \n", + "loss | \n", + "top_1_call | \n", + "top_1_score | \n", + "... | \n", + "top_10_call | \n", + "top_10_score | \n", + "hop_0_call | \n", + "hop_1_call | \n", + "hop_2_call | \n", + "hop_3_call | \n", + "cell_type | \n", + "train_donor_dataset_count | \n", + "train_cell_count | \n", + "train_cell_fraction | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "10M_001_bs1536 | \n", + "1 | \n", + "rand_wo_XY | \n", + "oligodendrocyte | \n", + "CL:0000128 | \n", + "oligodendrocyte | \n", + "CL:0000128 | \n", + "-0.000004 | \n", + "1 | \n", + "0.999996 | \n", + "... | \n", + "1 | \n", + "1.000001 | \n", + "1.0 | \n", + "1.0 | \n", + "1.0 | \n", + "1.0 | \n", + "oligodendrocyte | \n", + "904 | \n", + "1394984 | \n", + "0.032378 | \n", + "
| 1 | \n", + "10M_001_bs1536 | \n", + "1 | \n", + "rand_wo_XY | \n", + "oligodendrocyte | \n", + "CL:0000128 | \n", + "oligodendrocyte | \n", + "CL:0000128 | \n", + "0.000000 | \n", + "1 | \n", + "1.000000 | \n", + "... | \n", + "1 | \n", + "1.000000 | \n", + "1.0 | \n", + "1.0 | \n", + "1.0 | \n", + "1.0 | \n", + "oligodendrocyte | \n", + "904 | \n", + "1394984 | \n", + "0.032378 | \n", + "
| 2 | \n", + "10M_001_bs1536 | \n", + "1 | \n", + "rand_wo_XY | \n", + "oligodendrocyte | \n", + "CL:0000128 | \n", + "oligodendrocyte | \n", + "CL:0000128 | \n", + "-0.000004 | \n", + "1 | \n", + "0.999996 | \n", + "... | \n", + "1 | \n", + "1.000001 | \n", + "1.0 | \n", + "1.0 | \n", + "1.0 | \n", + "1.0 | \n", + "oligodendrocyte | \n", + "904 | \n", + "1394984 | \n", + "0.032378 | \n", + "
| 3 | \n", + "10M_001_bs1536 | \n", + "1 | \n", + "rand_wo_XY | \n", + "cerebellar granule cell | \n", + "CL:0001031 | \n", + "neuron | \n", + "CL:0000540 | \n", + "-14.139661 | \n", + "0 | \n", + "0.016570 | \n", + "... | \n", + "0 | \n", + "0.001219 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "1.0 | \n", + "cerebellar granule cell | \n", + "42 | \n", + "71069 | \n", + "0.001650 | \n", + "
| 4 | \n", + "10M_001_bs1536 | \n", + "1 | \n", + "rand_wo_XY | \n", + "cerebellar granule cell | \n", + "CL:0001031 | \n", + "neuron | \n", + "CL:0000540 | \n", + "-13.637383 | \n", + "0 | \n", + "0.003287 | \n", + "... | \n", + "0 | \n", + "0.000407 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "1.0 | \n", + "cerebellar granule cell | \n", + "42 | \n", + "71069 | \n", + "0.001650 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "
| 774127 | \n", + "59M_001_bs3072 | \n", + "110 | \n", + "rand_wo_XY | \n", + "malignant cell | \n", + "CL:0001064 | \n", + "epithelial cell | \n", + "CL:0000066 | \n", + "-4.945252 | \n", + "0 | \n", + "0.905921 | \n", + "... | \n", + "0 | \n", + "0.757097 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "1.0 | \n", + "malignant cell | \n", + "433 | \n", + "604373 | \n", + "0.014028 | \n", + "
| 774128 | \n", + "59M_001_bs3072 | \n", + "110 | \n", + "rand_wo_XY | \n", + "malignant cell | \n", + "CL:0001064 | \n", + "fibroblast | \n", + "CL:0000057 | \n", + "-4.796081 | \n", + "0 | \n", + "0.850299 | \n", + "... | \n", + "0 | \n", + "0.500179 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "1.0 | \n", + "malignant cell | \n", + "433 | \n", + "604373 | \n", + "0.014028 | \n", + "
| 774129 | \n", + "59M_001_bs3072 | \n", + "110 | \n", + "rand_wo_XY | \n", + "malignant cell | \n", + "CL:0001064 | \n", + "fibroblast | \n", + "CL:0000057 | \n", + "-4.748775 | \n", + "0 | \n", + "0.917811 | \n", + "... | \n", + "0 | \n", + "0.637268 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "1.0 | \n", + "malignant cell | \n", + "433 | \n", + "604373 | \n", + "0.014028 | \n", + "
| 774130 | \n", + "59M_001_bs3072 | \n", + "110 | \n", + "rand_wo_XY | \n", + "malignant cell | \n", + "CL:0001064 | \n", + "fibroblast | \n", + "CL:0000057 | \n", + "-5.884660 | \n", + "0 | \n", + "0.743033 | \n", + "... | \n", + "0 | \n", + "0.401230 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "1.0 | \n", + "malignant cell | \n", + "433 | \n", + "604373 | \n", + "0.014028 | \n", + "
| 774131 | \n", + "59M_001_bs3072 | \n", + "110 | \n", + "rand_wo_XY | \n", + "malignant cell | \n", + "CL:0001064 | \n", + "epithelial cell | \n", + "CL:0000066 | \n", + "-4.662181 | \n", + "0 | \n", + "0.909212 | \n", + "... | \n", + "0 | \n", + "0.608887 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "1.0 | \n", + "malignant cell | \n", + "433 | \n", + "604373 | \n", + "0.014028 | \n", + "
774132 rows × 24 columns
\n", + "| \n", + " | prefix | \n", + "i_threshold | \n", + "n_samples | \n", + "n_cell_types | \n", + "accuracy_25 | \n", + "accuracy_50 | \n", + "accuracy_75 | \n", + "accuracy_mean | \n", + "
|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "10M_001_bs1536 | \n", + "0 | \n", + "42842 | \n", + "153 | \n", + "0.000000 | \n", + "0.017514 | \n", + "0.544892 | \n", + "0.265912 | \n", + "
| 1 | \n", + "10M_001_bs1536 | \n", + "1 | \n", + "29353 | \n", + "42 | \n", + "0.476561 | \n", + "0.728350 | \n", + "0.896799 | \n", + "0.638329 | \n", + "
| 2 | \n", + "10M_001_bs1536 | \n", + "2 | \n", + "119213 | \n", + "39 | \n", + "0.752394 | \n", + "0.906061 | \n", + "0.958480 | \n", + "0.761904 | \n", + "
| 3 | \n", + "19M_001_bs2048 | \n", + "0 | \n", + "42842 | \n", + "153 | \n", + "0.000000 | \n", + "0.111111 | \n", + "0.625000 | \n", + "0.313966 | \n", + "
| 4 | \n", + "19M_001_bs2048 | \n", + "1 | \n", + "29353 | \n", + "42 | \n", + "0.504964 | \n", + "0.766840 | \n", + "0.889086 | \n", + "0.650790 | \n", + "
| 5 | \n", + "19M_001_bs2048 | \n", + "2 | \n", + "119213 | \n", + "39 | \n", + "0.683428 | \n", + "0.920472 | \n", + "0.976026 | \n", + "0.766641 | \n", + "
| 6 | \n", + "30M_001_bs2560 | \n", + "0 | \n", + "42842 | \n", + "153 | \n", + "0.000000 | \n", + "0.108387 | \n", + "0.629108 | \n", + "0.313386 | \n", + "
| 7 | \n", + "30M_001_bs2560 | \n", + "1 | \n", + "29353 | \n", + "42 | \n", + "0.359055 | \n", + "0.757175 | \n", + "0.907105 | \n", + "0.636023 | \n", + "
| 8 | \n", + "30M_001_bs2560 | \n", + "2 | \n", + "119213 | \n", + "39 | \n", + "0.724852 | \n", + "0.943387 | \n", + "0.970939 | \n", + "0.779285 | \n", + "
| 9 | \n", + "59M_001_bs3072 | \n", + "0 | \n", + "42842 | \n", + "153 | \n", + "0.000000 | \n", + "0.202203 | \n", + "0.684558 | \n", + "0.346133 | \n", + "
