diff --git a/scripts/generate_cellguide_pipeline_test_fixtures.py b/scripts/generate_cellguide_pipeline_test_fixtures.py index 79fda3a662b1e..f289aa256a190 100644 --- a/scripts/generate_cellguide_pipeline_test_fixtures.py +++ b/scripts/generate_cellguide_pipeline_test_fixtures.py @@ -53,7 +53,7 @@ TEST_SNAPSHOT = "realistic-test-snapshot" -CANONICAL_MARKER_GENE_TEST_TISSUES = ["heart", "blood"] +CANONICAL_MARKER_GENE_TEST_TISSUES = ["heart", "lung"] """ ################################# DANGER ####################################### diff --git a/tests/unit/backend/cellguide/pipeline/fixtures/asctb_master_sheet.json b/tests/unit/backend/cellguide/pipeline/fixtures/asctb_master_sheet.json index 6b3e513f4e7d0..8196050fb3ab3 100644 --- a/tests/unit/backend/cellguide/pipeline/fixtures/asctb_master_sheet.json +++ b/tests/unit/backend/cellguide/pipeline/fixtures/asctb_master_sheet.json @@ -1 +1 @@ -{"heart": {"data": [{"rowNumber": 11, "anatomical_structures": [{"id": "UBERON:0000948", "rdfs_label": "heart", "name": "heart"}, {"id": "UBERON:0002078", "rdfs_label": "right cardiac atrium", "name": "right atrium"}, {"id": "UBERON:0002351", "rdfs_label": "sinoatrial node", "name": "sinoatrial node", "notes": ""}], "cell_types": [{"id": "CL:1000477", "rdfs_label": "cardiac pacemaker cell of sinoatrial node", "name": "pacemaker cell", "notes": ""}], "biomarkers": [{"id": "HGNC:16882", "rdfs_label": "hyperpolarization activated cyclic nucleotide gated potassium channel 4", "name": "HCN4", "b_type": "gene", "notes": ""}, {"id": "HGNC:4280", "rdfs_label": "gap junction protein gamma 1", "name": "GJC1", "b_type": "gene", "notes": "alias Cx45"}], "biomarkers_protein": [], "biomarkers_gene": [{"id": "HGNC:16882", "rdfs_label": "hyperpolarization activated cyclic nucleotide gated potassium channel 4", "name": "HCN4", "b_type": "gene", "notes": ""}, {"id": "HGNC:4280", "rdfs_label": "gap junction protein gamma 1", "name": "GJC1", "b_type": "gene", "notes": "alias Cx45"}], "biomarkers_lipids": [], "biomarkers_meta": [], "biomarkers_prot": [], "ftu_types": [], "references": []}, {"rowNumber": 12, "anatomical_structures": [{"id": "UBERON:0000948", "rdfs_label": "heart", "name": "heart"}, {"id": "UBERON:0002078", "rdfs_label": "right cardiac atrium", "name": "right atrium"}, {"id": "FMA:3823", "rdfs_label": "Sinoatrial nodal branch of right coronary artery", "name": "sinoatrial nodal artery", "notes": ""}], "cell_types": [{"id": "CL:1000413", "rdfs_label": "endothelial cell of artery", "name": "endothelial cell", "notes": ""}], "biomarkers": [{"id": "HGNC:8823", "rdfs_label": "platelet and endothelial cell adhesion molecule 1", "name": "PECAM1", "b_type": "gene", "notes": ""}, {"id": "HGNC:12726", "rdfs_label": "von Willebrand factor", "name": "VWF", "b_type": "gene", "notes": ""}, {"id": "HGNC:1764", "rdfs_label": "cadherin 5", "name": "CDH5", "b_type": "gene", "notes": ""}], "biomarkers_protein": [], "biomarkers_gene": [{"id": "HGNC:8823", "rdfs_label": "platelet and endothelial cell adhesion molecule 1", "name": "PECAM1", "b_type": "gene", "notes": ""}, {"id": "HGNC:12726", "rdfs_label": "von Willebrand factor", "name": "VWF", "b_type": "gene", "notes": ""}, {"id": "HGNC:1764", "rdfs_label": "cadherin 5", "name": "CDH5", "b_type": "gene", "notes": ""}], "biomarkers_lipids": [], "biomarkers_meta": [], "biomarkers_prot": [], "ftu_types": [], "references": [{"id": "", "doi": "", "notes": "arises from the right coronary artery in around 60% of people. In about 40% of cases, the sinoatrial artery is a branch of the left circumflex coronary artery"}]}, {"rowNumber": 13, "anatomical_structures": [{"id": "UBERON:0000948", "rdfs_label": "heart", "name": "heart"}, {"id": "UBERON:0002078", "rdfs_label": "right cardiac atrium", "name": "right atrium"}, {"id": "FMA:3823", "rdfs_label": "Sinoatrial nodal branch of right coronary artery", "name": "sinoatrial nodal artery", "notes": ""}], "cell_types": [{"id": "CL:0002592", "rdfs_label": "smooth muscle cell of the coronary artery", "name": "smooth muscle cell", "notes": ""}], "biomarkers": [{"id": "HGNC:7569", "rdfs_label": "myosin heavy chain 11", "name": "MYH11", "b_type": "gene", "notes": ""}, {"id": "HGNC:11553", "rdfs_label": "transgelin", "name": "TAGLN", "b_type": "gene", "notes": ""}, {"id": "HGNC:130", "rdfs_label": "actin alpha 2, smooth muscle", "name": "ACTA2", "b_type": "gene", "notes": ""}], "biomarkers_protein": [], "biomarkers_gene": [{"id": "HGNC:7569", "rdfs_label": "myosin 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"epicardium", "name": "Epicardium"}, {"id": "FMA:83539", "rdfs_label": "", "name": "", "notes": ""}], "cell_types": [{"id": "CL:0002138", "rdfs_label": "endothelial cell of lymphatic vessel", "name": "lymphatic endothelial cell", "notes": ""}], "biomarkers": [], "biomarkers_protein": [], "biomarkers_gene": [], "biomarkers_lipids": [], "biomarkers_meta": [], "biomarkers_prot": [], "ftu_types": [], "references": []}, {"rowNumber": 213, "anatomical_structures": [{"id": "UBERON:0000948", "rdfs_label": "heart", "name": "heart"}, {"id": "UBERON:0002348", "rdfs_label": "epicardium", "name": "Epicardium"}, {"id": "FMA:83539", "rdfs_label": "", "name": "", "notes": ""}], "cell_types": [{"id": "CL:0000236", "rdfs_label": "B cell", "name": "B lymphocyte", "notes": ""}], "biomarkers": [], "biomarkers_protein": [], "biomarkers_gene": [], "biomarkers_lipids": [], "biomarkers_meta": [], "biomarkers_prot": [], "ftu_types": [], "references": []}, {"rowNumber": 214, "anatomical_structures": [{"id": "UBERON:0000948", "rdfs_label": "heart", "name": "heart"}, {"id": "UBERON:0002348", "rdfs_label": "epicardium", "name": "Epicardium"}, {"id": "FMA:83539", "rdfs_label": "", "name": "", "notes": ""}], "cell_types": [{"id": "CL:0000914", "rdfs_label": "immature NK T cell", "name": "NK/T lymphocyte", "notes": ""}], "biomarkers": [], "biomarkers_protein": [], "biomarkers_gene": [], "biomarkers_lipids": [], "biomarkers_meta": [], "biomarkers_prot": [], "ftu_types": [], "references": []}], "metadata": {"title": "Anatomical Structures, Cell Types and Biomarkers Table for Heart", "author_names": ["Shin Lin", "Marc Halushka", "Avinash Boppana"], "author_orcids": ["0000-0003-0118-0413", "0000-0002-7112-7389", "0000-0003-0834-8274"], "reviewer_names": ["Kalyanam Shivkumar", "Peter Hanna", "Ellen M. Quardokus"], "reviewer_orcids": ["0000-0002-4121-1766", "0000-0003-3092-5090", "0000-0001-7655-4833"], "general_publications": ["DOI: 10.1038/s41586-020-2797-4"], "data_doi": "https://doi.org/10.48539/HBM723.KFRP.582", "date": "December 15, 2023", "version": "v1.3"}, "csv": "\"Anatomical Structures, Cell Types and Biomarkers Table for Heart\",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\n,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nAuthor Name(s):,Shin Lin; Marc Halushka; Avinash Boppana,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nAuthor ORCID(s):,0000-0003-0118-0413; 0000-0002-7112-7389; 0000-0003-0834-8274,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nReviewer(s):,Kalyanam Shivkumar; Peter Hanna; Ellen M. Quardokus ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nReviewer ORCID(s):,0000-0002-4121-1766; 0000-0003-3092-5090; 0000-0001-7655-4833,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nGeneral Publication(s):,DOI: 10.1038/s41586-020-2797-4,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nData DOI:,https://doi.org/10.48539/HBM723.KFRP.582,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nDate:,\"December 15, 2023\",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nVersion Number:,v1.3,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nAS/1,AS/1/LABEL,AS/1/ID,AS/2,AS/2/LABEL,AS/2/ID,AS/3,AS/3/LABEL,AS/3/ID,AS/3/NOTE,CT/1,CT/1/LABEL,CT/1/ID,CT/1/NOTES,CT/2,CT/2/LABEL,CT/2/ID,CT/3,CT/3/LABEL,CT/3/ID,Combined gene Markers,BGene/1,BGene/1/LABEL,BGene/1/ID,BGene/1/NOTES,BGene/2,BGene/2/LABEL,BGene/2/ID,BGene/2/NOTES,BGene/3,BGene/3/LABEL,BGene/3/ID,BGene/3/NOTES,BGene/4,BGene/4/LABEL,BGene/4/ID,BGene/4/NOTES,FTU/1,FTU/1/LABEL,FTU/1/ID,REF/1,REF/1/DOI,REF/1/NOTES,REF/2,REF/2/DOI,REF/2/NOTES\r\nheart,heart,UBERON:0000948,right atrium,right cardiac atrium,UBERON:0002078,sinoatrial node,sinoatrial node,UBERON:0002351,,pacemaker cell,cardiac pacemaker cell of sinoatrial node,CL:1000477,,,,,,,,\"HCN4, Cx45\",HCN4,hyperpolarization activated cyclic nucleotide gated potassium channel 4,HGNC:16882,,GJC1,gap junction protein gamma 1,HGNC:4280,alias Cx45,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right atrium,right cardiac atrium,UBERON:0002078,sinoatrial nodal artery,Sinoatrial nodal branch of right coronary artery,FMA:3823,,endothelial cell,endothelial cell of artery,CL:1000413,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,\"arises from the right coronary artery in around 60% of people. In about 40% of cases, the sinoatrial artery is a branch of the left circumflex coronary artery\",,,\r\nheart,heart,UBERON:0000948,right atrium,right cardiac atrium,UBERON:0002078,sinoatrial nodal artery,Sinoatrial nodal branch of right coronary artery,FMA:3823,,smooth muscle cell,smooth muscle cell of the coronary artery,CL:0002592,,,,,,,,\"MYH11,TAGLN,ACTA2\",MYH11,myosin heavy chain 11,HGNC:7569,,TAGLN,transgelin,HGNC:11553,,ACTA2,\"actin alpha 2, smooth muscle\",HGNC:130,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right atrium,right cardiac atrium,UBERON:0002078,sinoatrial nodal artery,Sinoatrial nodal branch of right coronary artery,FMA:3823,,fibroblast,fibroblast,CL:0000057,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right atrium,right cardiac atrium,UBERON:0002078,myocardium,cardiac muscle of right atrium,UBERON:0003379,,cardiomyocyte,cardiac muscle cell,CL:0000746,,,,,,,,\"NPPA, MYL4, MYL7\",NPPA,natriuretic peptide A,HGNC:7939,,MYL4,myosin light chain 4,HGNC:7585,,MYL7,myosin light chain 7,HGNC:21719,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right atrium,right cardiac atrium,UBERON:0002078,myocardium,cardiac muscle of right atrium,UBERON:0003379,,fibroblast,cardiac atrium fibroblast,CL:2000067,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right atrium,right cardiac atrium,UBERON:0002078,myocardium,cardiac muscle of right atrium,UBERON:0003379,,macrophage,macrophage,CL:0000235,,,,,,,,\"CD14,C1QA,CD68, FOLR2\",CD14,CD14 molecule,HGNC:1628,,C1QA,complement C1q A chain,HGNC:1241,,CD68,CD68 molecule,HGNC:1693,,FOLR2,folate receptor beta,HGNC:3793,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right atrium,right cardiac atrium,UBERON:0002078,myocardium,cardiac muscle of right atrium,UBERON:0003379,,Schwann Cell,Schwann cell,CL:0002573,,,,,,,,\"PLP1, NRXN1, NRXN3\",PLP1,proteolipid protein 1,HGNC:9086,,NRXN1,neurexin 1,HGNC:8008,,NRXN3,neurexin 3,HGNC:8010,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right atrium,right cardiac atrium,UBERON:0002078,myocardium,cardiac muscle tissue of interventricular septum,UBERON:0003383,,mast cell,mast cell,CL:0000097,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right atrium,right cardiac atrium,UBERON:0002078,myocardium,cardiac muscle tissue of interventricular septum,UBERON:0003383,,lymphatic endothelial cell,endothelial cell of lymphatic vessel,CL:0002138,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right atrium,right cardiac atrium,UBERON:0002078,myocardium,cardiac muscle tissue of interventricular septum,UBERON:0003383,,B lymphocyte,B cell,CL:0000236,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right atrium,right cardiac atrium,UBERON:0002078,myocardium,cardiac muscle tissue of interventricular septum,UBERON:0003383,,NK/T lymphocyte,immature NK T cell,CL:0000914,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right atrium,right cardiac atrium,UBERON:0002078,myocardium,cardiac muscle tissue of interventricular septum,UBERON:0003383,,Innate lymphoid cell,Innate lymphoid cell,CL:0001065,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right atrium,right cardiac atrium,UBERON:0002078,myocardium,cardiac muscle tissue of interventricular septum,UBERON:0003383,,endocardial cell,endocardial cell,CL:0002350,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right