From 0f6646b81728be7854ebed88a0911fc4979f45de Mon Sep 17 00:00:00 2001 From: MaximilianLombardo Date: Tue, 8 Oct 2024 22:46:04 +0200 Subject: [PATCH] docs: Update 4_1__Hosted Tutorials.mdx (#7356) --- .../4_1__Hosted Tutorials.mdx | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/frontend/doc-site/04__Analyze Public Data/4_1__Hosted Tutorials.mdx b/frontend/doc-site/04__Analyze Public Data/4_1__Hosted Tutorials.mdx index 9bbd5f7b2560e..2a8d426ab0111 100644 --- a/frontend/doc-site/04__Analyze Public Data/4_1__Hosted Tutorials.mdx +++ b/frontend/doc-site/04__Analyze Public Data/4_1__Hosted Tutorials.mdx @@ -14,7 +14,7 @@ CELLxGENE Explorer's user interface organizes single cell data similarly to how **Key Concepts**: User Interface Explanation - + ## Examining Categorical Metadata @@ -22,7 +22,7 @@ Categorical metadata (such as tissue of origin or cell type) can be used in a nu **Key Concepts**: Categorical Metadata, Selecting Cells by Category (i.e. cell type), Interaction Between Categorical Metadata Fields - + ## Find Cells Where a Gene is Expressed @@ -30,7 +30,7 @@ Numerical metadata (such gene expression features or QC metrics such as number o **Key Concepts**: Numerical Metadata, Cell Filtering and Selection, Interaction Between Numerical Metadata, Categorical Metadata Fields - + ## Selecting and Subsetting Cells @@ -38,7 +38,7 @@ Explorer allows for the complex selection of cells via selection directly on the **Key Concepts**: Categorical Metadata Selection, Numerical Metadata Selection, Complex Selection (combining selection methods) - + ## Compare Expression of Multiple Genes @@ -46,7 +46,7 @@ Explorer allows you to compare the expression of multiple genes via bivariate pl **Key Concepts**: Gene Expression, Co-expression, Cell Selection, Subsetting - + ## Using Gene Sets to Learn About Cell Population Functional Characteristics @@ -58,7 +58,7 @@ _Listed below is a comma separated gene set list for use with this tutorial._ ACAA1, ACAA2, ACADL, ACADM, ACADS, ACADSB, ACADVL, ACAT1, ACAT2, ACOX1, ACOX3, ACSL1, ACSL3, ACSL4, ACSL5, ACSL6, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, ALDH1B1, ALDH2, ALDH3A2, ALDH7A1, ALDH9A1, CPT1A, CPT1B, CPT1C, CPT2, CYP4A11, CYP4A22, ECHS1, ECI1, ECI2, EHHADH, GCDH, HADH, HADHA, HADHB - + ## Find Marker Genes @@ -66,6 +66,6 @@ Explorer allows you to find marker genes between selected cell populations. **Key Concepts**: Gene Expression, Differential Expression, Cell Selection, Subsetting - + Note: You can find more information here about how our differential expression is calculated. In brief, we use a Welch's t-test. While we are aware that single cell data does not always meet the assumptions imposed by this test, we utilize it because it performs well at identifying the _most_ differentially expressed genes, and this is what our feature returns.