| 10 | \n", + "59M_001_bs3072 | \n", + "1 | \n", + "29353 | \n", + "42 | \n", + "0.494333 | \n", + "0.778615 | \n", + "0.899792 | \n", + "0.673899 | \n", + "
| 11 | \n", + "59M_001_bs3072 | \n", + "2 | \n", + "119213 | \n", + "39 | \n", + "0.785145 | \n", + "0.933298 | \n", + "0.981624 | \n", + "0.787782 | \n", + "
| \n", + " | val_adata_id | \n", + "accuracy | \n", + "
|---|---|---|
| 46 | \n", + "48 | \n", + "1.000000 | \n", + "
| 45 | \n", + "47 | \n", + "1.000000 | \n", + "
| 40 | \n", + "42 | \n", + "1.000000 | \n", + "
| 88 | \n", + "97 | \n", + "1.000000 | \n", + "
| 48 | \n", + "50 | \n", + "1.000000 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "
| 89 | \n", + "98 | \n", + "0.300050 | \n", + "
| 67 | \n", + "69 | \n", + "0.191801 | \n", + "
| 101 | \n", + "110 | \n", + "0.152578 | \n", + "
| 100 | \n", + "109 | \n", + "0.044177 | \n", + "
| 33 | \n", + "35 | \n", + "0.004642 | \n", + "
102 rows × 2 columns
\n", + "| \n", + " | prefix | \n", + "val_adata_id | \n", + "metadata_predictions_type | \n", + "labels | \n", + "names | \n", + "pred_labels | \n", + "pred_names | \n", + "loss | \n", + "top_1_call | \n", + "top_1_score | \n", + "... | \n", + "top_10_call | \n", + "top_10_score | \n", + "hop_0_call | \n", + "hop_1_call | \n", + "hop_2_call | \n", + "hop_3_call | \n", + "cell_type | \n", + "train_donor_dataset_count | \n", + "train_cell_count | \n", + "train_cell_fraction | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32578 | \n", + "10M_001_bs1536 | \n", + "23 | \n", + "rand_wo_XY | \n", + "vip GABAergic cortical interneuron | \n", + "CL:4023016 | \n", + "neuron | \n", + "CL:0000540 | \n", + "-25.930508 | \n", + "0 | \n", + "0.000938 | \n", + "... | \n", + "0 | \n", + "1.668930e-06 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "vip GABAergic cortical interneuron | \n", + "232 | \n", + "257900 | \n", + "0.005986 | \n", + "
| 33007 | \n", + "10M_001_bs1536 | \n", + "23 | \n", + "rand_wo_XY | \n", + "vip GABAergic cortical interneuron | \n", + "CL:4023016 | \n", + "neuron | \n", + "CL:0000540 | \n", + "-22.916759 | \n", + "0 | \n", + "0.000174 | \n", + "... | \n", + "0 | \n", + "6.556511e-07 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "vip GABAergic cortical interneuron | \n", + "232 | \n", + "257900 | \n", + "0.005986 | \n", + "
| 33267 | \n", + "10M_001_bs1536 | \n", + "23 | \n", + "rand_wo_XY | \n", + "vip GABAergic cortical interneuron | \n", + "CL:4023016 | \n", + "neuron | \n", + "CL:0000540 | \n", + "-11.456532 | \n", + "0 | \n", + "0.380691 | \n", + "... | \n", + "0 | \n", + "1.178980e-04 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "vip GABAergic cortical interneuron | \n", + "232 | \n", + "257900 | \n", + "0.005986 | \n", + "
| 33349 | \n", + "10M_001_bs1536 | \n", + "23 | \n", + "rand_wo_XY | \n", + "vip GABAergic cortical interneuron | \n", + "CL:4023016 | \n", + "neuron | \n", + "CL:0000540 | \n", + "-20.421757 | \n", + "0 | \n", + "0.011641 | \n", + "... | \n", + "0 | \n", + "1.728535e-06 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "vip GABAergic cortical interneuron | \n", + "232 | \n", + "257900 | \n", + "0.005986 | \n", + "
| 33350 | \n", + "10M_001_bs1536 | \n", + "23 | \n", + "rand_wo_XY | \n", + "vip GABAergic cortical interneuron | \n", + "CL:4023016 | \n", + "neuron | \n", + "CL:0000540 | \n", + "-19.790600 | \n", + "0 | \n", + "0.000942 | \n", + "... | \n", + "0 | \n", + "-8.344650e-07 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "vip GABAergic cortical interneuron | \n", + "232 | \n", + "257900 | \n", + "0.005986 | \n", + "
| 33529 | \n", + "10M_001_bs1536 | \n", + "23 | \n", + "rand_wo_XY | \n", + "vip GABAergic cortical interneuron | \n", + "CL:4023016 | \n", + "neuron | \n", + "CL:0000540 | \n", + "-16.851460 | \n", + "0 | \n", + "0.006490 | \n", + "... | \n", + "0 | \n", + "2.980232e-06 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "vip GABAergic cortical interneuron | \n", + "232 | \n", + "257900 | \n", + "0.005986 | \n", + "
| 33555 | \n", + "10M_001_bs1536 | \n", + "23 | \n", + "rand_wo_XY | \n", + "vip GABAergic cortical interneuron | \n", + "CL:4023016 | \n", + "astrocyte | \n", + "CL:0000127 | \n", + "-11.417817 | \n", + "0 | \n", + "0.501340 | \n", + "... | \n", + "0 | \n", + "3.779531e-04 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "vip GABAergic cortical interneuron | \n", + "232 | \n", + "257900 | \n", + "0.005986 | \n", + "
| 33686 | \n", + "10M_001_bs1536 | \n", + "23 | \n", + "rand_wo_XY | \n", + "vip GABAergic cortical interneuron | \n", + "CL:4023016 | \n", + "neuron | \n", + "CL:0000540 | \n", + "-9.786108 | \n", + "0 | \n", + "0.489706 | \n", + "... | \n", + "1 | \n", + "9.999686e-01 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "vip GABAergic cortical interneuron | \n", + "232 | \n", + "257900 | \n", + "0.005986 | \n", + "
| 33868 | \n", + "10M_001_bs1536 | \n", + "23 | \n", + "rand_wo_XY | \n", + "vip GABAergic cortical interneuron | \n", + "CL:4023016 | \n", + "neuron | \n", + "CL:0000540 | \n", + "-13.541454 | \n", + "0 | \n", + "0.275758 | \n", + "... | \n", + "0 | \n", + "1.382828e-05 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "vip GABAergic cortical interneuron | \n", + "232 | \n", + "257900 | \n", + "0.005986 | \n", + "
| 34372 | \n", + "10M_001_bs1536 | \n", + "23 | \n", + "rand_wo_XY | \n", + "vip GABAergic cortical interneuron | \n", + "CL:4023016 | \n", + "neuron | \n", + "CL:0000540 | \n", + "-20.893860 | \n", + "0 | \n", + "0.006530 | \n", + "... | \n", + "0 | \n", + "2.920628e-06 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "vip GABAergic cortical interneuron | \n", + "232 | \n", + "257900 | \n", + "0.005986 | \n", + "
10 rows × 24 columns
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|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "10M_001_bs1536 | \n", + "1 | \n", + "rand_wo_XY | \n", + "male | \n", + "PATO:0000384 | \n", + "oligodendrocyte | \n", + "0 | \n", + "-0.090517 | \n", + "
| 1 | \n", + "10M_001_bs1536 | \n", + "1 | \n", + "rand_wo_XY | \n", + "male | \n", + "PATO:0000384 | \n", + "oligodendrocyte | \n", + "0 | \n", + "-0.160276 | \n", + "
| 2 | \n", + "10M_001_bs1536 | \n", + "1 | \n", + "rand_wo_XY | \n", + "male | \n", + "PATO:0000384 | \n", + "unknown | \n", + "0 | \n", + "-0.226952 | \n", + "