atrium,right cardiac atrium,UBERON:0002078,vasculature,vasculature,UBERON:0002049,,endothelial cell,cardiac endothelial cell,CL:0010008,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right atrium,right cardiac atrium,UBERON:0002078,vasculature,vasculature,UBERON:0002049,,smooth muscle cell,vascular associated smooth muscle cell,CL:0000359,,,,,,,,\"MYH11,TAGLN,ACTA2\",MYH11,myosin heavy chain 11,HGNC:7569,,TAGLN,transgelin,HGNC:11553,,ACTA2,\"actin alpha 2, smooth muscle\",HGNC:130,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right atrium,right cardiac atrium,UBERON:0002078,vasculature,vasculature,UBERON:0002049,,fibroblast,cardiac atrium fibroblast,CL:2000067,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right atrium,right cardiac atrium,UBERON:0002078,capillary,capillary,UBERON:0001982,,pericyte,pericyte,CL:0000669,,,,,,,,\"RGS5, ABCC9, KCNJ8\",RGS5,regulator of G protein signaling 5,HGNC:10001,,ABCC9,ATP binding cassette subfamily C member 9,HGNC:60,,KCNJ8,potassium inwardly rectifying channel subfamily J member 8,HGNC:6269,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right atrium,right cardiac atrium,UBERON:0002078,venule,venule,UBERON:0001979,,pericyte,pericyte,CL:0000669,,,,,,,,\"RGS5, ABCC9, KCNJ8\",RGS5,regulator of G protein signaling 5,HGNC:10001,,ABCC9,ATP binding cassette subfamily C member 9,HGNC:60,,KCNJ8,potassium inwardly rectifying channel subfamily J member 8,HGNC:6269,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right atrium,right cardiac atrium,UBERON:0002078,anterior cardiac veins,Anterior cardiac vein,FMA:76767,,endothelial cell,endothelial cell of artery,CL:1000413,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right atrium,right cardiac atrium,UBERON:0002078,anterior cardiac veins,Anterior cardiac vein,FMA:76767,,smooth muscle cell,smooth muscle cell of the coronary artery,CL:0002592,,,,,,,,\"MYH11,TAGLN,ACTA2\",MYH11,myosin heavy chain 11,HGNC:7569,,TAGLN,transgelin,HGNC:11553,,ACTA2,\"actin alpha 2, smooth muscle\",HGNC:130,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right atrium,right cardiac atrium,UBERON:0002078,anterior cardiac veins,Anterior cardiac vein,FMA:76767,,fibroblast,fibroblast,CL:0000057,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right atrium,right cardiac atrium,UBERON:0002078,myocardium,Myocardium of right atrium,FMA:83531,,telocyte (interstitial like cell of cajal),telocyte,CL:0017004,,,,,,,,\"CD34,vimentin\",CD34,CD34 molecule,HGNC:1662,,VIM,vimentin,HGNC:12692,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right atrium,right cardiac atrium,UBERON:0002078,myocardium,Myocardium of right atrium,FMA:83531,,lymphocyte,lymphocyte,CL:0000542,,,,,,,,\"CD8A,NKG7,LCK\",CD8A,CD8 subunit alpha,HGNC:1706,,NKG7,natural killer cell granule protein 7,HGNC:7830,,LCK,\"LCK proto-oncogene, Src family tyrosine kinase\",HGNC:6524,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right atrium,right cardiac atrium,UBERON:0002078,myocardium,Myocardium of right atrium,FMA:83531,,dendritic cell,\"dendritic cell, human\",CL:0001056,,,,,,,,\"CD11b, CD11c, CD103, CD205\",ITGAM,integrin subunit alpha M,HGNC:6149,alias CD11b,ITGAX,integrin subunit alpha X,HGNC:6152,alias CD11c,ITGAE,integrin subunit alpha E,HGNC:6147,alias CD103,LY75,lymphocyte antigen 75,HGNC:6729,alias CD205,,,,,,,,,\r\nheart,heart,UBERON:0000948,right atrium,right cardiac atrium,UBERON:0002078,myocardium,Myocardium of right atrium,FMA:83531,,adipocyte,fat cell,CL:0000136,,,,,,,,\"GPAM, LEP, FASN\",GPAM,\"glycerol-3-phosphate acyltransferase, mitochondrial\",HGNC:24865,,LEP,leptin,HGNC:6553,,FASN,fatty acid synthase,HGNC:3594,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,atrioventricular junction,atrioventricular region,UBERON:0011820,left circumflex artery,circumflex branch of left coronary artery,UBERON:0035422,,endothelial cell,endothelial cell of artery,CL:1000413,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,atrioventricular junction,atrioventricular region,UBERON:0011820,left circumflex artery,circumflex branch of left coronary artery,UBERON:0035422,,smooth muscle cell,smooth muscle cell of the coronary artery,CL:0002592,,,,,,,,\"MYH11,TAGLN,ACTA2\",MYH11,myosin heavy chain 11,HGNC:7569,,TAGLN,transgelin,HGNC:11553,,ACTA2,\"actin alpha 2, smooth muscle\",HGNC:130,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,atrioventricular junction,atrioventricular region,UBERON:0011820,left circumflex artery,circumflex branch of left coronary artery,UBERON:0035422,,fibroblast,fibroblast,CL:0000057,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,atrioventricular junction,atrioventricular region,UBERON:0011820,atrioventicular nodal artery,Atrioventricular node branch of right coronary artery,FMA:3851,,endothelial cell,endothelial cell of artery,CL:1000413,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,atrioventricular junction,atrioventricular region,UBERON:0011820,atrioventicular nodal artery,Atrioventricular node branch of right coronary artery,FMA:3851,,smooth muscle cell,smooth muscle cell of the coronary artery,CL:0002592,,,,,,,,\"MYH11,TAGLN,ACTA2\",MYH11,myosin heavy chain 11,HGNC:7569,,TAGLN,transgelin,HGNC:11553,,ACTA2,\"actin alpha 2, smooth muscle\",HGNC:130,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,atrioventricular junction,atrioventricular region,UBERON:0011820,atrioventicular nodal artery,Atrioventricular node branch of right coronary artery,FMA:3851,,fibroblast,fibroblast,CL:0000057,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,atrioventricular junction,atrioventricular region,UBERON:0011820,coronary sinus,coronary sinus,UBERON:0005438,,endothelial cell,endothelial cell of artery,CL:1000413,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,atrioventricular junction,atrioventricular region,UBERON:0011820,coronary sinus,coronary sinus,UBERON:0005438,,smooth muscle cell,vascular associated smooth muscle cell,CL:0000359,,,,,,,,\"MYH11,TAGLN,ACTA2\",MYH11,myosin heavy chain 11,HGNC:7569,,TAGLN,transgelin,HGNC:11553,,ACTA2,\"actin alpha 2, smooth muscle\",HGNC:130,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,atrioventricular junction,atrioventricular region,UBERON:0011820,coronary sinus,coronary sinus,UBERON:0005438,,fibroblast,fibroblast,CL:0000057,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,atrioventricular junction,atrioventricular region,UBERON:0011820,atrioventricular node,atrioventricular node,UBERON:0002352,,pacemaker cell,cardiac pacemaker cell of sinoatrial node,CL:1000477,,,,,,,,\"HCN4, Cx45\",HCN4,hyperpolarization activated cyclic nucleotide gated potassium channel 4,HGNC:16882,,GJC1,gap junction protein gamma 1,HGNC:4280,alias Cx45,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,atrioventricular junction,atrioventricular region,UBERON:0011820,atrioventricular node,atrioventricular node,UBERON:0002352,,adipocyte,fat cell,CL:0000136,,,,,,,,\"GPAM, LEP, FASN\",GPAM,\"glycerol-3-phosphate acyltransferase, mitochondrial\",HGNC:24865,,LEP,leptin,HGNC:6553,,FASN,fatty acid synthase,HGNC:3594,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,atrioventricular junction,atrioventricular region,UBERON:0011820,right coronary artery,right coronary artery,UBERON:0001625,,endothelial cell,endothelial cell of artery,CL:1000413,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,atrioventricular junction,atrioventricular region,UBERON:0011820,right coronary artery,right coronary artery,UBERON:0001625,,smooth muscle cell,smooth muscle cell of the coronary artery,CL:0002592,,,,,,,,\"MYH11,TAGLN,ACTA2\",MYH11,myosin heavy chain 11,HGNC:7569,,TAGLN,transgelin,HGNC:11553,,ACTA2,\"actin alpha 2, smooth muscle\",HGNC:130,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,atrioventricular junction,atrioventricular region,UBERON:0011820,right coronary artery,right coronary artery,UBERON:0001625,,fibroblast,fibroblast,CL:0000057,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,atrioventricular junction,atrioventricular region,UBERON:0011820,small cardiac vein,small cardiac vein,UBERON:0035374,,endothelial cell,endothelial cell of artery,CL:1000413,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,atrioventricular junction,atrioventricular region,UBERON:0011820,small cardiac vein,small cardiac vein,UBERON:0035374,,smooth muscle cell,smooth muscle cell of the coronary artery,CL:0002592,,,,,,,,\"MYH11,TAGLN,ACTA2\",MYH11,myosin heavy chain 11,HGNC:7569,,TAGLN,transgelin,HGNC:11553,,ACTA2,\"actin alpha 2, smooth muscle\",HGNC:130,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,atrioventricular junction,atrioventricular region,UBERON:0011820,small cardiac vein,small cardiac vein,UBERON:0035374,,fibroblast,fibroblast,CL:0000057,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,myocardium,Myocardium of left atrium,FMA:83532,,cardiomyocyte,cardiac muscle cell,CL:0000746,,,,,,,,\"NPPA, MYL4, MYL7\",NPPA,natriuretic peptide A,HGNC:12403,,MYL4,myosin light chain 4,HGNC:7585,,MYL7,myosin light chain 7,HGNC:21719,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,myocardium,Myocardium of left atrium,FMA:83532,,pacemaker cell,cardiac pacemaker cell of sinoatrial node,CL:1000477,,,,,,,,\"HCN4, Cx45\",HCN4,hyperpolarization activated cyclic nucleotide gated potassium channel 4,HGNC:16882,,GJC1,gap junction protein gamma 1,HGNC:4280,alias Cx45,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,myocardium,Myocardium of left atrium,FMA:83532,,fibroblast,cardiac atrium fibroblast,CL:2000067,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,myocardium,Myocardium of left atrium,FMA:83532,,macrophage,macrophage,CL:0000235,,,,,,,,\"CD14,C1QA,CD68, FOLR2\",CD14,CD14 molecule,HGNC:1628,,C1QA,complement C1q A chain,HGNC:1241,,CD68,CD68 molecule,HGNC:1693,,FOLR2,folate receptor beta,HGNC:3793,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,myocardium,Myocardium of left atrium,FMA:83532,,Schwann Cell,Schwann cell,CL:0002573,,,,,,,,\"PLP1, NRXN1, NRXN3\",PLP1,proteolipid protein 1,HGNC:9086,,NRXN1,neurexin 1,HGNC:8008,,NRXN3,neurexin 3,HGNC:8010,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,myocardium,Myocardium of interventricular septum,FMA:83539,,mast cell,mast cell,CL:0000097,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,myocardium,Myocardium of interventricular septum,FMA:83539,,lymphatic endothelial cell,endothelial cell of lymphatic vessel,CL:0002138,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,myocardium,Myocardium of interventricular septum,FMA:83539,,B lymphocyte,B cell,CL:0000236,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,myocardium,Myocardium of interventricular septum,FMA:83539,,NK/T lymphocyte,immature NK T cell,CL:0000914,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,myocardium,Myocardium of interventricular septum,FMA:83539,,ILC,innate lymphoid cell,CL:0001065,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,myocardium,Myocardium of interventricular septum,FMA:83539,,endocardial,endocardial cell,CL:0002350,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,vasculature,vasculature,UBERON:0002049,,endothelial cell,blood vessel endothelial cell,CL:0000071,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,vasculature,vasculature,UBERON:0002049,,smooth muscle cell,vascular associated smooth muscle cell,CL:0000359,,,,,,,,\"MYH11,TAGLN,ACTA2\",MYH11,myosin heavy chain 11,HGNC:7569,,TAGLN,transgelin,HGNC:11553,,ACTA2,\"actin alpha 2, smooth muscle\",HGNC:130,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,vasculature,vasculature,UBERON:0002049,,fibroblast,cardiac atrium fibroblast,CL:2000067,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,vasculature,capillary,UBERON:0001982,,pericyte,pericyte,CL:0000669,,,,,,,,\"RGS5, ABCC9, KCNJ8\",RGS5,regulator of G protein signaling 5,HGNC:10001,,ABCC9,ATP binding cassette subfamily C member 9,HGNC:60,,KCNJ8,potassium inwardly rectifying channel subfamily J member 8,HGNC:6269,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,vasculature,capillary,UBERON:0001982,,capillary endothelial cell,capillary endothelial cell,CL:0002144,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:10001,,ABCC9,ATP