| 3 | \n", + "10M_001_bs1536 | \n", + "1 | \n", + "rand_wo_XY | \n", + "male | \n", + "PATO:0000384 | \n", + "oligodendrocyte | \n", + "0 | \n", + "-0.069796 | \n", + "
| 4 | \n", + "10M_001_bs1536 | \n", + "1 | \n", + "rand_wo_XY | \n", + "male | \n", + "PATO:0000384 | \n", + "unknown | \n", + "0 | \n", + "-0.051056 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "
| 2364607 | \n", + "59M_001_bs3072 | \n", + "110 | \n", + "rand_w_X | \n", + "male | \n", + "PATO:0000384 | \n", + "malignant cell | \n", + "0 | \n", + "-0.816644 | \n", + "
| 2364608 | \n", + "59M_001_bs3072 | \n", + "110 | \n", + "rand_w_X | \n", + "male | \n", + "PATO:0000384 | \n", + "malignant cell | \n", + "0 | \n", + "-0.440763 | \n", + "
| 2364609 | \n", + "59M_001_bs3072 | \n", + "110 | \n", + "rand_w_X | \n", + "male | \n", + "PATO:0000384 | \n", + "malignant cell | \n", + "0 | \n", + "-0.397794 | \n", + "
| 2364610 | \n", + "59M_001_bs3072 | \n", + "110 | \n", + "rand_w_X | \n", + "male | \n", + "PATO:0000384 | \n", + "malignant cell | \n", + "0 | \n", + "-0.238744 | \n", + "
| 2364611 | \n", + "59M_001_bs3072 | \n", + "110 | \n", + "rand_w_X | \n", + "male | \n", + "PATO:0000384 | \n", + "malignant cell | \n", + "0 | \n", + "-0.329061 | \n", + "
2364612 rows × 8 columns
\n", + "| \n", + " | prefix | \n", + "val_adata_id | \n", + "metadata_predictions_type | \n", + "labels | \n", + "names | \n", + "cell_type | \n", + "label_codes | \n", + "scores | \n", + "train_donor_dataset_count | \n", + "train_cell_count | \n", + "train_cell_fraction | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "10M_001_bs1536 | \n", + "1 | \n", + "rand_wo_XY | \n", + "male | \n", + "PATO:0000384 | \n", + "oligodendrocyte | \n", + "0 | \n", + "-0.090517 | \n", + "904.0 | \n", + "1394984.0 | \n", + "0.032378 | \n", + "
| 1 | \n", + "10M_001_bs1536 | \n", + "1 | \n", + "rand_wo_XY | \n", + "male | \n", + "PATO:0000384 | \n", + "oligodendrocyte | \n", + "0 | \n", + "-0.160276 | \n", + "904.0 | \n", + "1394984.0 | \n", + "0.032378 | \n", + "
| 3 | \n", + "10M_001_bs1536 | \n", + "1 | \n", + "rand_wo_XY | \n", + "male | \n", + "PATO:0000384 | \n", + "oligodendrocyte | \n", + "0 | \n", + "-0.069796 | \n", + "904.0 | \n", + "1394984.0 | \n", + "0.032378 | \n", + "
| 5 | \n", + "10M_001_bs1536 | \n", + "1 | \n", + "rand_wo_XY | \n", + "male | \n", + "PATO:0000384 | \n", + "cerebellar granule cell | \n", + "0 | \n", + "-0.104820 | \n", + "42.0 | \n", + "71069.0 | \n", + "0.001650 | \n", + "
| 6 | \n", + "10M_001_bs1536 | \n", + "1 | \n", + "rand_wo_XY | \n", + "male | \n", + "PATO:0000384 | \n", + "cerebellar granule cell | \n", + "0 | \n", + "-0.154926 | \n", + "42.0 | \n", + "71069.0 | \n", + "0.001650 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "
| 2364607 | \n", + "59M_001_bs3072 | \n", + "110 | \n", + "rand_w_X | \n", + "male | \n", + "PATO:0000384 | \n", + "malignant cell | \n", + "0 | \n", + "-0.816644 | \n", + "433.0 | \n", + "604373.0 | \n", + "0.014028 | \n", + "
| 2364608 | \n", + "59M_001_bs3072 | \n", + "110 | \n", + "rand_w_X | \n", + "male | \n", + "PATO:0000384 | \n", + "malignant cell | \n", + "0 | \n", + "-0.440763 | \n", + "433.0 | \n", + "604373.0 | \n", + "0.014028 | \n", + "
| 2364609 | \n", + "59M_001_bs3072 | \n", + "110 | \n", + "rand_w_X | \n", + "male | \n", + "PATO:0000384 | \n", + "malignant cell | \n", + "0 | \n", + "-0.397794 | \n", + "433.0 | \n", + "604373.0 | \n", + "0.014028 | \n", + "
| 2364610 | \n", + "59M_001_bs3072 | \n", + "110 | \n", + "rand_w_X | \n", + "male | \n", + "PATO:0000384 | \n", + "malignant cell | \n", + "0 | \n", + "-0.238744 | \n", + "433.0 | \n", + "604373.0 | \n", + "0.014028 | \n", + "
| 2364611 | \n", + "59M_001_bs3072 | \n", + "110 | \n", + "rand_w_X | \n", + "male | \n", + "PATO:0000384 | \n", + "malignant cell | \n", + "0 | \n", + "-0.329061 | \n", + "433.0 | \n", + "604373.0 | \n", + "0.014028 | \n", + "
2322396 rows × 11 columns
\n", + "| \n", + " | prefix | \n", + "metadata_predictions_type | \n", + "n_cell_types | \n", + "auc_25 | \n", + "auc_50 | \n", + "auc_75 | \n", + "
|---|---|---|---|---|---|---|
| 0 | \n", + "10M_001_bs1536 | \n", + "rand_wo_XY | \n", + "243 | \n", + "0.255901 | \n", + "0.417649 | \n", + "0.578366 | \n", + "
| 1 | \n", + "10M_001_bs1536 | \n", + "rand_w_XY | \n", + "243 | \n", + "0.523314 | \n", + "0.747785 | \n", + "0.927046 | \n", + "
| 2 | \n", + "10M_001_bs1536 | \n", + "rand_w_X | \n", + "243 | \n", + "0.480549 | \n", + "0.667245 | \n", + "0.884572 | \n", + "
| 3 | \n", + "19M_001_bs2048 | \n", + "rand_wo_XY | \n", + "243 | \n", + "0.202764 | \n", + "0.433269 | \n", + "0.620811 | \n", + "
| 4 | \n", + "19M_001_bs2048 | \n", + "rand_w_XY | \n", + "243 | \n", + "0.817523 | \n", + "0.918605 | \n", + "0.981203 | \n", + "
| 5 | \n", + "19M_001_bs2048 | \n", + "rand_w_X | \n", + "243 | \n", + "0.400776 | \n", + "0.658629 | \n", + "0.875414 | \n", + "
| 6 | \n", + "30M_001_bs2560 | \n", + "rand_wo_XY | \n", + "243 | \n", + "0.302126 | \n", + "0.461800 | \n", + "0.636455 | \n", + "
| 7 | \n", + "30M_001_bs2560 | \n", + "rand_w_XY | \n", + "243 | \n", + "0.869489 | \n", + "0.959909 | \n", + "0.996988 | \n", + "
| 8 | \n", + "30M_001_bs2560 | \n", + "rand_w_X | \n", + "243 | \n", + "0.555919 | \n", + "0.778308 | \n", + "0.931818 | \n", + "
| 9 | \n", + "59M_001_bs3072 | \n", + "rand_wo_XY | \n", + "243 | \n", + "0.301981 | \n", + "0.438782 | \n", + "0.617952 | \n", + "
| 10 | \n", + "59M_001_bs3072 | \n", + "rand_w_XY | \n", + "243 | \n", + "0.862533 | \n", + "0.955231 | \n", + "0.995524 | \n", + "
| 11 | \n", + "59M_001_bs3072 | \n", + "rand_w_X | \n", + "243 | \n", + "0.536373 | \n", + "0.791613 | \n", + "0.964531 | \n", + "
| \n", + " | cell_type | \n", + "auc | \n", + "
|---|---|---|
| 69 | \n", + "interneuron | \n", + "0.999280 | \n", + "
| 103 | \n", + "neural cell | \n", + "0.986866 | \n", + "
| 89 | \n", + "mesenchymal cell | \n", + "0.947691 | \n", + "
| 53 | \n", + "enterocyte | \n", + "0.941811 | \n", + "
| 22 | \n", + "alternatively activated macrophage | \n", + "0.933333 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "
| 106 | \n", + "neutrophil | \n", + "0.000000 | \n", + "
| 28 | \n", + "capillary endothelial cell | \n", + "0.000000 | \n", + "
| 17 | \n", + "Schwann cell | \n", + "0.000000 | \n", + "
| 116 | \n", + "pulmonary artery endothelial cell | \n", + "0.000000 | \n", + "
| 131 | \n", + "vein endothelial cell | \n", + "0.000000 | \n", + "
133 rows × 2 columns
\n", + "| \n", + " | cell_type | \n", + "auc | \n", + "
|---|---|---|
| 20 | \n", + "adipocyte of epicardial fat of left ventricle | \n", + "1.000000 | \n", + "
| 16 | \n", + "M cell of gut | \n", + "1.000000 | \n", + "
| 54 | \n", + "enteroendocrine cell | \n", + "1.000000 | \n", + "
| 37 | \n", + "chandelier pvalb GABAergic cortical interneuron | \n", + "1.000000 | \n", + "
| 102 | \n", + "near-projecting glutamatergic cortical neuron | \n", + "1.000000 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "
| 57 | \n", + "epithelial cell of lung | \n", + "0.043528 | \n", + "
| 131 | \n", + "vein endothelial cell | \n", + "0.002664 | \n", + "
| 28 | \n", + "capillary endothelial cell | \n", + "0.000138 | \n", + "
| 106 | \n", + "neutrophil | \n", + "0.000000 | \n", + "
| 116 | \n", + "pulmonary artery endothelial cell | \n", + "0.000000 | \n", + "
133 rows × 2 columns
\n", + "| \n", + " | cell_type | \n", + "auc | \n", + "
|---|---|---|
| 69 | \n", + "interneuron | \n", + "1.000000 | \n", + "
| 71 | \n", + "intestine goblet cell | \n", + "1.000000 | \n", + "
| 14 | \n", + "L5 extratelencephalic projecting glutamatergic... | \n", + "1.000000 | \n", + "
| 15 | \n", + "L6b glutamatergic cortical neuron | \n", + "1.000000 | \n", + "
| 16 | \n", + "M cell of gut | \n", + "1.000000 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "
| 131 | \n", + "vein endothelial cell | \n", + "0.205567 | \n", + "
| 121 | \n", + "smooth muscle cell | \n", + "0.183007 | \n", + "
| 27 | \n", + "bronchus fibroblast of lung | \n", + "0.173010 | \n", + "
| 28 | \n", + "capillary endothelial cell | \n", + "0.128099 | \n", + "
| 116 | \n", + "pulmonary artery endothelial cell | \n", + "0.078947 | \n", + "
133 rows × 2 columns
\n", + "| \n", + " | prefix | \n", + "metadata_predictions_type | \n", + "coarse_tissue | \n", + "n_cell_types | \n", + "auc_25 | \n", + "auc_50 | \n", + "auc_75 | \n", + "auc_mean | \n", + "
|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "10M_001_bs1536 | \n", + "rand_w_XY | \n", + "brain | \n", + "47 | \n", + "0.479248 | \n", + "0.619689 | \n", + "0.724061 | \n", + "0.625101 | \n", + "
| 1 | \n", + "10M_001_bs1536 | \n", + "rand_w_XY | \n", + "heart | \n", + "20 | \n", + "0.539679 | \n", + "0.614594 | \n", + "0.667421 | \n", + "0.553523 | \n", + "
| 2 | \n", + "10M_001_bs1536 | \n", + "rand_w_XY | \n", + "liver | \n", + "9 | \n", + "0.239645 | \n", + "0.472204 | \n", + "0.578763 | \n", + "0.462243 | \n", + "
| 3 | \n", + "10M_001_bs1536 | \n", + "rand_w_XY | \n", + "blood | \n", + "58 | \n", + "0.582606 | \n", + "0.752851 | \n", + "0.817974 | \n", + "0.702261 | \n", + "
| 4 | \n", + "10M_001_bs1536 | \n", + "rand_w_XY | \n", + "lung | \n", + "52 | \n", + "0.457357 | \n", + "0.577314 | \n", + "0.696895 | \n", + "0.544657 | \n", + "
| 5 | \n", + "10M_001_bs1536 | \n", + "rand_w_XY | \n", + "small intestine | \n", + "45 | \n", + "0.381441 | \n", + "0.521717 | \n", + "0.527962 | \n", + "0.465526 | \n", + "
| 6 | \n", + "19M_001_bs2048 | \n", + "rand_w_XY | \n", + "brain | \n", + "47 | \n", + "0.551584 | \n", + "0.609105 | \n", + "0.791977 | \n", + "0.658604 | \n", + "
| 7 | \n", + "19M_001_bs2048 | \n", + "rand_w_XY | \n", + "heart | \n", + "20 | \n", + "0.493673 | \n", + "0.517270 | \n", + "0.557064 | \n", + "0.521445 | \n", + "
| 8 | \n", + "19M_001_bs2048 | \n", + "rand_w_XY | \n", + "liver | \n", + "9 | \n", + "0.688776 | \n", + "0.763021 | \n", + "0.890450 | \n", + "0.789002 | \n", + "
| 9 | \n", + "19M_001_bs2048 | \n", + "rand_w_XY | \n", + "blood | \n", + "58 | \n", + "0.601608 | \n", + "0.696441 | \n", + "0.802608 | \n", + "0.693085 | \n", + "
| 10 | \n", + "19M_001_bs2048 | \n", + "rand_w_XY | \n", + "lung | \n", + "52 | \n", + "0.323605 | \n", + "0.533333 | \n", + "0.654947 | \n", + "0.469461 | \n", + "
| 11 | \n", + "19M_001_bs2048 | \n", + "rand_w_XY | \n", + "small intestine | \n", + "45 | \n", + "0.559091 | \n", + "0.622530 | \n", + "0.722120 | \n", + "0.623570 | \n", + "
| 12 | \n", + "30M_001_bs2560 | \n", + "rand_w_XY | \n", + "brain | \n", + "47 | \n", + "0.625016 | \n", + "0.685279 | \n", + "0.817331 | \n", + "0.698927 | \n", + "
| 13 | \n", + "30M_001_bs2560 | \n", + "rand_w_XY | \n", + "heart | \n", + "20 | \n", + "0.397214 | \n", + "0.433536 | \n", + "0.525699 | \n", + "0.465946 | \n", + "
| 14 | \n", + "30M_001_bs2560 | \n", + "rand_w_XY | \n", + "liver | \n", + "9 | \n", + "0.361523 | \n", + "0.589410 | \n", + "0.756098 | \n", + "0.525388 | \n", + "
| 15 | \n", + "30M_001_bs2560 | \n", + "rand_w_XY | \n", + "blood | \n", + "58 | \n", + "0.611582 | \n", + "0.678564 | \n", + "0.800239 | \n", + "0.701570 | \n", + "
| 16 | \n", + "30M_001_bs2560 | \n", + "rand_w_XY | \n", + "lung | \n", + "52 | \n", + "0.349583 | \n", + "0.577220 | \n", + "0.716111 | \n", + "0.520288 | \n", + "
| 17 | \n", + "30M_001_bs2560 | \n", + "rand_w_XY | \n", + "small intestine | \n", + "45 | \n", + "0.361742 | \n", + "0.535714 | \n", + "0.619444 | \n", + "0.494956 | \n", + "
| 18 | \n", + "59M_001_bs3072 | \n", + "rand_w_XY | \n", + "brain | \n", + "47 | \n", + "0.653625 | \n", + "0.764461 | \n", + "0.837112 | \n", + "0.739307 | \n", + "
| 19 | \n", + "59M_001_bs3072 | \n", + "rand_w_XY | \n", + "heart | \n", + "20 | \n", + "0.642570 | \n", + "0.745888 | \n", + "0.781357 | \n", + "0.699856 | \n", + "
| 20 | \n", + "59M_001_bs3072 | \n", + "rand_w_XY | \n", + "liver | \n", + "9 | \n", + "0.604477 | \n", + "0.627604 | \n", + "0.705525 | \n", + "0.691388 | \n", + "
| 21 | \n", + "59M_001_bs3072 | \n", + "rand_w_XY | \n", + "blood | \n", + "58 | \n", + "0.637326 | \n", + "0.780729 | \n", + "0.894595 | \n", + "0.751499 | \n", + "
| 22 | \n", + "59M_001_bs3072 | \n", + "rand_w_XY | \n", + "lung | \n", + "52 | \n", + "0.284054 | \n", + "0.572086 | \n", + "0.671979 | \n", + "0.481074 | \n", + "
| 23 | \n", + "59M_001_bs3072 | \n", + "rand_w_XY | \n", + "small intestine | \n", + "45 | \n", + "0.433333 | \n", + "0.503319 | \n", + "0.565447 | \n", + "0.470335 | \n", + "
| \n", + " | cell_type | \n", + "auc | \n", + "
|---|---|---|
| 0 | \n", + "Bergmann glial cell | \n", + "1.000000 | \n", + "
| 15 | \n", + "interneuron | \n", + "1.000000 | \n", + "