binding cassette subfamily C member 9,HGNC:60,,KCNJ8,potassium inwardly rectifying channel subfamily J member 8,HGNC:6269,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,vasculature,venule,UBERON:0001979,,pericyte,pericyte,CL:0000669,,,,,,,,\"RGS5, ABCC9, KCNJ8\",RGS5,regulator of G protein signaling 5,HGNC:10001,,ABCC9,ATP binding cassette subfamily C member 9,HGNC:60,,KCNJ8,potassium inwardly rectifying channel subfamily J member 8,HGNC:6269,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,left inferior pulmonary vein,left inferior pulmonary vein,FMA:49913,,endothelial cell,blood vessel endothelial cell,CL:0000071,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,left inferior pulmonary vein,left inferior pulmonary vein,FMA:49913,,smooth muscle cell,vascular associated smooth muscle cell,CL:0000359,,,,,,,,\"MYH11,TAGLN,ACTA2\",MYH11,myosin heavy chain 11,HGNC:7569,,TAGLN,transgelin,HGNC:11553,,ACTA2,\"actin alpha 2, smooth muscle\",HGNC:130,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,left inferior pulmonary vein,left inferior pulmonary vein,FMA:49913,,fibroblast,cardiac atrium fibroblast,CL:2000067,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,left superior pulmonary vein,left superior pulmonary vein,FMA:49916,,endothelial cell,blood vessel endothelial cell,CL:0000071,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,left superior pulmonary vein,left superior pulmonary vein,FMA:49916,,smooth muscle cell,vascular associated smooth muscle cell,CL:0000359,,,,,,,,\"MYH11,TAGLN,ACTA2\",MYH11,myosin heavy chain 11,HGNC:7569,,TAGLN,transgelin,HGNC:11553,,ACTA2,\"actin alpha 2, smooth muscle\",HGNC:130,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,left superior pulmonary vein,left superior pulmonary vein,FMA:49916,,fibroblast,cardiac atrium fibroblast,CL:2000067,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,right inferior pulmonary vein,right inferior pulmonary vein,FMA:49911,,endothelial cell,blood vessel endothelial cell,CL:0000071,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,right inferior pulmonary vein,right inferior pulmonary vein,FMA:49911,,smooth muscle cell,vascular associated smooth muscle cell,CL:0000359,,,,,,,,\"MYH11,TAGLN,ACTA2\",MYH11,myosin heavy chain 11,HGNC:7569,,TAGLN,transgelin,HGNC:11553,,ACTA2,\"actin alpha 2, smooth muscle\",HGNC:130,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,right inferior pulmonary vein,right inferior pulmonary vein,FMA:49911,,fibroblast,cardiac atrium fibroblast,CL:2000067,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,right superior pulmonary vein,right superior pulmonary vein,FMA:49914,,endothelial cell,blood vessel endothelial cell,CL:0000071,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,right superior pulmonary vein,right superior pulmonary vein,FMA:49914,,smooth muscle cell,vascular associated smooth muscle cell,CL:0000359,,,,,,,,\"MYH11,TAGLN,ACTA2\",MYH11,myosin heavy chain 11,HGNC:7569,,TAGLN,transgelin,HGNC:11553,,ACTA2,\"actin alpha 2, smooth muscle\",HGNC:130,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,right superior pulmonary vein,right superior pulmonary vein,FMA:49914,,fibroblast,cardiac atrium fibroblast,CL:2000067,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,oblique vein of the left atrium,oblique vein of the left atrium,FMA:4715,,endothelial cell,blood vessel endothelial cell,CL:0000071,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,oblique vein of the left atrium,oblique vein of the left atrium,FMA:4715,,smooth muscle cell,vascular associated smooth muscle cell,CL:0000359,,,,,,,,\"MYH11,TAGLN,ACTA2\",MYH11,myosin heavy chain 11,HGNC:7569,,TAGLN,transgelin,HGNC:11553,,ACTA2,\"actin alpha 2, smooth muscle\",HGNC:130,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,oblique vein of the left atrium,oblique vein of the left atrium,FMA:4715,,fibroblast,cardiac atrium fibroblast,CL:2000067,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,myocardium,Myocardium of left atrium,FMA:83532,,telocyte (interstitial like cell of cajal),telocyte,CL:0017004,,,,,,,,\"CD34,vimentin\",CD34,CD34 molecule,HGNC:1662,,VIM,vimentin,HGNC:12692,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,myocardium,Myocardium of left atrium,FMA:83532,,lymphocyte,lymphocyte,CL:0000542,,,,,,,,\"CD8A,NKG7,LCK\",CD8A,CD8 subunit alpha,HGNC:1706,,NKG7,natural killer cell granule protein 7,HGNC:7830,,LCK,\"LCK proto-oncogene, Src family tyrosine kinase\",HGNC:6524,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,myocardium,Myocardium of left atrium,FMA:83532,,dendritic cell,\"dendritic cell, human\",CL:0001056,,,,,,,,\"CD11b, CD11c, CD103, CD205\",ITGAM,integrin subunit alpha M,HGNC:6149,alias CD11b,ITGAX,integrin subunit alpha X,HGNC:6152,alias CD11c,ITGAE,integrin subunit alpha E,HGNC:6147,alias CD103,LY75,lymphocyte antigen 75,HGNC:6729,alias CD205,,,,,,,,,\r\nheart,heart,UBERON:0000948,left atrium,left cardiac atrium,UBERON:0002079,myocardium,Myocardium of left atrium,FMA:83532,,adipocyte,fat cell,CL:0000136,,,,,,,,\"GPAM, LEP, FASN\",GPAM,\"glycerol-3-phosphate acyltransferase, mitochondrial\",HGNC:24865,,LEP,leptin,HGNC:6553,,FASN,fatty acid synthase,HGNC:3594,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,myocardium,left ventricle myocardium,UBERON:0006566,,cardiomyocyte,cardiac muscle cell,CL:0000746,,,,,,,,\"TTN, MYH7, MYL2, FHL2\",TTN,titin,HGNC:12403,,MYH7,myosin heavy chain 7,HGNC:7577,,MYL2,myosin light chain 2,HGNC:7583,,FHL2,four and a half LIM domains 2,HGNC:3703,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,myocardium,left ventricle myocardium,UBERON:0006566,,Purkinje fiber cell,Purkinje myocyte,CL:0002068,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,myocardium,left ventricle myocardium,UBERON:0006566,,fibroblast,cardiac ventricle fibroblast,CL:2000066,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,myocardium,left ventricle myocardium,UBERON:0006566,,macrophage,macrophage,CL:0000235,,,,,,,,\"CD14,C1QA,CD68, FOLR2\",CD14,CD14 molecule,HGNC:1628,,C1QA,complement C1q A chain,HGNC:1241,,CD68,CD68 molecule,HGNC:1693,,FOLR2,folate receptor beta,HGNC:3793,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,vasculature,vasculature,UBERON:0002049,,endothelial cell,blood vessel endothelial cell,CL:0000071,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,vasculature,vasculature,UBERON:0002049,,smooth muscle cell,vascular associated smooth muscle cell,CL:0000359,,,,,,,,\"MYH11,TAGLN,ACTA2\",MYH11,myosin heavy chain 11,HGNC:7569,,TAGLN,transgelin,HGNC:11553,,ACTA2,\"actin alpha 2, smooth muscle\",HGNC:130,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,vasculature,vasculature,UBERON:0002049,,fibroblast,cardiac ventricle fibroblast,CL:2000066,,,,,,,,\"PDGFRA, GSN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,vasculature,capillary,UBERON:0001982,,capillary endothelial cell,capillary endothelial cell,CL:0002144,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:10001,,ABCC9,ATP binding cassette subfamily C member 9,HGNC:60,,KCNJ8,potassium inwardly rectifying channel subfamily J member 8,HGNC:6269,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,vasculature,capillary,UBERON:0001982,,pericyte,pericyte,CL:0000669,,,,,,,,\"RGS5, ABCC9, KCNJ8\",RGS5,regulator of G protein signaling 5,HGNC:10001,,ABCC9,ATP binding cassette subfamily C member 9,HGNC:60,,KCNJ8,potassium inwardly rectifying channel subfamily J member 8,HGNC:6269,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,vasculature,venule,UBERON:0001979,,pericyte,pericyte,CL:0000669,,,,,,,,\"RGS5, ABCC9, KCNJ8\",RGS5,regulator of G protein signaling 5,HGNC:10001,,ABCC9,ATP binding cassette subfamily C member 9,HGNC:60,,KCNJ8,potassium inwardly rectifying channel subfamily J member 8,HGNC:6269,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,myocardium,left ventricle myocardium,UBERON:0006566,,telocyte (interstitial like cell of cajal),telocyte,CL:0017004,,,,,,,,\"CD34,vimentin\",CD34,CD34 molecule,HGNC:1662,,VIM,vimentin,HGNC:12692,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,myocardium,left ventricle myocardium,UBERON:0006566,,dendritic cell,\"dendritic cell, human\",CL:0001056,,,,,,,,\"CD11b, CD11c, CD103, CD205\",ITGAM,integrin subunit alpha M,HGNC:6149,alias CD11b,ITGAX,integrin subunit alpha X,HGNC:6152,alias CD11c,ITGAE,integrin subunit alpha E,HGNC:6147,alias CD103,LY75,lymphocyte antigen 75,HGNC:6729,alias CD205,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,myocardium,left ventricle myocardium,UBERON:0006566,,adipocyte,fat cell,CL:0000136,,,,,,,,\"GPAM, LEP, FASN\",GPAM,\"glycerol-3-phosphate acyltransferase, mitochondrial\",HGNC:24865,,LEP,leptin,HGNC:6553,,FASN,fatty acid synthase,HGNC:3594,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,myocardium,left ventricle myocardium,UBERON:0006566,,mast cell,mast cell ,CL:0000097,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,myocardium,left ventricle myocardium,UBERON:0006566,,lymphatic endothelial cell,endothelial cell of lymphatic vessel,CL:0002138,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,myocardium,left ventricle myocardium,UBERON:0006566,,B lymphocyte,B cell,CL:0000236,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,myocardium,left ventricle myocardium,UBERON:0006566,,NK/T lymphocyte,immature NK T cell,CL:0000914,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,myocardium,left ventricle myocardium,UBERON:0006566,,ILC,innate lymphoid cell,CL:0001065,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,myocardium,left ventricle myocardium,UBERON:0006566,,endocardial,endocardial cell,CL:0002350,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,left diagonal branch of the left anterior descending artery,Diagonal branch of anterior descending branch of left coronary artery,FMA:3860,,endothelial cell,endothelial cell of artery,CL:1000413,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,left diagonal branch of the left anterior descending artery,Diagonal branch of anterior descending branch of left coronary artery,FMA:3860,,smooth muscle cell,blood vessel endothelial cell,CL:0000071,,,,,,,,\"MYH11,TAGLN,ACTA2\",MYH11,myosin heavy chain 11,HGNC:7569,,TAGLN,transgelin,HGNC:11553,,ACTA2,\"actin alpha 2, smooth muscle\",HGNC:130,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,left diagonal branch of the left anterior descending artery,Diagonal branch of anterior descending branch of left coronary artery,FMA:3860,,fibroblast,fibroblast,CL:0000057,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,left obtuse marginal branch of the left coronary artery,Left marginal artery,FMA:3902,,endothelial cell,endothelial cell of artery,CL:1000413,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,left obtuse marginal branch of the left coronary artery,Left marginal artery,FMA:3902,,smooth muscle cell,blood vessel endothelial cell,CL:0000071,,,,,,,,\"MYH11,TAGLN,ACTA2\",MYH11,myosin heavy chain 11,HGNC:7569,,TAGLN,transgelin,HGNC:11553,,ACTA2,\"actin alpha 2, smooth muscle\",HGNC:130,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,left obtuse marginal branch of the left coronary artery,Left marginal artery,FMA:3902,,fibroblast,fibroblast,CL:0000057,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,posterior left ventricular branch of the right coronary artery,Posterior ventricular branch of right coronary artery,FMA:3835,,endothelial cell,endothelial cell of artery,CL:1000413,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,posterior left ventricular branch of the right coronary artery,Posterior ventricular branch of right coronary artery,FMA:3835,,smooth muscle cell,blood vessel endothelial cell,CL:0000071,,,,,,,,\"MYH11,TAGLN,ACTA2\",MYH11,myosin heavy chain 11,HGNC:7569,,TAGLN,transgelin,HGNC:11553,,ACTA2,\"actin alpha 2, smooth muscle\",HGNC:130,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,posterior left ventricular branch of the right coronary artery,Posterior ventricular branch of right coronary artery,FMA:3835,,fibroblast,fibroblast,CL:0000057,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,left marginal vein,left marginal vein,FMA:4708,,endothelial