| 26 | \n", + "pericyte | \n", + "1.000000 | \n", + "
| 13 | \n", + "glial cell | \n", + "0.999755 | \n", + "
| 4 | \n", + "L6b glutamatergic cortical neuron | \n", + "0.902277 | \n", + "
| 18 | \n", + "mature astrocyte | \n", + "0.889546 | \n", + "
| 2 | \n", + "L2/3-6 intratelencephalic projecting glutamate... | \n", + "0.867692 | \n", + "
| 12 | \n", + "ependymal cell | \n", + "0.852134 | \n", + "
| 21 | \n", + "near-projecting glutamatergic cortical neuron | \n", + "0.832105 | \n", + "
| 6 | \n", + "astrocyte of the cerebral cortex | \n", + "0.828838 | \n", + "
| 7 | \n", + "caudal ganglionic eminence derived GABAergic c... | \n", + "0.811107 | \n", + "
| 10 | \n", + "corticothalamic-projecting glutamatergic corti... | \n", + "0.808834 | \n", + "
| 3 | \n", + "L5 extratelencephalic projecting glutamatergic... | \n", + "0.799732 | \n", + "
| 19 | \n", + "mature microglial cell | \n", + "0.794965 | \n", + "
| 25 | \n", + "oligodendrocyte precursor cell | \n", + "0.777512 | \n", + "
| 16 | \n", + "lamp5 GABAergic cortical interneuron | \n", + "0.772181 | \n", + "
| 24 | \n", + "oligodendrocyte | \n", + "0.756742 | \n", + "
| 28 | \n", + "sncg GABAergic cortical interneuron | \n", + "0.750407 | \n", + "
| 1 | \n", + "GABAergic neuron | \n", + "0.745163 | \n", + "
| 31 | \n", + "vip GABAergic cortical interneuron | \n", + "0.708835 | \n", + "
| 9 | \n", + "chandelier pvalb GABAergic cortical interneuron | \n", + "0.697292 | \n", + "
| 14 | \n", + "glutamatergic neuron | \n", + "0.687426 | \n", + "
| 5 | \n", + "astrocyte | \n", + "0.675221 | \n", + "
| 29 | \n", + "sst GABAergic cortical interneuron | \n", + "0.661553 | \n", + "
| 23 | \n", + "neuron | \n", + "0.629842 | \n", + "
| 27 | \n", + "pvalb GABAergic cortical interneuron | \n", + "0.623205 | \n", + "
| 11 | \n", + "endothelial cell | \n", + "0.612766 | \n", + "
| 30 | \n", + "vascular leptomeningeal cell | \n", + "0.583333 | \n", + "
| 20 | \n", + "microglial cell | \n", + "0.578296 | \n", + "
| 8 | \n", + "cerebral cortex endothelial cell | \n", + "0.497608 | \n", + "
| 22 | \n", + "neural cell | \n", + "0.490929 | \n", + "
| 17 | \n", + "macrophage | \n", + "0.022541 | \n", + "
| \n", + " | prefix | \n", + "val_adata_id | \n", + "metadata_predictions_type | \n", + "labels | \n", + "names | \n", + "cell_type | \n", + "coarse_codes | \n", + "logits_coarse_0 | \n", + "logits_coarse_1 | \n", + "logits_coarse_2 | \n", + "logits_coarse_3 | \n", + "logits_coarse_4 | \n", + "logits_coarse_5 | \n", + "logits_coarse_6 | \n", + "logits_coarse_7 | \n", + "train_donor_dataset_count | \n", + "train_cell_count | \n", + "train_cell_fraction | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "10M_001_bs1536 | \n", + "1 | \n", + "high_w_XY | \n", + "dentate nucleus | \n", + "UBERON:0002132 | \n", + "oligodendrocyte | \n", + "0 | \n", + "-0.006080 | \n", + "-11.639028 | \n", + "-14.243156 | \n", + "-8.234098 | \n", + "-16.060185 | \n", + "-9.945067 | \n", + "-13.658438 | \n", + "-5.160767 | \n", + "904.0 | \n", + "1394984.0 | \n", + "0.032378 | \n", + "
| 1 | \n", + "10M_001_bs1536 | \n", + "1 | \n", + "high_w_XY | \n", + "dentate nucleus | \n", + "UBERON:0002132 | \n", + "oligodendrocyte | \n", + "0 | \n", + "-0.000114 | \n", + "-10.855491 | \n", + "-14.818631 | \n", + "-15.753994 | \n", + "-16.163912 | \n", + "-10.673646 | \n", + "-16.669695 | \n", + "-9.552891 | \n", + "904.0 | \n", + "1394984.0 | \n", + "0.032378 | \n", + "
| 3 | \n", + "10M_001_bs1536 | \n", + "1 | \n", + "high_w_XY | \n", + "dentate nucleus | \n", + "UBERON:0002132 | \n", + "oligodendrocyte | \n", + "0 | \n", + "-0.018111 | \n", + "-10.621233 | \n", + "-13.099631 | \n", + "-6.336529 | \n", + "-15.696574 | \n", + "-9.295384 | \n", + "-14.406444 | \n", + "-4.131512 | \n", + "904.0 | \n", + "1394984.0 | \n", + "0.032378 | \n", + "
| 5 | \n", + "10M_001_bs1536 | \n", + "1 | \n", + "high_w_XY | \n", + "dentate nucleus | \n", + "UBERON:0002132 | \n", + "cerebellar granule cell | \n", + "0 | \n", + "-0.007204 | \n", + "-8.337449 | \n", + "-11.130719 | \n", + "-10.076913 | \n", + "-13.889114 | \n", + "-11.213383 | \n", + "-7.973660 | \n", + "-5.032390 | \n", + "42.0 | \n", + "71069.0 | \n", + "0.001650 | \n", + "
| 6 | \n", + "10M_001_bs1536 | \n", + "1 | \n", + "high_w_XY | \n", + "dentate nucleus | \n", + "UBERON:0002132 | \n", + "cerebellar granule cell | \n", + "0 | \n", + "-0.001497 | \n", + "-9.967198 | \n", + "-13.935783 | \n", + "-14.410442 | \n", + "-15.539149 | \n", + "-13.466232 | \n", + "-9.104946 | \n", + "-6.618959 | \n", + "42.0 | \n", + "71069.0 | \n", + "0.001650 | \n", + "
| \n", + " | prefix | \n", + "metadata_predictions_type | \n", + "n_cell_types | \n", + "auc_25 | \n", + "auc_50 | \n", + "auc_75 | \n", + "auc_mean | \n", + "
|---|---|---|---|---|---|---|---|
| 0 | \n", + "10M_001_bs1536 | \n", + "high_w_XY | \n", + "212 | \n", + "0.039974 | \n", + "0.490707 | \n", + "0.951585 | \n", + "0.489814 | \n", + "
| 1 | \n", + "19M_001_bs2048 | \n", + "high_w_XY | \n", + "212 | \n", + "0.061122 | \n", + "0.455472 | \n", + "0.833333 | \n", + "0.461810 | \n", + "
| 2 | \n", + "30M_001_bs2560 | \n", + "high_w_XY | \n", + "212 | \n", + "0.048542 | \n", + "0.371165 | \n", + "0.706816 | \n", + "0.403978 | \n", + "
| 3 | \n", + "59M_001_bs3072 | \n", + "high_w_XY | \n", + "212 | \n", + "0.012216 | \n", + "0.163286 | \n", + "0.716687 | \n", + "0.360065 | \n", + "
| \n", + " | cell_type | \n", + "auc | \n", + "
|---|---|---|
| 110 | \n", + "granule cell | \n", + "1.0 | \n", + "
| 111 | \n", + "gut endothelial cell | \n", + "1.0 | \n", + "
| 21 | \n", + "L2/3 intratelencephalic projecting glutamaterg... | \n", + "1.0 | \n", + "
| 120 | \n", + "inhibitory interneuron | \n", + "1.0 | \n", + "
| 136 | \n", + "lamp5 GABAergic cortical interneuron | \n", + "1.0 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "
| 116 | \n", + "hepatocyte | \n", + "0.0 | \n", + "
| 204 | \n", + "transitional stage B cell | \n", + "0.0 | \n", + "
| 202 | \n", + "transit amplifying cell | \n", + "0.0 | \n", + "
| 191 | \n", + "renal interstitial pericyte | \n", + "0.0 | \n", + "
| 122 | \n", + "intermediate monocyte | \n", + "0.0 | \n", + "
212 rows × 2 columns