cell,endothelial cell of artery,CL:1000413,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,left marginal vein,left marginal vein,FMA:4708,,smooth muscle cell,blood vessel endothelial cell,CL:0000071,,,,,,,,\"MYH11,TAGLN,ACTA2\",MYH11,myosin heavy chain 11,HGNC:7569,,TAGLN,transgelin,HGNC:11553,,ACTA2,\"actin alpha 2, smooth muscle\",HGNC:130,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,left marginal vein,left marginal vein,FMA:4708,,fibroblast,fibroblast,CL:0000057,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,posterior vein of the left ventricle,Posterior vein of left ventricle,FMA:4712,,endothelial cell,endothelial cell of artery,CL:1000413,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,posterior vein of the left ventricle,Posterior vein of left ventricle,FMA:4712,,smooth muscle cell,blood vessel endothelial cell,CL:0000071,,,,,,,,\"MYH11,TAGLN,ACTA2\",MYH11,myosin heavy chain 11,HGNC:7569,,TAGLN,transgelin,HGNC:11553,,ACTA2,\"actin alpha 2, smooth muscle\",HGNC:130,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,left ventricle,heart left ventricle,UBERON:0002084,posterior vein of the left ventricle,Posterior vein of left ventricle,FMA:4712,,fibroblast,fibroblast,CL:0000057,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,left anterior descending artery,left anterior descending artery,FMA:3862,,endothelial cell,endothelial cell of artery,CL:1000413,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,left anterior descending artery,left anterior descending artery,FMA:3862,,smooth muscle cell,blood vessel endothelial cell,CL:0000071,,,,,,,,\"MYH11,TAGLN,ACTA2\",MYH11,myosin heavy chain 11,HGNC:7569,,TAGLN,transgelin,HGNC:11553,,ACTA2,\"actin alpha 2, smooth muscle\",HGNC:130,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,left anterior descending artery,left anterior descending artery,FMA:3862,,fibroblast,fibroblast,CL:0000057,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,posterior descending artery,posterior descending artery,FMA:3840,,endothelial cell,endothelial cell of artery,CL:1000413,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,posterior descending artery,posterior descending artery,FMA:3840,,smooth muscle cell,blood vessel endothelial cell,CL:0000071,,,,,,,,\"MYH11,TAGLN,ACTA2\",MYH11,myosin heavy chain 11,HGNC:7569,,TAGLN,transgelin,HGNC:11553,,ACTA2,\"actin alpha 2, smooth muscle\",HGNC:130,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,posterior descending artery,posterior descending artery,FMA:3840,,fibroblast,fibroblast,CL:0000057,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,septal perforating arteries,,,Need to add blood vasculature table & ubeorn,endothelial cell,endothelial cell of artery,CL:1000413,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,septal perforating arteries,,,Need to add blood vasculature table & ubeorn,smooth muscle cell,blood vessel endothelial cell,CL:0000071,,,,,,,,\"MYH11,TAGLN,ACTA2\",MYH11,myosin heavy chain 11,HGNC:7569,,TAGLN,transgelin,HGNC:11553,,ACTA2,\"actin alpha 2, smooth muscle\",HGNC:130,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,septal perforating arteries,,,Need to add blood vasculature table & ubeorn,fibroblast,fibroblast,CL:0000057,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,great cardiac vein,great vein of heart,UBERON:0006958,,endothelial cell,endothelial cell of artery,CL:1000413,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,great cardiac vein,great vein of heart,UBERON:0006958,,smooth muscle cell,blood vessel endothelial cell,CL:0000071,,,,,,,,\"MYH11,TAGLN,ACTA2\",MYH11,myosin heavy chain 11,HGNC:7569,,TAGLN,transgelin,HGNC:11553,,ACTA2,\"actin alpha 2, smooth muscle\",HGNC:130,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,great cardiac vein,great vein of heart,UBERON:0006958,,fibroblast,fibroblast,CL:0000057,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,middle cardiac vein,middle cardiac vein,UBERON:0009687,,endothelial cell,endothelial cell of artery,CL:1000413,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,middle cardiac vein,middle cardiac vein,UBERON:0009687,,smooth muscle cell,blood vessel endothelial cell,CL:0000071,,,,,,,,\"MYH11,TAGLN,ACTA2\",MYH11,myosin heavy chain 11,HGNC:7569,,TAGLN,transgelin,HGNC:11553,,ACTA2,\"actin alpha 2, smooth muscle\",HGNC:130,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,middle cardiac vein,middle cardiac vein,UBERON:0009687,,fibroblast,fibroblast,CL:0000057,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,,,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,vasculature,capillary,UBERON:0001982,,pericyte,pericyte,CL:0000669,,,,,,,,\"RGS5, ABCC9, KCNJ8\",RGS5,regulator of G protein signaling 5,HGNC:10001,,ABCC9,ATP binding cassette subfamily C member 9,HGNC:60,,KCNJ8,potassium inwardly rectifying channel subfamily J member 8,HGNC:6269,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,vasculature,capillary,UBERON:0001982,,capillary endothelial cell,capillary endothelial cell,CL:0002144,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:10001,,ABCC9,ATP binding cassette subfamily C member 9,HGNC:60,,KCNJ8,potassium inwardly rectifying channel subfamily J member 8,HGNC:6269,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,vasculature,venule,UBERON:0001979,,pericyte,pericyte,CL:0000669,,,,,,,,\"RGS5, ABCC9, KCNJ8\",RGS5,regulator of G protein signaling 5,HGNC:10001,,ABCC9,ATP binding cassette subfamily C member 9,HGNC:60,,KCNJ8,potassium inwardly rectifying channel subfamily J member 8,HGNC:6269,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,atrioventricular bundle,bundle of His,UBERON:0002353,,pacemaker cardiomyocyte,cardiac pacemaker cell of sinoatrial node,CL:1000477,,,,,,,,\"HCN4, Cx45\",HCN4,hyperpolarization activated cyclic nucleotide gated potassium channel 4,HGNC:16882,,GJC1,gap junction protein gamma 1,HGNC:4280,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,myocardium,Myocardium of interventricular septum,FMA:83539,,cardiomyocyte,cardiac muscle cell,CL:0000746,,,,,,,,\"TTN, MYH7, MYL2, FHL2\",TTN,titin,HGNC:12403,,MYH7,myosin heavy chain 7,HGNC:7577,,MYL2,myosin light chain 2,HGNC:7583,,FHL2,four and a half LIM domains 2,HGNC:3703,,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,myocardium,Myocardium of interventricular septum,FMA:83539,,Purkinje fiber cell,Purkinje myocyte,CL:0002068,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,myocardium,Myocardium of interventricular septum,FMA:83539,,fibroblast,fibroblast,CL:0000057,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,myocardium,Myocardium of interventricular septum,FMA:83539,,macrophage,macrophage,CL:0000235,,,,,,,,\"CD14,C1QA,CD68, FOLR2\",CD14,CD14 molecule,HGNC:1628,,C1QA,complement C1q A chain,HGNC:1241,,CD68,CD68 molecule,HGNC:1693,,FOLR2,folate receptor beta,HGNC:3793,,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,myocardium,Myocardium of interventricular septum,FMA:83539,,telocyte (interstitial like cell of cajal),telocyte,CL:0017004,,,,,,,,\"CD34,vimentin\",CD34,CD34 molecule,HGNC:1662,,VIM,vimentin,HGNC:12692,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,myocardium,Myocardium of interventricular septum,FMA:83539,,lymphocyte,lymphocyte,CL:0000542,,,,,,,,\"CD8A,NKG7,LCK\",CD8A,CD8 subunit alpha,HGNC:1706,,NKG7,natural killer cell granule protein 7,HGNC:7830,,LCK,\"LCK proto-oncogene, Src family tyrosine kinase\",HGNC:6524,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,myocardium,Myocardium of interventricular septum,FMA:83539,,dendritic cell,\"dendritic cell, human\",CL:0001056,,,,,,,,\"CD11b, CD11c, CD103, CD205\",ITGAM,integrin subunit alpha M,HGNC:6149,alias CD11b,ITGAX,integrin subunit alpha X,HGNC:6152,alias CD11c,ITGAE,integrin subunit alpha E,HGNC:6147,alias CD103,LY75,lymphocyte antigen 75,HGNC:6729,alias CD205,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,myocardium,Myocardium of interventricular septum,FMA:83539,,adipocyte,fat cell,CL:0000136,,,,,,,,\"GPAM, LEP, FASN\",GPAM,\"glycerol-3-phosphate acyltransferase, mitochondrial\",HGNC:24865,,LEP,leptin,HGNC:6553,,FASN,fatty acid synthase,HGNC:3594,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,myocardium,Myocardium of interventricular septum,FMA:83539,,mast cell,mast cell ,CL:0000097,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,myocardium,Myocardium of interventricular septum,FMA:83539,,lymphatic endothelial cell,endothelial cell of lymphatic vessel,CL:0002138,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,myocardium,Myocardium of interventricular septum,FMA:83539,,B lymphocyte,B cell,CL:0000236,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,myocardium,Myocardium of interventricular septum,FMA:83539,,NK/T lymphocyte,immature NK T cell,CL:0000914,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,myocardium,Myocardium of interventricular septum,FMA:83539,,ILC,innate lymphoid cell,CL:0001065,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,septum,interventricular septum,UBERON:0002094,myocardium,Myocardium of interventricular septum,FMA:83539,,endocardial,endocardial cell,CL:0002350,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,myocardium,right ventricle myocardium,UBERON:0006567,,mast cell,mast cell ,CL:0000097,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,myocardium,right ventricle myocardium,UBERON:0006567,,lymphatic endothelial cell,endothelial cell of lymphatic vessel,CL:0002138,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,myocardium,right ventricle myocardium,UBERON:0006567,,B lymphocyte,B cell,CL:0000236,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,myocardium,right ventricle myocardium,UBERON:0006567,,NK/T lymphocyte,immature NK T cell,CL:0000914,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,myocardium,right ventricle myocardium,UBERON:0006567,,ILC,innate lymphoid cell,CL:0001065,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,myocardium,right ventricle myocardium,UBERON:0006567,,endocardial,endocardial cell,CL:0002350,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,myocardium,right ventricle myocardium,UBERON:0006567,,cardiomyocyte,cardiac muscle cell,CL:0000746,,,,,,,,\"TTN, MYH7, MYL2, FHL2\",TTN,titin,HGNC:12403,,MYH7,myosin heavy chain 7,HGNC:7577,,MYL2,myosin light chain 2,HGNC:7583,,FHL2,four and a half LIM domains 2,HGNC:3703,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,myocardium,right ventricle myocardium,UBERON:0006567,,Purkinje fiber cell,Purkinje myocyte,CL:0002068,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,myocardium,right ventricle myocardium,UBERON:0006567,,fibroblast,cardiac ventricle fibroblast,CL:2000066,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,myocardium,right ventricle myocardium,UBERON:0006567,,macrophage,macrophage,CL:0000235,,,,,,,,\"CD14,C1QA,CD68, FOLR2\",CD14,CD14 molecule,HGNC:1628,,C1QA,complement C1q A chain,HGNC:1241,,CD68,CD68 molecule,HGNC:1693,,FOLR2,folate receptor beta,HGNC:3793,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,conus artery,conus artery,FMA:15736,,endothelial cell,endothelial cell of artery,CL:1000413,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,conus artery,conus artery,FMA:15736,,smooth muscle cell,blood vessel endothelial cell,CL:0000071,,,,,,,,\"MYH11,TAGLN,ACTA2\",MYH11,myosin heavy chain 11,HGNC:7569,,TAGLN,transgelin,HGNC:11553,,ACTA2,\"actin alpha 2, smooth muscle\",HGNC:130,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,conus artery,conus artery,FMA:15736,,fibroblast,fibroblast,CL:0000057,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,right marginal artery,right marginal artery,FMA:3818,,endothelial cell,endothelial cell of artery,CL:1000413,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,right marginal artery,right marginal artery,FMA:3818,,smooth muscle cell,blood vessel endothelial cell,CL:0000071,,,,,,,,\"MYH11,TAGLN,ACTA2\",MYH11,myosin heavy chain 11,HGNC:7569,,TAGLN,transgelin,HGNC:11553,,ACTA2,\"actin alpha 2, smooth muscle\",HGNC:130,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,right marginal artery,right marginal artery,FMA:3818,,fibroblast,fibroblast,CL:0000057,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,anterior cardiac veins,Anterior cardiac vein,FMA:76767,,endothelial cell,endothelial cell of artery,CL:1000413,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,anterior cardiac veins,Anterior cardiac vein,FMA:76767,,smooth muscle cell,blood vessel endothelial cell,CL:0000071,,,,,,,,\"MYH11,TAGLN,ACTA2\",MYH11,myosin heavy chain 11,HGNC:7569,,TAGLN,transgelin,HGNC:11553,,ACTA2,\"actin alpha 2, smooth muscle\",HGNC:130,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,anterior cardiac veins,Anterior cardiac vein,FMA:76767,,fibroblast,fibroblast,CL:0000057,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,vasculature,vasculature,UBERON:0002049,,endothelial cell,blood vessel endothelial cell,CL:0000071,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,vasculature,vasculature,UBERON:0002049,,smooth muscle cell,vascular associated smooth muscle cell,CL:0000359,,,,,,,,\"MYH11,TAGLN,ACTA2\",MYH11,myosin heavy chain 11,HGNC:7569,,TAGLN,transgelin,HGNC:11553,,ACTA2,\"actin alpha 2, smooth muscle\",HGNC:130,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,vasculature,vasculature,UBERON:0002049,,fibroblast,fibroblast,CL:0000057,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,vasculature,capillary,UBERON:0001982,,pericyte,pericyte,CL:0000669,,,,,,,,\"RGS5,ABCC9,KCNJ8\",RGS5,regulator of G protein signaling 5,HGNC:10001,,ABCC9,ATP binding cassette subfamily C member 9,HGNC:60,,KCNJ8,potassium inwardly rectifying channel subfamily J member 8,HGNC:6269,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,vasculature,capillary,UBERON:0001982,,capillary endothelial cell,capillary endothelial cell,CL:0002144,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:10001,,ABCC9,ATP binding cassette subfamily C member 9,HGNC:60,,KCNJ8,potassium inwardly rectifying channel subfamily J member 8,HGNC:6269,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,vasculature,venule,UBERON:0001979,,pericyte,pericyte,CL:0000669,,,,,,,,\"RGS5,ABCC9,KCNJ8\",RGS5,regulator of G protein signaling 5,HGNC:10001,,ABCC9,ATP binding cassette subfamily C member 9,HGNC:60,,KCNJ8,potassium inwardly rectifying channel subfamily J member 8,HGNC:6269,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,myocardium,Myocardium of right ventricle,FMA:9535,,telocyte (interstitial like cell of cajal),telocyte,CL:0017004,,,,,,,,\"CD34,vimentin\",CD34,CD34 molecule,HGNC:1662,,VIM,vimentin,HGNC:12692,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,myocardium,Myocardium of right ventricle,FMA:9535,,lymphocyte,lymphocyte,CL:0000542,,,,,,,,\"CD8A,NKG7,LCK\",CD8A,CD8 subunit alpha,HGNC:1706,,NKG7,natural killer cell granule protein 7,HGNC:7830,,LCK,\"LCK proto-oncogene, Src family tyrosine kinase\",HGNC:6524,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,myocardium,Myocardium of right ventricle,FMA:9535,,dendritic cell,\"dendritic cell, human\",CL:0001056,,,,,,,,\"CD11b, CD11c, CD103, CD205\",ITGAM,integrin subunit alpha M,HGNC:6149,alias CD11b,ITGAX,integrin subunit alpha X,HGNC:6152,alias CD11c,ITGAE,integrin subunit alpha E,HGNC:6147,alias CD103,LY75,lymphocyte antigen 75,HGNC:6729,alias CD205,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,myocardium,Myocardium of right ventricle,FMA:9535,,adipocyte,fat cell,CL:0000136,,,,,,,,\"GPAM, LEP, FASN\",GPAM,\"glycerol-3-phosphate acyltransferase, mitochondrial\",HGNC:24865,,LEP,leptin,HGNC:6553,,FASN,fatty acid synthase,HGNC:3594,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,Moderator band,Septomarginal trabecula,FMA:7272,,cardiomyocyte,cardiac muscle cell,CL:0000746,,,,,,,,\"TTN, MYH7, MYL2, FHL2\",TTN,titin,HGNC:12403,,MYH7,myosin heavy chain 7,HGNC:7577,,MYL2,myosin light chain 2,HGNC:7583,,FHL2,four and a half LIM domains 2,HGNC:3703,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,Moderator band,Septomarginal trabecula,FMA:7272,,Purkinje fiber cell,Purkinje myocyte,CL:0002068,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,Moderator band,Septomarginal trabecula,FMA:7272,,fibroblast,fibroblast,CL:0000057,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,Moderator band,Septomarginal trabecula,FMA:7272,,macrophage,macrophage,CL:0000235,,,,,,,,\"CD14,C1QA,CD68, FOLR2\",CD14,CD14 molecule,HGNC:1628,,C1QA,complement C1q A chain,HGNC:1241,,CD68,CD68 molecule,HGNC:1693,,FOLR2,folate receptor beta,HGNC:3793,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,Moderator band,Septomarginal trabecula,FMA:7272,,endothelial cell,blood vessel endothelial cell,CL:0000071,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,Moderator band,Septomarginal trabecula,FMA:7272,,smooth muscle cell,vascular associated smooth muscle cell,CL:0000359,,,,,,,,\"MYH11,TAGLN,ACTA2\",MYH11,myosin heavy chain 11,HGNC:7569,,TAGLN,transgelin,HGNC:11553,,ACTA2,\"actin alpha 2, smooth muscle\",HGNC:130,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,Moderator band,Septomarginal trabecula,FMA:7272,,fibroblast,fibroblast,CL:0000057,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,Moderator band,Septomarginal trabecula,FMA:7272,,telocyte (interstitial like cell of cajal),telocyte,CL:0017004,,,,,,,,\"CD34,vimentin\",CD34,CD34 molecule,HGNC:1662,,VIM,vimentin,HGNC:12692,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,Moderator band,Septomarginal trabecula,FMA:7272,,lymphocyte,lymphocyte,CL:0000542,,,,,,,,\"CD8A,NKG7,LCK\",CD8A,CD8 subunit alpha,HGNC:1706,,NKG7,natural killer cell granule protein 7,HGNC:7830,,LCK,\"LCK proto-oncogene, Src family tyrosine kinase\",HGNC:6524,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,right ventricle,heart right ventricle,UBERON:0002080,Moderator band,Septomarginal trabecula,FMA:7272,,dendritic cell,\"dendritic cell, human\",CL:0001056,,,,,,,,\"CD14,C1QA,FOLR2\",CD14,CD14 molecule,HGNC:1628,,C1QA,complement C1q A chain,HGNC:1241,,FOLR2,folate receptor beta,HGNC:3793,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,Cardial valve,cardiac valve,UBERON:0000946,Tricuspid valve,Tricuspid valve,UBERON:0002134,,valve interstitial cell,valve interstitial cell,CL:4030032,\"[NTR] valve interstitial cell (heart) #1736 \nhttps://github.com/obophenotype/cell-ontology/issues/1736\",,,,,,,\"PDGFRA, GSN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,Cardial valve,cardiac valve,UBERON:0000946,Tricuspid valve,Tricuspid valve,UBERON:0002134,,endocardial,endocardial cell,CL:0002350,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,Cardial valve,cardiac valve,UBERON:0000946,Pulmonary Valve,Pulmonary Valve,UBERON:0002146,,valve interstitial cell,valve interstitial cell,CL:4030032,\"[NTR] valve interstitial cell (heart) #1736 \nhttps://github.com/obophenotype/cell-ontology/issues/1736\",,,,,,,\"PDGFRA, GSN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,Cardial valve,cardiac valve,UBERON:0000946,Pulmonary Valve,Pulmonary Valve,UBERON:0002146,,endocardial,endocardial cell,CL:0002350,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,Cardial valve,cardiac valve,UBERON:0000946,Mitral valve,Mitral valve,UBERON:0002135,,valve interstitial cell,valve interstitial cell,CL:4030032,,,,,,,,\"PDGFRA, GSN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,Cardial valve,cardiac valve,UBERON:0000946,Mitral valve,Mitral valve,UBERON:0002135,,endocardial,endocardial cell,CL:0002350,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,Cardial valve,cardiac valve,UBERON:0000946,Aortic valve,Aortic valve,UBERON:0002137,,valve interstitial cell,valve interstitial cell,CL:4030032,\"[NTR] valve interstitial cell (heart) #1736 \nhttps://github.com/obophenotype/cell-ontology/issues/1736\",,,,,,,\"PDGFRA, GSN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,Cardial valve,cardiac valve,UBERON:0000946,Aortic valve,Aortic valve,UBERON:0002137,,endothelial cell,blood vessel endothelial cell,CL:0000071,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,Epicardium,epicardium,UBERON:0002348,,,,,mesothelial cell,mesothelial cell,CL:0000077,,,,,,,,\"CRT, AE1/AE3, MSLN, WT1, BNC1\",CALR,calreticulin,HGNC:1455,alias CRT,MSLN,mesothelin,HGNC:7371,,WT1,WT1 transcription factor,HGNC:12796,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,Epicardium,epicardium,UBERON:0002348,,,,,adipocyte,epicardial adipocyte,CL:1000309,,,,,,,,\"GPAM, LEP, FASN\",GPAM,\"glycerol-3-phosphate acyltransferase, mitochondrial\",HGNC:24865,,LEP,leptin,HGNC:6553,,FASN,fatty acid synthase,HGNC:3594,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,Epicardium,epicardium,UBERON:0002348,,,,,Schwann Cell,Schwann cell,CL:0002573,,,,,,,,\"SOX10, S100\",SOX10,SRY-box transcription factor 10,HGNC:11190,,S100,,,many variants,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,Epicardium,epicardium,UBERON:0002348,,,,,smooth muscle cell,vascular associated smooth muscle cell,CL:0000359,,,,,,,,\"MYH11,TAGLN,ACTA2\",MYH11,myosin heavy chain 11,HGNC:7569,,TAGLN,transgelin,HGNC:11553,,ACTA2,\"actin alpha 2, smooth muscle\",HGNC:130,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,Epicardium,epicardium,UBERON:0002348,,,,,fibroblast,fibroblast,CL:0000057,,,,,,,,\"PDGFRA, GSN, DCN\",PDGFRA,platelet derived growth factor receptor alpha,HGNC:8803,,GSN,gelsolin,HGNC:4620,,DCN,decorin,HGNC:2705,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,Epicardium,epicardium,UBERON:0002348,,,,,endothelial cell,blood vessel endothelial cell,CL:0000071,,,,,,,,\"PECAM1, VWF, CDH5\",PECAM1,platelet and endothelial cell adhesion molecule 1,HGNC:8823,,VWF,von Willebrand factor,HGNC:12726,,CDH5,cadherin 5,HGNC:1764,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,Epicardium,epicardium,UBERON:0002348,,,,,macrophage,macrophage,CL:0000235,,,,,,,,\"CD14,C1QA,FOLR2\",CD14,CD14 molecule,HGNC:1628,,C1QA,complement C1q A chain,HGNC:1241,,FOLR2,folate receptor beta,HGNC:3793,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,Epicardium,epicardium,UBERON:0002348,,,FMA:83539,,mast cell,mast cell ,CL:0000097,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,Epicardium,epicardium,UBERON:0002348,,,FMA:83539,,lymphatic endothelial cell,endothelial cell of lymphatic vessel,CL:0002138,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,Epicardium,epicardium,UBERON:0002348,,,FMA:83539,,B lymphocyte,B cell,CL:0000236,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nheart,heart,UBERON:0000948,Epicardium,epicardium,UBERON:0002348,,,FMA:83539,,NK/T lymphocyte,immature NK T cell,CL:0000914,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,", "parsed": [["Anatomical Structures, Cell Types and Biomarkers Table for Heart", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["Author Name(s):", "Shin Lin; Marc Halushka; Avinash Boppana", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["Author ORCID(s):", "0000-0003-0118-0413; 0000-0002-7112-7389; 0000-0003-0834-8274", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["Reviewer(s):", "Kalyanam Shivkumar; Peter Hanna; Ellen M. Quardokus ", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["Reviewer ORCID(s):", "0000-0002-4121-1766; 0000-0003-3092-5090; 0000-0001-7655-4833", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["General Publication(s):", "DOI: 10.1038/s41586-020-2797-4", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["Data DOI:", "https://doi.org/10.48539/HBM723.KFRP.582", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["Date:", "December 15, 2023", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["Version Number:", "v1.3", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["AS/1", "AS/1/LABEL", "AS/1/ID", "AS/2", "AS/2/LABEL", "AS/2/ID", "AS/3", "AS/3/LABEL", "AS/3/ID", "AS/3/NOTE", "CT/1", "CT/1/LABEL", "CT/1/ID", "CT/1/NOTES", "CT/2", "CT/2/LABEL", "CT/2/ID", "CT/3", "CT/3/LABEL", "CT/3/ID", "Combined gene Markers", "BGene/1", "BGene/1/LABEL", "BGene/1/ID", "BGene/1/NOTES", "BGene/2", "BGene/2/LABEL", "BGene/2/ID", "BGene/2/NOTES", "BGene/3", "BGene/3/LABEL", "BGene/3/ID", "BGene/3/NOTES", "BGene/4", "BGene/4/LABEL", "BGene/4/ID", "BGene/4/NOTES", "FTU/1", "FTU/1/LABEL", "FTU/1/ID", "REF/1", "REF/1/DOI", "REF/1/NOTES", "REF/2", "REF/2/DOI", "REF/2/NOTES"], ["heart", "heart", "UBERON:0000948", "right