\n", + "| \n", + " | prefix | \n", + "metadata_predictions_type | \n", + "n_cell_types | \n", + "accuracy_25 | \n", + "accuracy_50 | \n", + "accuracy_75 | \n", + "accuracy_mean | \n", + "
|---|---|---|---|---|---|---|---|
| 0 | \n", + "10M_001_bs1536 | \n", + "high_w_XY | \n", + "232 | \n", + "0.096354 | \n", + "0.404981 | \n", + "0.913234 | \n", + "0.467374 | \n", + "
| 1 | \n", + "19M_001_bs2048 | \n", + "high_w_XY | \n", + "232 | \n", + "0.126488 | \n", + "0.446124 | \n", + "0.925337 | \n", + "0.490484 | \n", + "
| 2 | \n", + "30M_001_bs2560 | \n", + "high_w_XY | \n", + "232 | \n", + "0.041151 | \n", + "0.325316 | \n", + "0.797334 | \n", + "0.414464 | \n", + "
| 3 | \n", + "59M_001_bs3072 | \n", + "high_w_XY | \n", + "232 | \n", + "0.008989 | \n", + "0.321792 | \n", + "0.885579 | \n", + "0.427038 | \n", + "
| \n", + " | cell_type | \n", + "accuracy | \n", + "
|---|---|---|
| 5 | \n", + "CD14-positive, CD16-positive monocyte | \n", + "1.0 | \n", + "
| 211 | \n", + "vip GABAergic cortical interneuron | \n", + "1.0 | \n", + "
| 105 | \n", + "forebrain neuroblast | \n", + "1.0 | \n", + "
| 96 | \n", + "epithelial cell of lower respiratory tract | \n", + "1.0 | \n", + "
| 21 | \n", + "L2/3 intratelencephalic projecting glutamaterg... | \n", + "1.0 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "
| 193 | \n", + "retina horizontal cell | \n", + "0.0 | \n", + "
| 13 | \n", + "CD8-alpha-alpha-positive, alpha-beta intraepit... | \n", + "0.0 | \n", + "
| 200 | \n", + "tracheal goblet cell | \n", + "0.0 | \n", + "
| 203 | \n", + "transit amplifying cell of colon | \n", + "0.0 | \n", + "
| 202 | \n", + "transit amplifying cell | \n", + "0.0 | \n", + "
212 rows × 2 columns
\n", + "| \n", + " | \n", + " | \n", + " | auc_mean | \n", + "balanced_accuracy_mean | \n", + "count | \n", + "assay | \n", + "
|---|---|---|---|---|---|---|
| prefix | \n", + "coarse_tissue | \n", + "disease_label | \n", + "\n", + " | \n", + " | \n", + " | \n", + " |
| 10M_001_bs1536 | \n", + "blood | \n", + "COVID-19 | \n", + "0.529299 | \n", + "0.505450 | \n", + "10 | \n", + "10x 5' v1 | \n", + "
| common variable immunodeficiency | \n", + "0.750724 | \n", + "0.500000 | \n", + "6 | \n", + "10x 5' v1 | \n", + "||
| post-COVID-19 disorder | \n", + "0.605068 | \n", + "0.500000 | \n", + "6 | \n", + "10x 5' v1 | \n", + "||
| systemic lupus erythematosus | \n", + "0.682581 | \n", + "0.500000 | \n", + "27 | \n", + "10x 3' v2 | \n", + "||
| brain | \n", + "COVID-19 | \n", + "0.734318 | \n", + "0.500000 | \n", + "24 | \n", + "10x 3' v3 | \n", + "|
| amyotrophic lateral sclerosis | \n", + "0.433463 | \n", + "0.500000 | \n", + "24 | \n", + "10x 3' v3 | \n", + "||
| dementia | \n", + "0.599291 | \n", + "0.500000 | \n", + "48 | \n", + "10x 3' v3 | \n", + "||
| lung | \n", + "COVID-19 | \n", + "0.857496 | \n", + "0.640500 | \n", + "4 | \n", + "10x 5' v1 | \n", + "|
| non-small cell lung carcinoma | \n", + "0.160025 | \n", + "0.500000 | \n", + "3 | \n", + "10x 3' v2 | \n", + "||
| squamous cell lung carcinoma | \n", + "0.396904 | \n", + "0.500000 | \n", + "3 | \n", + "10x 3' v2 | \n", + "||
| small intestine | \n", + "Crohn disease | \n", + "0.707470 | \n", + "0.500000 | \n", + "5 | \n", + "10x 3' v2 | \n", + "|
| 19M_001_bs2048 | \n", + "blood | \n", + "COVID-19 | \n", + "0.553816 | \n", + "0.511700 | \n", + "10 | \n", + "10x 5' v1 | \n", + "
| common variable immunodeficiency | \n", + "0.928521 | \n", + "0.500000 | \n", + "6 | \n", + "10x 5' v1 | \n", + "||
| post-COVID-19 disorder | \n", + "0.726175 | \n", + "0.500000 | \n", + "6 | \n", + "10x 5' v1 | \n", + "||
| systemic lupus erythematosus | \n", + "0.367019 | \n", + "0.500000 | \n", + "27 | \n", + "10x 3' v2 | \n", + "||
| brain | \n", + "COVID-19 | \n", + "0.644483 | \n", + "0.500000 | \n", + "24 | \n", + "10x 3' v3 | \n", + "|
| amyotrophic lateral sclerosis | \n", + "0.408419 | \n", + "0.500000 | \n", + "24 | \n", + "10x 3' v3 | \n", + "||
| dementia | \n", + "0.511539 | \n", + "0.500000 | \n", + "48 | \n", + "10x 3' v3 | \n", + "||
| lung | \n", + "COVID-19 | \n", + "0.833453 | \n", + "0.745750 | \n", + "4 | \n", + "10x 5' v1 | \n", + "|
| non-small cell lung carcinoma | \n", + "0.297680 | \n", + "0.500000 | \n", + "3 | \n", + "10x 3' v2 | \n", + "||
| squamous cell lung carcinoma | \n", + "0.532986 | \n", + "0.500000 | \n", + "3 | \n", + "10x 3' v2 | \n", + "||
| small intestine | \n", + "Crohn disease | \n", + "0.431057 | \n", + "0.500000 | \n", + "5 | \n", + "10x 3' v2 | \n", + "|
| 30M_001_bs2560 | \n", + "blood | \n", + "COVID-19 | \n", + "0.471444 | \n", + "0.529175 | \n", + "10 | \n", + "10x 5' v1 | \n", + "
| common variable immunodeficiency | \n", + "0.880490 | \n", + "0.500000 | \n", + "6 | \n", + "10x 5' v1 | \n", + "||
| post-COVID-19 disorder | \n", + "0.901318 | \n", + "0.500000 | \n", + "6 | \n", + "10x 5' v1 | \n", + "||
| systemic lupus erythematosus | \n", + "0.792833 | \n", + "0.500000 | \n", + "27 | \n", + "10x 3' v2 | \n", + "||
| brain | \n", + "COVID-19 | \n", + "0.786772 | \n", + "0.500000 | \n", + "24 | \n", + "10x 3' v3 | \n", + "|
| amyotrophic lateral sclerosis | \n", + "0.614216 | \n", + "0.500000 | \n", + "24 | \n", + "10x 3' v3 | \n", + "||
| dementia | \n", + "0.607612 | \n", + "0.500000 | \n", + "48 | \n", + "10x 3' v3 | \n", + "||
| lung | \n", + "COVID-19 | \n", + "0.732230 | \n", + "0.651875 | \n", + "4 | \n", + "10x 5' v1 | \n", + "|
| non-small cell lung carcinoma | \n", + "0.924707 | \n", + "0.511667 | \n", + "3 | \n", + "10x 3' v2 | \n", + "||
| squamous cell lung carcinoma | \n", + "0.803926 | \n", + "0.500000 | \n", + "3 | \n", + "10x 3' v2 | \n", + "||
| small intestine | \n", + "Crohn disease | \n", + "0.548762 | \n", + "0.500000 | \n", + "5 | \n", + "10x 3' v2 | \n", + "|
| 59M_001_bs3072 | \n", + "blood | \n", + "COVID-19 | \n", + "0.667377 | \n", + "0.521850 | \n", + "10 | \n", + "10x 5' v1 | \n", + "
| common variable immunodeficiency | \n", + "0.859101 | \n", + "0.500000 | \n", + "6 | \n", + "10x 5' v1 | \n", + "||
| post-COVID-19 disorder | \n", + "0.881168 | \n", + "0.500000 | \n", + "6 | \n", + "10x 5' v1 | \n", + "||
| systemic lupus erythematosus | \n", + "0.492928 | \n", + "0.500000 | \n", + "27 | \n", + "10x 3' v2 | \n", + "||
| brain | \n", + "COVID-19 | \n", + "0.661897 | \n", + "0.500000 | \n", + "24 | \n", + "10x 3' v3 | \n", + "|