atrium", "right cardiac atrium", "UBERON:0002078", "sinoatrial node", "sinoatrial node", "UBERON:0002351", "", "pacemaker cell", "cardiac pacemaker cell of sinoatrial node", "CL:1000477", "", "", "", "", "", "", "", "HCN4, Cx45", "HCN4", "hyperpolarization activated cyclic nucleotide gated potassium channel 4", "HGNC:16882", "", "GJC1", "gap junction protein gamma 1", "HGNC:4280", "alias Cx45", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "right atrium", "right cardiac atrium", "UBERON:0002078", "sinoatrial nodal artery", "Sinoatrial nodal branch of right coronary artery", "FMA:3823", "", "endothelial cell", "endothelial cell of artery", "CL:1000413", "", "", "", "", "", "", "", "PECAM1, VWF, CDH5", "PECAM1", "platelet and endothelial cell adhesion molecule 1", "HGNC:8823", "", "VWF", "von Willebrand factor", "HGNC:12726", "", "CDH5", "cadherin 5", "HGNC:1764", "", "", "", "", "", "", "", "", "", "", "arises from the right coronary artery in around 60% of people. In about 40% of cases, the sinoatrial artery is a branch of the left circumflex coronary artery", "", "", ""], ["heart", "heart", "UBERON:0000948", "right atrium", "right cardiac atrium", "UBERON:0002078", "sinoatrial nodal artery", "Sinoatrial nodal branch of right coronary artery", "FMA:3823", "", "smooth muscle cell", "smooth muscle cell of the coronary artery", "CL:0002592", "", "", "", "", "", "", "", "MYH11,TAGLN,ACTA2", "MYH11", "myosin heavy chain 11", "HGNC:7569", "", "TAGLN", "transgelin", "HGNC:11553", "", "ACTA2", "actin alpha 2, smooth muscle", "HGNC:130", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "right atrium", "right cardiac atrium", "UBERON:0002078", "sinoatrial nodal artery", "Sinoatrial nodal branch of right coronary artery", "FMA:3823", "", "fibroblast", "fibroblast", "CL:0000057", "", "", "", "", "", "", "", "PDGFRA, GSN, DCN", "PDGFRA", "platelet derived growth factor receptor alpha", "HGNC:8803", "", "GSN", "gelsolin", "HGNC:4620", "", "DCN", "decorin", "HGNC:2705", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "right atrium", "right cardiac atrium", "UBERON:0002078", "myocardium", "cardiac muscle of right atrium", "UBERON:0003379", "", "cardiomyocyte", "cardiac muscle cell", "CL:0000746", "", "", "", "", "", "", "", "NPPA, MYL4, MYL7", "NPPA", "natriuretic peptide A", "HGNC:7939", "", "MYL4", "myosin light chain 4", "HGNC:7585", "", "MYL7", "myosin light chain 7", "HGNC:21719", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "right atrium", "right cardiac atrium", "UBERON:0002078", "myocardium", "cardiac muscle of right atrium", "UBERON:0003379", "", "fibroblast", "cardiac atrium fibroblast", "CL:2000067", "", "", "", "", "", "", "", "PDGFRA, GSN, DCN", "PDGFRA", "platelet derived growth factor receptor alpha", "HGNC:8803", "", "GSN", "gelsolin", "HGNC:4620", "", "DCN", "decorin", "HGNC:2705", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "right atrium", "right cardiac atrium", "UBERON:0002078", "myocardium", "cardiac muscle of right atrium", "UBERON:0003379", "", "macrophage", "macrophage", "CL:0000235", "", "", "", "", "", "", "", "CD14,C1QA,CD68, FOLR2", "CD14", "CD14 molecule", "HGNC:1628", "", "C1QA", "complement C1q A chain", "HGNC:1241", "", "CD68", "CD68 molecule", "HGNC:1693", "", "FOLR2", "folate receptor beta", "HGNC:3793", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "right atrium", "right cardiac atrium", "UBERON:0002078", "myocardium", "cardiac muscle of right atrium", "UBERON:0003379", "", "Schwann Cell", "Schwann cell", "CL:0002573", "", "", "", "", "", "", "", "PLP1, NRXN1, NRXN3", "PLP1", "proteolipid protein 1", "HGNC:9086", "", "NRXN1", "neurexin 1", "HGNC:8008", "", "NRXN3", "neurexin 3", "HGNC:8010", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "right atrium", "right cardiac atrium", "UBERON:0002078", "myocardium", "cardiac muscle tissue of interventricular septum", "UBERON:0003383", "", "mast cell", "mast cell", "CL:0000097", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "right atrium", "right cardiac atrium", "UBERON:0002078", "myocardium", "cardiac muscle tissue of interventricular septum", "UBERON:0003383", "", "lymphatic endothelial cell", "endothelial cell of lymphatic vessel", "CL:0002138", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "right atrium", "right cardiac atrium", "UBERON:0002078", "myocardium", "cardiac muscle tissue of interventricular septum", "UBERON:0003383", "", "B lymphocyte", "B cell", "CL:0000236", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "right atrium", "right cardiac atrium", "UBERON:0002078", "myocardium", "cardiac muscle tissue of interventricular septum", "UBERON:0003383", "", "NK/T lymphocyte", "immature NK T cell", "CL:0000914", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "right atrium", "right cardiac atrium", "UBERON:0002078", "myocardium", "cardiac muscle tissue of interventricular septum", "UBERON:0003383", "", "Innate lymphoid cell", "Innate lymphoid cell", "CL:0001065", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "right atrium", "right cardiac atrium", "UBERON:0002078", "myocardium", "cardiac muscle tissue of interventricular septum", "UBERON:0003383", "", "endocardial cell", "endocardial cell", "CL:0002350", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "right atrium", "right cardiac atrium", "UBERON:0002078", "vasculature", "vasculature", "UBERON:0002049", "", "endothelial cell", "cardiac endothelial cell", "CL:0010008", "", "", "", "", "", "", "", "PECAM1, VWF, CDH5", "PECAM1", "platelet and endothelial cell adhesion molecule 1", "HGNC:8823", "", "VWF", "von Willebrand factor", "HGNC:12726", "", "CDH5", "cadherin 5", "HGNC:1764", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "right atrium", "right cardiac atrium", "UBERON:0002078", "vasculature", "vasculature", "UBERON:0002049", "", "smooth muscle cell", "vascular associated smooth muscle cell", "CL:0000359", "", "", "", "", "", "", "", "MYH11,TAGLN,ACTA2", "MYH11", "myosin heavy chain 11", "HGNC:7569", "", "TAGLN", "transgelin", "HGNC:11553", "", "ACTA2", "actin alpha 2, smooth muscle", "HGNC:130", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "right atrium", "right cardiac atrium", "UBERON:0002078", "vasculature", "vasculature", "UBERON:0002049", "", "fibroblast", "cardiac atrium fibroblast", "CL:2000067", "", "", "", "", "", "", "", "PDGFRA, GSN, DCN", "PDGFRA", "platelet derived growth factor receptor alpha", "HGNC:8803", "", "GSN", "gelsolin", "HGNC:4620", "", "DCN", "decorin", "HGNC:2705", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "right atrium", "right cardiac atrium", "UBERON:0002078", "capillary", "capillary", "UBERON:0001982", "", "pericyte", "pericyte", "CL:0000669", "", "", "", "", "", "", "", "RGS5, ABCC9, KCNJ8", "RGS5", "regulator of G protein signaling 5", "HGNC:10001", "", "ABCC9", "ATP binding cassette subfamily C member 9", "HGNC:60", "", "KCNJ8", "potassium inwardly rectifying channel subfamily J member 8", "HGNC:6269", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "right atrium", "right cardiac atrium", "UBERON:0002078", "venule", "venule", "UBERON:0001979", "", "pericyte", "pericyte", "CL:0000669", "", "", "", "", "", "", "", "RGS5, ABCC9, KCNJ8", "RGS5", "regulator of G protein signaling 5", "HGNC:10001", "", "ABCC9", "ATP binding cassette subfamily C member 9", "HGNC:60", "", "KCNJ8", "potassium inwardly rectifying channel subfamily J member 8", "HGNC:6269", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "right atrium", "right cardiac atrium", "UBERON:0002078", "anterior cardiac veins", "Anterior cardiac vein", "FMA:76767", "", "endothelial cell", "endothelial cell of artery", "CL:1000413", "", "", "", "", "", "", "", "PECAM1, VWF, CDH5", "PECAM1", "platelet and endothelial cell adhesion molecule 1", "HGNC:8823", "", "VWF", "von Willebrand factor", "HGNC:12726", "", "CDH5", "cadherin 5", "HGNC:1764", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "right atrium", "right cardiac atrium", "UBERON:0002078", "anterior cardiac veins", "Anterior cardiac vein", "FMA:76767", "", "smooth muscle cell", "smooth muscle cell of the coronary artery", "CL:0002592", "", "", "", "", "", "", "", "MYH11,TAGLN,ACTA2", "MYH11", "myosin heavy chain 11", "HGNC:7569", "", "TAGLN", "transgelin", "HGNC:11553", "", "ACTA2", "actin alpha 2, smooth muscle", "HGNC:130", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "right atrium", "right cardiac atrium", "UBERON:0002078", "anterior cardiac veins", "Anterior cardiac vein", "FMA:76767", "", "fibroblast", "fibroblast", "CL:0000057", "", "", "", "", "", "", "", "PDGFRA, GSN, DCN", "PDGFRA", "platelet derived growth factor receptor alpha", "HGNC:8803", "", "GSN", "gelsolin", "HGNC:4620", "", "DCN", "decorin", "HGNC:2705", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "right atrium", "right cardiac atrium", "UBERON:0002078", "myocardium", "Myocardium of right atrium", "FMA:83531", "", "telocyte (interstitial like cell of cajal)", "telocyte", "CL:0017004", "", "", "", "", "", "", "", "CD34,vimentin", "CD34", "CD34 molecule", "HGNC:1662", "", "VIM", "vimentin", "HGNC:12692", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "right atrium", "right cardiac atrium", "UBERON:0002078", "myocardium", "Myocardium of right atrium", "FMA:83531", "", "lymphocyte", "lymphocyte", "CL:0000542", "", "", "", "", "", "", "", "CD8A,NKG7,LCK", "CD8A", "CD8 subunit alpha", "HGNC:1706", "", "NKG7", "natural killer cell granule protein 7", "HGNC:7830", "", "LCK", "LCK proto-oncogene, Src family tyrosine kinase", "HGNC:6524", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "right atrium", "right cardiac atrium", "UBERON:0002078", "myocardium", "Myocardium of right atrium", "FMA:83531", "", "dendritic cell", "dendritic cell, human", "CL:0001056", "", "", "", "", "", "", "", "CD11b, CD11c, CD103, CD205", "ITGAM", "integrin subunit alpha M", "HGNC:6149", "alias CD11b", "ITGAX", "integrin subunit alpha X", "HGNC:6152", "alias CD11c", "ITGAE", "integrin subunit alpha E", "HGNC:6147", "alias CD103", "LY75", "lymphocyte antigen 75", "HGNC:6729", "alias CD205", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "right atrium", "right cardiac atrium", "UBERON:0002078", "myocardium", "Myocardium of right atrium", "FMA:83531", "", "adipocyte", "fat cell", "CL:0000136", "", "", "", "", "", "", "", "GPAM, LEP, FASN", "GPAM", "glycerol-3-phosphate acyltransferase, mitochondrial", "HGNC:24865", "", "LEP", "leptin", "HGNC:6553", "", "FASN", "fatty acid synthase", "HGNC:3594", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "atrioventricular junction", "atrioventricular region", "UBERON:0011820", "left circumflex artery", "circumflex branch of left coronary artery", "UBERON:0035422", "", "endothelial cell", "endothelial cell of artery", "CL:1000413", "", "", "", "", "", "", "", "PECAM1, VWF, CDH5", "PECAM1", "platelet and endothelial cell adhesion molecule 1", "HGNC:8823", "", "VWF", "von Willebrand factor", "HGNC:12726", "", "CDH5", "cadherin 5", "HGNC:1764", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "atrioventricular junction", "atrioventricular region", "UBERON:0011820", "left circumflex artery", "circumflex branch of left coronary artery", "UBERON:0035422", "", "smooth muscle cell", "smooth muscle cell of the coronary artery", "CL:0002592", "", "", "", "", "", "", "", "MYH11,TAGLN,ACTA2", "MYH11", "myosin heavy chain 11", "HGNC:7569", "", "TAGLN", "transgelin", "HGNC:11553", "", "ACTA2", "actin alpha 2, smooth muscle", "HGNC:130", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "atrioventricular junction", "atrioventricular region", "UBERON:0011820", "left circumflex artery", "circumflex branch of left coronary artery", "UBERON:0035422", "", "fibroblast", "fibroblast", "CL:0000057", "", "", "", "", "", "", "", "PDGFRA, GSN, DCN", "PDGFRA", "platelet derived growth factor receptor alpha", "HGNC:8803", "", "GSN", "gelsolin", "HGNC:4620", "", "DCN", "decorin", "HGNC:2705", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "atrioventricular junction", "atrioventricular region", "UBERON:0011820", "atrioventicular nodal artery", "Atrioventricular node branch of right coronary artery", "FMA:3851", "", "endothelial cell", "endothelial cell of artery", "CL:1000413", "", "", "", "", "", "", "", "PECAM1, VWF, CDH5", "PECAM1", "platelet and endothelial cell adhesion 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"", "", "PDGFRA, GSN, DCN", "PDGFRA", "platelet derived growth factor receptor alpha", "HGNC:8803", "", "GSN", "gelsolin", "HGNC:4620", "", "DCN", "decorin", "HGNC:2705", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "atrioventricular junction", "atrioventricular region", "UBERON:0011820", "coronary sinus", "coronary sinus", "UBERON:0005438", "", "endothelial cell", "endothelial cell of artery", "CL:1000413", "", "", "", "", "", "", "", "PECAM1, VWF, CDH5", "PECAM1", "platelet and endothelial cell adhesion molecule 1", "HGNC:8823", "", "VWF", "von Willebrand factor", "HGNC:12726", "", "CDH5", "cadherin 5", "HGNC:1764", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "atrioventricular junction", "atrioventricular region", "UBERON:0011820", "coronary sinus", "coronary sinus", "UBERON:0005438", "", "smooth muscle cell", "vascular associated smooth muscle cell", "CL:0000359", "", "", "", "", "", "", "", "MYH11,TAGLN,ACTA2", "MYH11", "myosin heavy chain 11", "HGNC:7569", "", "TAGLN", "transgelin", "HGNC:11553", "", "ACTA2", "actin alpha 2, smooth muscle", "HGNC:130", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "atrioventricular junction", "atrioventricular region", "UBERON:0011820", "coronary sinus", "coronary sinus", "UBERON:0005438", "", "fibroblast", "fibroblast", "CL:0000057", "", "", "", "", "", "", "", "PDGFRA, GSN, DCN", "PDGFRA", "platelet derived growth factor receptor alpha", "HGNC:8803", "", "GSN", "gelsolin", "HGNC:4620", "", "DCN", "decorin", "HGNC:2705", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "atrioventricular junction", "atrioventricular region", "UBERON:0011820", "atrioventricular node", "atrioventricular node", "UBERON:0002352", "", "pacemaker cell", "cardiac pacemaker cell of sinoatrial node", "CL:1000477", "", "", "", "", "", "", "", "HCN4, Cx45", "HCN4", "hyperpolarization activated cyclic nucleotide gated potassium channel 4", "HGNC:16882", "", "GJC1", "gap junction protein gamma 1", "HGNC:4280", "alias Cx45", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "atrioventricular junction", "atrioventricular region", "UBERON:0011820", "atrioventricular node", "atrioventricular node", "UBERON:0002352", "", "adipocyte", "fat cell", "CL:0000136", "", "", "", "", "", "", "", "GPAM, LEP, FASN", "GPAM", "glycerol-3-phosphate acyltransferase, mitochondrial", "HGNC:24865", "", "LEP", "leptin", "HGNC:6553", "", "FASN", "fatty acid synthase", "HGNC:3594", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "atrioventricular junction", "atrioventricular region", "UBERON:0011820", "right coronary artery", "right coronary artery", "UBERON:0001625", "", "endothelial cell", "endothelial cell of artery", "CL:1000413", "", "", "", "", "", "", "", "PECAM1, VWF, CDH5", "PECAM1", "platelet and endothelial cell adhesion molecule 1", "HGNC:8823", "", "VWF", "von Willebrand factor", "HGNC:12726", "", "CDH5", "cadherin 5", "HGNC:1764", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "atrioventricular junction", "atrioventricular region", "UBERON:0011820", "right coronary artery", "right coronary artery", "UBERON:0001625", "", "smooth muscle cell", "smooth muscle cell of the coronary artery", "CL:0002592", "", "", "", "", "", "", "", "MYH11,TAGLN,ACTA2", "MYH11", "myosin heavy chain 11", "HGNC:7569", "", "TAGLN", "transgelin", "HGNC:11553", "", "ACTA2", "actin alpha 2, smooth muscle", "HGNC:130", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "atrioventricular junction", "atrioventricular region", "UBERON:0011820", "right coronary artery", "right coronary artery", "UBERON:0001625", "", "fibroblast", "fibroblast", "CL:0000057", "", "", "", "", "", "", "", "PDGFRA, GSN, DCN", "PDGFRA", "platelet derived growth factor receptor alpha", "HGNC:8803", "", "GSN", "gelsolin", "HGNC:4620", "", "DCN", "decorin", "HGNC:2705", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "atrioventricular junction", "atrioventricular region", "UBERON:0011820", "small cardiac vein", "small cardiac vein", "UBERON:0035374", "", "endothelial cell", "endothelial cell of artery", "CL:1000413", "", "", "", "", "", "", "", "PECAM1, VWF, CDH5", "PECAM1", "platelet and endothelial cell adhesion molecule 1", "HGNC:8823", "", "VWF", "von Willebrand factor", "HGNC:12726", "", "CDH5", "cadherin 5", "HGNC:1764", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "atrioventricular junction", "atrioventricular region", "UBERON:0011820", "small cardiac vein", "small cardiac vein", "UBERON:0035374", "", "smooth muscle cell", "smooth muscle cell of the coronary artery", "CL:0002592", "", 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"UBERON:0006566", "", "NK/T lymphocyte", "immature NK T cell", "CL:0000914", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "left ventricle", "heart left ventricle", "UBERON:0002084", "myocardium", "left ventricle myocardium", "UBERON:0006566", "", "ILC", "innate lymphoid cell", "CL:0001065", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "left ventricle", "heart left ventricle", "UBERON:0002084", "myocardium", "left ventricle myocardium", "UBERON:0006566", "", "endocardial", "endocardial cell", "CL:0002350", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["heart", "heart", "UBERON:0000948", "left ventricle", "heart left ventricle", "UBERON:0002084", "left 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"rdfs_label": "T cell receptor alpha constant", "name": "TRAC", "b_type": "gene"}, {"id": "HGNC:12156", "rdfs_label": "T cell receptor beta constant 1", "name": "TRBC1", "b_type": "gene"}, {"id": "HGNC:6024", "rdfs_label": "interleukin 7 receptor", "name": "IL7R", "b_type": "gene"}, {"id": "HGNC:30698", "rdfs_label": "T cell receptor associated transmembrane adaptor 1", "name": "TRAT1", "b_type": "gene"}, {"id": "HGNC:6711", "rdfs_label": "lymphotoxin beta", "name": "LTB", "b_type": "gene"}, {"id": "HGNC:636", "rdfs_label": "aquaporin 3 (Gill blood group)", "name": "AQP3", "b_type": "gene"}, {"id": "HGNC:6106", "rdfs_label": "forkhead box P3", "name": "FOXP3", "b_type": "gene"}, {"id": "HGNC:11910", "rdfs_label": "TNF receptor superfamily member 25", "name": "TNFRSF25", "b_type": "gene"}, {"id": "HGNC:26838", "rdfs_label": "T cell immunoreceptor with Ig and ITIM domains", "name": "TIGIT", "b_type": "gene"}, {"id": "HGNC:1607", "rdfs_label": "C-C motif chemokine receptor 6", "name": "CCR6", "b_type": "gene"}, {"id": "HGNC:11918", "rdfs_label": "TNF receptor superfamily member 4", "name": "TNFRSF4", "b_type": "gene"}, {"id": "HGNC:1674", "rdfs_label": "CD3E", "name": "CD3", "proteinPresence": "Positive", "b_type": "protein"}, {"id": "HGNC:1678", "rdfs_label": "CD4", "name": "CD4", "proteinPresence": "Intermediate", "b_type": "protein"}, {"id": "HGNC:1706", "rdfs_label": "CD8A", "name": "CD8", "proteinPresence": "Intermediate", "b_type": "protein"}, {"id": "HGNC:6008", "rdfs_label": "IL2RA", "name": "CD25", "proteinPresence": "Positive", "b_type": "protein"}, {"id": "HGNC:6106", "rdfs_label": "FOXP3", "name": "FOXP3", "proteinPresence": "Positive", "b_type": "protein"}, {"id": "HGNC:2505", "rdfs_label": "CTLA4", "name": "CTLA4", "proteinPresence": "Positive", "b_type": "protein"}], "biomarkers_protein": [{"id": "HGNC:1674", "rdfs_label": "CD3E", "name": "CD3", "proteinPresence": "Positive", "b_type": "protein"}, {"id": "HGNC:1678", "rdfs_label": "CD4", "name": "CD4", "proteinPresence": "Intermediate", "b_type": "protein"}, {"id": "HGNC:1706", "rdfs_label": "CD8A", "name": "CD8", "proteinPresence": "Intermediate", "b_type": "protein"}, {"id": "HGNC:6008", "rdfs_label": "IL2RA", "name": "CD25", "proteinPresence": "Positive", "b_type": "protein"}, {"id": "HGNC:6106", "rdfs_label": "FOXP3", "name": "FOXP3", "proteinPresence": "Positive", "b_type": "protein"}, {"id": "HGNC:2505", "rdfs_label": "CTLA4", "name": "CTLA4", "proteinPresence": "Positive", "b_type": "protein"}], "biomarkers_gene": [{"id": "HGNC:12029", "rdfs_label": "T cell receptor alpha constant", "name": "TRAC", "b_type": "gene"}, {"id": "HGNC:12156", "rdfs_label": "T cell receptor beta constant 1", "name": "TRBC1", "b_type": "gene"}, {"id": "HGNC:6024", "rdfs_label": "interleukin 7 receptor", "name": "IL7R", "b_type": "gene"}, {"id": "HGNC:30698", "rdfs_label": "T cell receptor associated transmembrane adaptor 1", "name": "TRAT1", "b_type": "gene"}, {"id": "HGNC:6711", "rdfs_label": "lymphotoxin beta", "name": "LTB", "b_type": "gene"}, {"id": "HGNC:636", "rdfs_label": "aquaporin 3 (Gill blood group)", "name": "AQP3", "b_type": "gene"}, {"id": "HGNC:6106", "rdfs_label": "forkhead box P3", "name": "FOXP3", "b_type": "gene"}, {"id": "HGNC:11910", "rdfs_label": "TNF receptor superfamily member 25", "name": "TNFRSF25", "b_type": "gene"}, {"id": "HGNC:26838", "rdfs_label": "T cell immunoreceptor with Ig and ITIM domains", "name": "TIGIT", "b_type": "gene"}, {"id": "HGNC:1607", "rdfs_label": "C-C motif chemokine receptor 6", "name": "CCR6", "b_type": "gene"}, {"id": "HGNC:11918", "rdfs_label": "TNF receptor superfamily member 4", "name": "TNFRSF4", "b_type": "gene"}], "biomarkers_lipids": [], "biomarkers_meta": [], "biomarkers_prot": [], "ftu_types": [], "references": []}], "metadata": {"title": "Anatomical Structures, Cell Types and Biomarkers Table for Blood", "author_names": ["Muzlifah A. Haniffa", "Laura Jardine", "Sarah A. Teichmann"], "author_orcids": ["0000-0002-3927-2084", "0000-0003-4495-8205", "0000-0002-6294-6366"], "reviewer_names": ["Elisa Laurenti", "Bertie Gottgens", "Andrea J. Radtke", "Rebecca T. Beuschel", "Ellen M. Quardokus"], "reviewer_orcids": ["0000-0002-9917-9092", "0000-0001-6302-5705", "0000-0003-4379-8967", "0000-0002-3882-457X", "0000-0001-7655-4833"], "general_publications": ["DOI: 10.1126/science.aah4573", "DOI: 10.1126/science.aay3224", "DOI: 10.1038/s41586-019-1652-y"], "data_doi": "https://doi.org/10.48539/HBM785.CGSG.458", "date": "December 15, 2022", "version": "v1.3"}, "csv": "\"Anatomical Structures, Cell Types and Biomarkers Table for Blood\",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\n,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nAuthor Name(s):,Muzlifah A. Haniffa; Laura Jardine; Sarah A. Teichmann,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nAuthor ORCID(s):,0000-0002-3927-2084; 0000-0003-4495-8205; 0000-0002-6294-6366,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nReviewer(s):,Elisa Laurenti; Bertie Gottgens; Andrea J. Radtke; Rebecca T. Beuschel; Ellen M. Quardokus,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nReviewer ORCID(s):,0000-0002-9917-9092;0000-0001-6302-5705; 0000-0003-4379-8967;0000-0002-3882-457X; 0000-0001-7655-4833,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nGeneral Publication(s):,DOI: 10.1126/science.aah4573; DOI: 10.1126/science.aay3224; DOI: 10.1038/s41586-019-1652-y,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nData DOI:,https://doi.org/10.48539/HBM785.CGSG.458,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nDate:,\"December 15, 2022\",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nVersion Number:,v1.3,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nAS/1,AS/1/LABEL,AS/1/ID,CT/1,CT/1/LABEL,CT/1/ID,CT/2,CT/2/LABEL,CT/2/ID,All Gene Biomarkers,BGene/1,BGene/1/LABEL,BGene/1/ID,BGene/2,BGene/2/LABEL,BGene/2/ID,BGene/3,BGene/3/LABEL,BGene/3/ID,BGene/4,BGene/4/LABEL,BGene/4/ID,BGene/5,BGene/5/LABEL,BGene/5/ID,BGene/6,BGene/6/LABEL,BGene/6/ID,BGene/7,BGene/7/LABEL,BGene/7/ID,BGene/8,BGene/8/LABEL,BGene/8/ID,BGene/9,BGene/9/LABEL,BGene/9/ID,BGene/10,BGene/10/LABEL,BGene/10/ID,BGene/11,BGene/11/LABEL,BGene/11/ID,BGene/12,BGene/12/LABEL,BGene/12/ID,BGene/13,BGene/13/LABEL,BGene/13/ID,BProtein/1,BProtein/1/LABEL,BProtein/1/ID,BProtein/2,BProtein/2/LABEL,BProtein/2/ID,BProtein/3,BProtein/3/LABEL,BProtein/3/ID,BProtein/4,BProtein/4/LABEL,BProtein/4/ID,BProtein/5,BProtein/5/LABEL,BProtein/5/ID,BProtein/6,BProtein/6/LABEL,BProtein/6/ID,BProtein/7,BProtein/7/LABEL,BProtein/7/ID,BProtein/8,BProtein/8/LABEL,BProtein/8/ID,BProtein/9,BProtein/9/LABEL,BProtein/9/ID,BProtein/10,BProtein/10/LABEL,BProtein/10/ID,BProtein/11,BProtein/11/LABEL,BProtein/11/ID,FTU/1,FTU/1/LABEL,FTU/1/ID,REF/1,REF/1/DOI,REF/1/NOTES,REF/2,REF/2/DOI,REF/2/NOTES\r\nBlood,Blood,UBERON:0000178,B