| amyotrophic lateral sclerosis | \n", + "0.590576 | \n", + "0.500000 | \n", + "24 | \n", + "10x 3' v3 | \n", + "||
| dementia | \n", + "0.649248 | \n", + "0.500000 | \n", + "48 | \n", + "10x 3' v3 | \n", + "||
| lung | \n", + "COVID-19 | \n", + "0.749953 | \n", + "0.663875 | \n", + "4 | \n", + "10x 5' v1 | \n", + "|
| non-small cell lung carcinoma | \n", + "0.724588 | \n", + "0.561161 | \n", + "3 | \n", + "10x 3' v2 | \n", + "||
| squamous cell lung carcinoma | \n", + "0.601388 | \n", + "0.501167 | \n", + "3 | \n", + "10x 3' v2 | \n", + "||
| small intestine | \n", + "Crohn disease | \n", + "0.644288 | \n", + "0.500000 | \n", + "5 | \n", + "10x 3' v2 | \n", + "
| \n", + " | val_adata_id | \n", + "coarse_tissue | \n", + "disease | \n", + "
|---|---|---|---|
| 3 | \n", + "4 | \n", + "small intestine | \n", + "Crohn disease | \n", + "
| 6 | \n", + "7 | \n", + "small intestine | \n", + "Crohn disease | \n", + "
| 21 | \n", + "22 | \n", + "brain | \n", + "COVID-19 | \n", + "
| 22 | \n", + "23 | \n", + "brain | \n", + "COVID-19 | \n", + "
| 23 | \n", + "24 | \n", + "brain | \n", + "COVID-19 | \n", + "
| 28 | \n", + "29 | \n", + "brain | \n", + "amyotrophic lateral sclerosis | \n", + "
| 29 | \n", + "30 | \n", + "blood | \n", + "common variable immunodeficiency | \n", + "
| 30 | \n", + "31 | \n", + "blood | \n", + "common variable immunodeficiency | \n", + "
| 31 | \n", + "32 | \n", + "blood | \n", + "common variable immunodeficiency | \n", + "
| 58 | \n", + "59 | \n", + "brain | \n", + "amyotrophic lateral sclerosis | \n", + "
| 66 | \n", + "67 | \n", + "lung | \n", + "COVID-19 | \n", + "
| 70 | \n", + "71 | \n", + "brain | \n", + "amyotrophic lateral sclerosis | \n", + "
| 74 | \n", + "75 | \n", + "blood | \n", + "COVID-19 | \n", + "
| 80 | \n", + "81 | \n", + "blood | \n", + "post-COVID-19 disorder | \n", + "
| 81 | \n", + "82 | \n", + "blood | \n", + "post-COVID-19 disorder | \n", + "
| 82 | \n", + "83 | \n", + "blood | \n", + "post-COVID-19 disorder | \n", + "
| 93 | \n", + "94 | \n", + "blood | \n", + "COVID-19 | \n", + "
| 94 | \n", + "95 | \n", + "blood | \n", + "COVID-19 | \n", + "
| 102 | \n", + "103 | \n", + "small intestine | \n", + "Crohn disease | \n", + "
| 106 | \n", + "107 | \n", + "lung | \n", + "COVID-19 | \n", + "
| 107 | \n", + "108 | \n", + "lung | \n", + "COVID-19 | \n", + "
| \n", + " | dataset_id | \n", + "tissue | \n", + "condition | \n", + "
|---|---|---|---|
| 0 | \n", + "4 | \n", + "small intestine | \n", + "Crohn disease | \n", + "
| 1 | \n", + "7 | \n", + "small intestine | \n", + "Crohn disease | \n", + "
| 2 | \n", + "22 | \n", + "brain | \n", + "COVID-19 | \n", + "
| 3 | \n", + "23 | \n", + "brain | \n", + "COVID-19 | \n", + "
| 4 | \n", + "24 | \n", + "brain | \n", + "COVID-19 | \n", + "
| 5 | \n", + "29 | \n", + "brain | \n", + "amyotrophic lateral sclerosis | \n", + "
| 6 | \n", + "30 | \n", + "blood | \n", + "common variable immunodeficiency | \n", + "
| 7 | \n", + "31 | \n", + "blood | \n", + "common variable immunodeficiency | \n", + "
| 8 | \n", + "32 | \n", + "blood | \n", + "common variable immunodeficiency | \n", + "
| 9 | \n", + "59 | \n", + "brain | \n", + "amyotrophic lateral sclerosis | \n", + "
| 10 | \n", + "67 | \n", + "lung | \n", + "COVID-19 | \n", + "
| 11 | \n", + "71 | \n", + "brain | \n", + "amyotrophic lateral sclerosis | \n", + "
| 12 | \n", + "75 | \n", + "blood | \n", + "COVID-19 | \n", + "
| 13 | \n", + "81 | \n", + "blood | \n", + "post-COVID-19 disorder | \n", + "
| 14 | \n", + "82 | \n", + "blood | \n", + "post-COVID-19 disorder | \n", + "
| 15 | \n", + "83 | \n", + "blood | \n", + "post-COVID-19 disorder | \n", + "
| 16 | \n", + "94 | \n", + "blood | \n", + "COVID-19 | \n", + "
| 17 | \n", + "95 | \n", + "blood | \n", + "COVID-19 | \n", + "
| 18 | \n", + "103 | \n", + "small intestine | \n", + "Crohn disease | \n", + "
| 19 | \n", + "107 | \n", + "lung | \n", + "COVID-19 | \n", + "
| 20 | \n", + "108 | \n", + "lung | \n", + "COVID-19 | \n", + "
| \n", + " | dataset_id | \n", + "tissue | \n", + "condition | \n", + "
|---|---|---|---|
| 0 | \n", + "4 | \n", + "small intestine | \n", + "Crohn disease | \n", + "
| 1 | \n", + "7 | \n", + "small intestine | \n", + "Crohn disease | \n", + "
| 2 | \n", + "22 | \n", + "brain | \n", + "COVID-19 | \n", + "
| 3 | \n", + "23 | \n", + "brain | \n", + "COVID-19 | \n", + "
| 4 | \n", + "24 | \n", + "brain | \n", + "COVID-19 | \n", + "
| 5 | \n", + "29 | \n", + "brain | \n", + "amyotrophic lateral sclerosis | \n", + "
| 6 | \n", + "30 | \n", + "blood | \n", + "common variable immunodeficiency | \n", + "
| 7 | \n", + "31 | \n", + "blood | \n", + "common variable immunodeficiency | \n", + "
| 8 | \n", + "32 | \n", + "blood | \n", + "common variable immunodeficiency | \n", + "
| 9 | \n", + "59 | \n", + "brain | \n", + "amyotrophic lateral sclerosis | \n", + "
| 10 | \n", + "67 | \n", + "lung | \n", + "COVID-19 | \n", + "
| 11 | \n", + "71 | \n", + "brain | \n", + "amyotrophic lateral sclerosis | \n", + "
| 12 | \n", + "75 | \n", + "blood | \n", + "COVID-19 | \n", + "
| 13 | \n", + "81 | \n", + "blood | \n", + "post-COVID-19 disorder | \n", + "
| 14 | \n", + "82 | \n", + "blood | \n", + "post-COVID-19 disorder | \n", + "
| 15 | \n", + "83 | \n", + "blood | \n", + "post-COVID-19 disorder | \n", + "
| 16 | \n", + "94 | \n", + "blood | \n", + "COVID-19 | \n", + "
| 17 | \n", + "95 | \n", + "blood | \n", + "COVID-19 | \n", + "
| 18 | \n", + "103 | \n", + "small intestine | \n", + "Crohn disease | \n", + "
| 19 | \n", + "107 | \n", + "lung | \n", + "COVID-19 | \n", + "
| 20 | \n", + "108 | \n", + "lung | \n", + "COVID-19 | \n", + "
| \n", + " | cell_type_ontology_term_id | \n", + "num_cells | \n", + "
|---|---|---|
| 0 | \n", + "CL:0000540 | \n", + "2938728 | \n", + "
| 1 | \n", + "CL:4023040 | \n", + "1695623 | \n", + "
| 2 | \n", + "CL:0000128 | \n", + "1294620 | \n", + "
| 3 | \n", + "CL:0000624 | \n", + "1238275 | \n", + "
| 4 | \n", + "CL:0000625 | \n", + "1179803 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "
| 666 | \n", + "CL:0011101 | \n", + "14 | \n", + "
| 667 | \n", + "CL:0000103 | \n", + "12 | \n", + "
| 668 | \n", + "CL:0000019 | \n", + "11 | \n", + "
| 669 | \n", + "CL:0002280 | \n", + "10 | \n", + "
| 670 | \n", + "CL:0000218 | \n", + "8 | \n", + "
671 rows × 2 columns
\n", + "| \n", + " | cell_type | \n", + "num_cells | \n", + "
|---|---|---|
| 0 | \n", + "neuron | \n", + "2938728 | \n", + "
| 1 | \n", + "L2/3-6 intratelencephalic projecting glutamate... | \n", + "1695623 | \n", + "
| 2 | \n", + "oligodendrocyte | \n", + "1294620 | \n", + "
| 3 | \n", + "CD4-positive, alpha-beta T cell | \n", + "1238275 | \n", + "
| 4 | \n", + "CD8-positive, alpha-beta T cell | \n", + "1179803 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "
| 666 | \n", + "bone marrow cell | \n", + "14 | \n", + "
| 667 | \n", + "bipolar neuron | \n", + "12 | \n", + "
| 668 | \n", + "sperm | \n", + "11 | \n", + "
| 669 | \n", + "type N enteroendocrine cell | \n", + "10 | \n", + "
| 670 | \n", + "myelinating Schwann cell | \n", + "8 | \n", + "
671 rows × 2 columns
\n", + "| \n", + " | cell_type | \n", + "num_cells | \n", + "new_num_cells | \n", + "
|---|---|---|---|
| 0 | \n", + "neuron | \n", + "2938728 | \n", + "1952112 | \n", + "
| 1 | \n", + "sensory neuron | \n", + "1605 | \n", + "1799 | \n", + "
| 2 | \n", + "primary cultured cell | \n", + "80 | \n", + "64 | \n", + "
| 3 | \n", + "cultured cell | \n", + "0 | \n", + "12 | \n", + "
| 4 | \n", + "fibroblast neural crest derived | \n", + "0 | \n", + "95 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "... | \n", + "
| 885 | \n", + "metallothionein-positive alveolar macrophage | \n", + "357 | \n", + "275 | \n", + "
| 886 | \n", + "lung interstitial macrophage | \n", + "302 | \n", + "180 | \n", + "
| 887 | \n", + "deuterosomal cell | \n", + "67 | \n", + "53 | \n", + "
| 888 | \n", + "respiratory suprabasal cell | \n", + "1792 | \n", + "1204 | \n", + "
| 889 | \n", + "luminal hormone-sensing cell of mammary gland | \n", + "196476 | \n", + "113177 | \n", + "
890 rows × 3 columns
\n", + "| \n", + " | development_stage_ontology_term_id | \n", + "num_cells | \n", + "
|---|---|---|
| 0 | \n", + "unknown | \n", + "2645739 | \n", + "
| 1 | \n", + "HsapDv:0000095 | \n", + "1768880 | \n", + "
| 2 | \n", + "HsapDv:0000144 | \n", + "1768121 | \n", + "
| 3 | \n", + "HsapDv:0000123 | \n", + "1411475 | \n", + "
| 4 | \n", + "HsapDv:0000136 | \n", + "1396533 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "
| 169 | \n", + "HsapDv:0000219 | \n", + "2240 | \n", + "
| 170 | \n", + "HsapDv:0000223 | \n", + "976 | \n", + "
| 171 | \n", + "HsapDv:0000221 | \n", + "930 | \n", + "
| 172 | \n", + "HsapDv:0000220 | \n", + "867 | \n", + "
| 173 | \n", + "HsapDv:0000192 | \n", + "509 | \n", + "
174 rows × 2 columns
\n", + "| \n", + " | development_stage | \n", + "num_cells | \n", + "
|---|---|---|
| 0 | \n", + "unknown | \n", + "2645739 | \n", + "
| 1 | \n", + "80 year-old and over human stage | \n", + "1768880 | \n", + "
| 2 | \n", + "50-year-old human stage | \n", + "1768121 | \n", + "
| 3 | \n", + "29-year-old human stage | \n", + "1411475 | \n", + "
| 4 | \n", + "42-year-old human stage | \n", + "1396533 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "
| 169 | \n", + "93-year-old human stage | \n", + "2240 | \n", + "
| 170 | \n", + "97-year-old human stage | \n", + "976 | \n", + "
| 171 | \n", + "95-year-old human stage | \n", + "930 | \n", + "
| 172 | \n", + "94-year-old human stage | \n", + "867 | \n", + "
| 173 | \n", + "19-month-old human stage | \n", + "509 | \n", + "
174 rows × 2 columns
\n", + "| \n", + " | disease_ontology_term_id | \n", + "num_cells | \n", + "
|---|---|---|
| 0 | \n", + "PATO:0000461 | \n", + "25905102 | \n", + "
| 1 | \n", + "MONDO:0100096 | \n", + "4109684 | \n", + "
| 2 | \n", + "MONDO:0001627 | \n", + "1135641 | \n", + "
| 3 | \n", + "MONDO:0018177 | \n", + "1001237 | \n", + "
| 4 | \n", + "MONDO:0007915 | \n", + "708987 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "
| 93 | \n", + "MONDO:0012419 | \n", + "1614 | \n", + "
| 94 | \n", + "MONDO:0005348 | \n", + "1227 | \n", + "
| 95 | \n", + "MONDO:0004994 | \n", + "1027 | \n", + "
| 96 | \n", + "MONDO:0019562 | \n", + "1018 | \n", + "
| 97 | \n", + "MONDO:0002513 | \n", + "57 | \n", + "
98 rows × 2 columns
\n", + "| \n", + " | disease | \n", + "num_cells | \n", + "
|---|---|---|
| 0 | \n", + "normal | \n", + "25905102 | \n", + "
| 1 | \n", + "COVID-19 | \n", + "4109684 | \n", + "
| 2 | \n", + "dementia | \n", + "1135641 | \n", + "
| 3 | \n", + "glioblastoma | \n", + "1001237 | \n", + "
| 4 | \n", + "systemic lupus erythematosus | \n", + "708987 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "
| 93 | \n", + "age related macular degeneration 7 | \n", + "1614 | \n", + "
| 94 | \n", + "keloid | \n", + "1227 | \n", + "
| 95 | \n", + "cardiomyopathy | \n", + "1027 | \n", + "
| 96 | \n", + "localized scleroderma | \n", + "1018 | \n", + "
| 97 | \n", + "kidney benign neoplasm | \n", + "57 | \n", + "
98 rows × 2 columns
\n", + "| \n", + " | sex_ontology_term_id | \n", + "num_cells | \n", + "
|---|---|---|
| 0 | \n", + "PATO:0000384 | \n", + "19181831 | \n", + "
| 1 | \n", + "PATO:0000383 | \n", + "16267559 | \n", + "
| 2 | \n", + "unknown | \n", + "2857853 | \n", + "
| \n", + " | sex | \n", + "num_cells | \n", + "
|---|---|---|
| 0 | \n", + "male | \n", + "19181831 | \n", + "
| 1 | \n", + "female | \n", + "16267559 | \n", + "
| 2 | \n", + "unknown | \n", + "2857853 | \n", + "
| \n", + " | tissue_ontology_term_id | \n", + "num_cells | \n", + "
|---|---|---|
| 0 | \n", + "UBERON:0000178 | \n", + "9446186 | \n", + "
| 1 | \n", + "UBERON:0002048 | \n", + "2412727 | \n", + "
| 2 | \n", + "UBERON:0000310 | \n", + "2269902 | \n", + "
| 3 | \n", + "UBERON:0009834 | \n", + "1591509 | \n", + "
| 4 | \n", + "UBERON:0002771 | \n", + "1317262 | \n", + "
| \n", + " | tissue | \n", + "num_cells | \n", + "
|---|---|---|
| 0 | \n", + "blood | \n", + "9446186 | \n", + "
| 1 | \n", + "lung | \n", + "2412727 | \n", + "
| 2 | \n", + "breast | \n", + "2269902 | \n", + "
| 3 | \n", + "dorsolateral prefrontal cortex | \n", + "1591509 | \n", + "
| 4 | \n", + "middle temporal gyrus | \n", + "1317262 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "
| 259 | \n", + "left parietal lobe | \n", + "163 | \n", + "
| 260 | \n", + "vault of skull | \n", + "123 | \n", + "
| 261 | \n", + "kidney blood vessel | \n", + "47 | \n", + "
| 262 | \n", + "skin of face | \n", + "37 | \n", + "
| 263 | \n", + "skin of shoulder | \n", + "37 | \n", + "
264 rows × 2 columns
\n", + "