lineage,lymphocyte of B lineage,CL:0000945,immature B cell,immature B cell,CL:0000816,\"CD19, PAX5, IGHM, MS4A1\",CD19,CD19 molecule,HGNC:1633,PAX5,paired box 5,HGNC:8619,IGHM,immunoglobulin heavy constant mu,HGNC:5541,MS4A1,membrane spanning 4-domains A1,HGNC:7315,,,,,,,,,,,,,,,,,,,,,,,,,,,,CD19+,CD19,HGNC:1633,CD10+,MME,HGNC:7154,CD20+,MS4A1,HGNC:7315,IgM+/-,IGHM,HGNC:5541,IgD+/-,IGHD,HGNC:5480,,,,,,,,,,,,,,,,,,,,,,,DOI: 10.3389/fimmu.2012.00302,,,,\r\nBlood,Blood,UBERON:0000178,B lineage,lymphocyte of B lineage,CL:0000945,memory B cell,memory B cell,CL:0000787,\"CD19, MS4A1, IGHA1, IGHG1, CD82, SELL, CD27\",CD19,CD19 molecule,HGNC:1633,MS4A1,membrane spanning 4-domains A1,HGNC:7315,IGHA1,immunoglobulin heavy constant alpha 1,HGNC:5478,IGHG1,immunoglobulin heavy constant gamma 1 (G1m marker),HGNC:5525,CD82,CD82 molecule,HGNC:6210,SELL,selectin L,HGNC:10720,CD27,CD27 molecule,HGNC:11922,,,,,,,,,,,,,,,,,,,CD19+,CD19,HGNC:1633,CD20+,MS4A1,HGNC:7315,CD21+,CR2,HGNC:2336,CD22+,CD22,HGNC:1643,CD27+,CD27,HGNC:11922,IgM+/-,IGHM,HGNC:5541,IgD+/-,IGHD,HGNC:5480,,,,,,,,,,,,,,,,,DOI: 10.1002/jcla.20001,,,,\r\nBlood,Blood,UBERON:0000178,B lineage,lymphocyte of B lineage,CL:0000945,naive B cell,naive B cell,CL:0000788,\"CD19, PAX5, IGHM, MS4A1, CD40, FCER2\",CD19,CD19 molecule,HGNC:1633,PAX5,paired box 5,HGNC:8619,IGHM,immunoglobulin heavy constant mu,HGNC:5541,MS4A1,membrane spanning 4-domains A1,HGNC:7315,CD40,CD40 molecule,HGNC:11919,FCER2,Fc epsilon receptor II,HGNC:3612,,,,,,,,,,,,,,,,,,,,,,CD19+,CD19,HGNC:1633,CD20+,MS4A1,HGNC:7315,CD21+,CR2,HGNC:2336,IgD+,IGHD,HGNC:5480,CD27-,CD27,HGNC:11922,CD10-,MME,HGNC:7154,CD38+/lo,CD38,HGNC:1667,CD24+/lo,CD24,HGNC:1645,,,,,,,,,,,,,,DOI: 10.1038/s41467-019-12464-3,,,,\r\nBlood,Blood,UBERON:0000178,B lineage,lymphocyte of B lineage,CL:0000945,transitional B cell,transitional stage B cell,CL:0000818,\"IGLL5, SOX4, BCL7A, TCL1A, FCRLA, CD24\",IGLL5,immunoglobulin lambda like polypeptide 5,HGNC:38476,SOX4,SRY-box transcription factor 4,HGNC:11200,BCL7A,BAF chromatin remodeling complex subunit BCL7A,HGNC:1004,TCL1A,TCL1 family AKT coactivator A,HGNC:11648,FCRLA,Fc receptor like A,HGNC:18504,CD24,CD24 molecule,HGNC:1645,,,,,,,,,,,,,,,,,,,,,,CD19+,CD19,HGNC:1633,CD20+,MS4A1,HGNC:7315,CD21+,CR2,HGNC:2336,CD22+,CD22,HGNC:1643,IgD+,IGHD,HGNC:5480,CD27-,CD27,HGNC:11922,CD10+,MME,HGNC:7154,CD38+,CD38,HGNC:1667,CD24+,CD24,HGNC:1645,CD5+,CD5,HGNC:1685,,,,,,,,DOI: 10.1073/pnas.172384399,,,,\r\nBlood,Blood,UBERON:0000178,dendritic cell (DC),\"dendritic cell, human\",CL:0001056,dendritic cell type 1 (DC1),CD141-positive myeloid dendritic cell,CL:0002394,\"CLEC9A, CADM1, XCR1\",CLEC9A,C-type lectin domain containing 9A,HGNC:26705,CADM1,cell adhesion molecule 1,HGNC:5951,XCR1,X-C motif chemokine receptor 1,HGNC:1625,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,CD3-,CD3E,HGNC:1674,CD19-,CD19,HGNC:1633,CD14-,CD14,HGNC:1628,CD16-,FCGR3A,HGNC:3619,CD56-,NCAM1,HGNC:7656,HLA-DR+,,,CD11c+/lo,ITGAX,HGNC:6152,CD123-,IL3RA,HGNC:6012,CD141hi,THBD,HGNC:11784,CLEC9A+,CLEC9A,HGNC:26705,CD1c-/lo,CD1C,HGNC:1636,,,,,DOI: 10.3109/10428194.2013.781167,,,,\r\nBlood,Blood,UBERON:0000178,dendritic cell (DC),\"dendritic cell, human\",CL:0001056,dendritic cell type 2 (DC2),CD1c-positive myeloid dendritic cell,CL:0002399,\"CD1C, FCER1A, CLEC10A, HLA-DQA2, HLA-DPB1, FCGR2B\",CD1C,CD1c molecule,HGNC:1636,FCER1A,Fc epsilon receptor Ia,HGNC:3609,CLEC10A,C-type lectin domain containing 10A,HGNC:16916,HLA-DQA2,\"major histocompatibility complex, class II, DQ alpha 2\",HGNC:4943,HLA-DPB1,\"major histocompatibility complex, class II, DP beta 1\",HGNC:4940,FCGR2B,Fc gamma receptor IIb,HGNC:3618,,,,,,,,,,,,,,,,,,,,,,CD3-,CD3E,HGNC:1674,CD19-,CD19,HGNC:1633,CD14-,CD14,HGNC:1628,CD16-,FCGR3A,HGNC:3619,CD56-,NCAM1,HGNC:7656,HLA-DR+,,,CD11c+/lo,ITGAX,HGNC:6152,CD123-,IL3RA,HGNC:6012,CD141-,THBD,HGNC:11784,CD1c+,CD1C,HGNC:1636,,,,,,,,DOI: 10.1016/j.immuni.2017.04.019,,,,\r\nBlood,Blood,UBERON:0000178,dendritic cell (DC),\"dendritic cell, human\",CL:0001056,dendritic cell type 3 (DC3),CD1c-positive myeloid dendritic cell,CL:0002399,\"CD1C, FCER1A, CLEC10A, S100A8, S100A9, CD36, CD163\",CD1C,CD1c molecule,HGNC:1636,FCER1A,Fc epsilon receptor Ia,HGNC:3609,CLEC10A,C-type lectin domain containing 10A,HGNC:16916,S100A8,S100 calcium binding protein A8,HGNC:10498,S100A9,S100 calcium binding protein A9,HGNC:10499,CD36,CD36 molecule,HGNC:1663,CD163,CD163 molecule,HGNC:1631,,,,,,,,,,,,,,,,,,,CD3-,CD3E,HGNC:1674,CD19-,CD19,HGNC:1633,CD14-/lo,CD14,HGNC:1628,CD16-,FCGR3A,HGNC:3619,CD56-,NCAM1,HGNC:7656,HLA-DR+,,,CD11c+/lo,ITGAX,HGNC:6152,CD123-,IL3RA,HGNC:6012,CD141-,THBD,HGNC:11784,CD1c+,CD1C,HGNC:1636,,,,,,,,DOI: 10.1002/cyto.a.23724,,,,\r\nBlood,Blood,UBERON:0000178,dendritic cell (DC),\"dendritic cell, human\",CL:0001056,Plasmacytoid Dendritic Cell (pDC),\"plasmacytoid dendritic cell, human\",CL:0001058,\"GZMB, JCHAIN, SERPINF1\",GZMB,granzyme B,HGNC:4709,JCHAIN,joining chain of multimeric IgA and IgM,HGNC:5713,SERPINF1,serpin family F member 1,HGNC:8824,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,CD3-,CD3E,HGNC:1674,CD19-,CD19,HGNC:1633,CD14-,CD14,HGNC:1628,CD16-,FCGR3A,HGNC:3619,CD56-,NCAM1,HGNC:7656,HLA-DR+,,,CD11c-,ITGAX,HGNC:6152,CD123+,IL3RA,HGNC:6012,CD303+,CLEC4C,HGNC:13258,,,,,,,,,,,DOI: 10.1111/bjh.14467,,,,\r\nBlood,Blood,UBERON:0000178,dendritic cell (DC),\"dendritic cell, human\",CL:0001056,transitional Dendritic Cell (tDC),immature conventional dendritic cell,CL:0000840,\"AXL, SIGLEC6, CD22\",AXL,AXL receptor tyrosine kinase,HGNC:905,SIGLEC6,sialic acid binding Ig like lectin 6,HGNC:10875,CD22,CD22 molecule,HGNC:1643,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,CD3-,CD3E,HGNC:1674,CD19-,CD19,HGNC:1633,CD14-,CD14,HGNC:1628,CD16-,FCGR3A,HGNC:3619,CD56-,NCAM1,HGNC:7656,HLA-DR+,,,CD11c-/+,ITGAX,HGNC:6152,CD123+,IL3RA,HGNC:6012,AXL+,AXL,HGNC:905,Siglec6+,SIGLEC6,HGNC:10875,,,,,,,,DOI: 10.1182/blood-2004-02-0769,,,,\r\nBlood,Blood,UBERON:0000178,monocyte,monocyte,CL:0000576,CD14 monocyte,CD14-positive monocyte,CL:0001054,\"VCAN, CST3, CD14, S100A8, S100A9, FCN\",VCAN,versican,HGNC:2464,CST3,cystatin C,HGNC:2475,CD14,CD14 molecule,HGNC:1628,S100A8,S100 calcium binding protein A8,HGNC:10498,S100A9,S100 calcium binding protein A9,HGNC:10499,FCN1,ficolin 1,HGNC:3623,,,,,,,,,,,,,,,,,,,,,,CD3-,CD3E,HGNC:1674,CD19-,CD19,HGNC:1633,CD56+,NCAM1,HGNC:7656,CD14+,CD14,HGNC:1628,CD16-/lo,FCGR3A,HGNC:3619,CD11c+,ITGAX,HGNC:6152,CD64+,FCGR1A,HGNC:3613,CD62L+,SELL,HGNC:10720,CCR2+,CCR2,HGNC:1603,CD36+,CD36,HGNC:1663,,,,,,,,,,,,\r\nBlood,Blood,UBERON:0000178,monocyte,monocyte,CL:0000576,CD16 monocyte,\"CD14-low, CD16-positive monocyte\",CL:0002396,\"HES4, MS4A7, IFITM3, FCGR3A, CXCL16, LST1\",HES4,hes family bHLH transcription factor 4,HGNC:24149,MS4A7,membrane spanning 4-domains A7,HGNC:13378,IFITM3,interferon induced transmembrane protein 3,HGNC:5414,FCGR3A,Fc gamma receptor IIIa,HGNC:3619,CXCL16,C-X-C motif chemokine ligand 16,HGNC:16642,LST1,leukocyte specific transcript 1,HGNC:14189,,,,,,,,,,,,,,,,,,,,,,CD3-,CD3E,HGNC:1674,CD19-,CD19,HGNC:1633,CD56+,NCAM1,HGNC:7656,CD14-/lo,CD14,HGNC:1628,CD16+,FCGR3A,HGNC:3619,CX3CR1+,CX3CR1,HGNC:2558,CXCR4+,CXCR4,HGNC:2561,,,,,,,,,,,,,,,,,,,,,\r\nBlood,Blood,UBERON:0000178,neutrophilic granulocyte,neutrophil,CL:0000775,neutrophil,neutrophil,CL:0000775,\"ITGAM, MMP9, PGLYRP1, ORM1, S100A12, FCN1\",ITGAM,integrin subunit alpha M,HGNC:6149,MMP9,matrix metallopeptidase 9,HGNC:7176,PGLYRP1,peptidoglycan recognition protein 1,HGNC:8904,ORM1,orosomucoid 1,HGNC:8498,S100A12,S100 calcium binding protein A12,HGNC:10489,FCN1,ficolin 1,HGNC:3623,,,,,,,,,,,,,,,,,,,,,,CD13+,ANPEP,HGNC:500,CD15+,FUT4,HGNC:4015,CD43+,SPN,HGNC:11249,CD66b+,CEACAM8,HGNC:1820,CD49d+,ITGA4,HGNC:6140,CD11b+,ITGAM,HGNC:6149,CD24+,CD24,HGNC:1645,CD16-,FCGR3A,HGNC:3619,,,,,,,,,,,,,,,,,,\r\nBlood,Blood,UBERON:0000178,granulocyte,granulocyte,CL:0000094,eosinophil,eosinophil,CL:0000771,\"HDC, CLC, CPA3, IL5RA, GATA2, MS4A3, HPGDS\",HDC,histidine decarboxylase,HGNC:4855,CLC,Charcot-Leyden crystal galectin,HGNC:2014,CPA3,carboxypeptidase A3,HGNC:2298,IL5RA,interleukin 5 receptor subunit alpha,HGNC:6017,GATA2,GATA binding protein 2,HGNC:4171,MS4A3,membrane spanning 4-domains A3,HGNC:7317,HPGDS,hematopoietic prostaglandin D synthase,HGNC:17890,,,,,,,,,,,,,,,,,,,CD15+,FUT4,HGNC:4015,CD125+,IL5RA,HGNC:6017,FcER1A+,FCER1A,HGNC:3609,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nBlood,Blood,UBERON:0000178,granulocyte,granulocyte,CL:0000094,basophil,basophil,CL:0000767,\"HDC, CLC, CPA3, IL5RA, GATA2, MS4A3, IL3RA\",HDC,histidine decarboxylase,HGNC:4855,CLC,Charcot-Leyden crystal galectin,HGNC:2014,CPA3,carboxypeptidase A3,HGNC:2298,IL5RA,interleukin 5 receptor subunit alpha,HGNC:6017,GATA2,GATA binding protein 2,HGNC:4171,MS4A3,membrane spanning 4-domains A3,HGNC:7317,IL3RA,interleukin 3 receptor subunit alpha,HGNC:6012,,,,,,,,,,,,,,,,,,,CD123+,IL3RA,HGNC:6012,CD125+,IL5RA,HGNC:6017,CCR3+,CCR3,HGNC:1604,FcER1A+,FCER1A,HGNC:3609,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nBlood,Blood,UBERON:0000178,T lymphocytes,T cell,CL:0000084,CD4 naive,\"naive thymus-derived CD4-positive, alpha-beta T cell\",CL:0000895,\"CD3D, TRAC, TRBC1, IL7R, TRAT1, LTB, AQP3, CD40LG\",CD3D,CD3d molecule,HGNC:1673,TRAC,T cell receptor alpha constant,HGNC:12029,TRBC1,T cell receptor beta constant 1,HGNC:12156,IL7R,interleukin 7 receptor,HGNC:6024,TRAT1,T cell receptor associated transmembrane adaptor 1,HGNC:30698,LTB,lymphotoxin beta,HGNC:6711,AQP3,aquaporin 3 (Gill blood group),HGNC:636,CD40LG,CD40 ligand,HGNC:11935,,,,,,,,,,,,,,,,CD3+,CD3E,HGNC:1674,CD4+,CD4,HGNC:1678,CD8-,CD8A,HGNC:1706,CD45RA+,PTPRC,HGNC:9666,CCR7+,CCR7,HGNC:1608,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nBlood,Blood,UBERON:0000178,T lymphocytes,T cell,CL:0000084,CD4 T cell memory,\"CD4-positive, alpha-beta memory T cell\",CL:0000897,\"CD3D, TRAC, IFI6, LGALS3, PDZD8, ANXA2, CRIP1\",CD3D,CD3d molecule,HGNC:1673,TRAC,T cell receptor alpha constant,HGNC:12029,IFI6,interferon alpha inducible protein 6,HGNC:4054,LGALS3,galectin 3,HGNC:6563,PDZD8,PDZ domain containing 8,HGNC:26974,ANXA2,annexin A2,HGNC:537,CRIP1,cysteine rich protein 1,HGNC:2360,,,,,,,,,,,,,,,,,,,CD3+,CD3E,HGNC:1674,CD4+,CD4,HGNC:1678,CD8-,CD8A,HGNC:1706,CD45RA-,PTPRC,HGNC:9666,CCR7+,CCR7,HGNC:1608,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nBlood,Blood,UBERON:0000178,T lymphocytes,T cell,CL:0000084,CD4 T cell memory,\"CD4-positive, alpha-beta memory T cell\",CL:0000897,\"CD3D, TRAC, IL4R, STAT1, MAL, SOCS1, IL2, ODC1, PSAT1, WARS, PYCR1, TNF, NME1\",CD3D,CD3d molecule,HGNC:1673,TRAC,T cell receptor alpha constant,HGNC:12029,IL4R,interleukin 4 receptor,HGNC:6015,STAT1,signal transducer and activator of transcription 1,HGNC:11362,MAL,\"mal, T cell differentiation protein\",HGNC:6817,SOCS1,suppressor of cytokine signaling 1,HGNC:19383,IL2,interleukin 2,HGNC:6001,ODC1,ornithine decarboxylase 1,HGNC:8109,PSAT1,phosphoserine aminotransferase 1,HGNC:19129,WARS,tryptophanyl-tRNA synthetase 1,HGNC:12729,PYCR1,pyrroline-5-carboxylate reductase 1,HGNC:9721,TNF,tumor necrosis factor,HGNC:11892,NME1,NME/NM23 nucleoside diphosphate kinase 1,HGNC:7849,CD3+,CD3E,HGNC:1674,CD4+,CD4,HGNC:1678,CD8-,CD8A,HGNC:1706,CD45RA-,PTPRC,HGNC:9666,CCR7-,CCR7,HGNC:1608,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nBlood,Blood,UBERON:0000178,T lymphocytes,T cell,CL:0000084,CD4 T cell effector memory CD45RA,\"effector memory CD4-positive, alpha-beta T cell, terminally differentiated\",CL:0001087,\"CD3D, TRAC, IL4R, STAT1, MAL, SOCS1, IL2, ODC1, PSAT1, WARS, PYCR1, TNF, NME1\",CD3D,CD3d molecule,HGNC:1673,TRAC,T cell receptor alpha constant,HGNC:12029,IL4R,interleukin 4 receptor,HGNC:6015,STAT1,signal transducer and activator of transcription 1,HGNC:11362,MAL,\"mal, T cell differentiation protein\",HGNC:6817,SOCS1,suppressor of cytokine signaling 1,HGNC:19383,IL2,interleukin 2,HGNC:6001,ODC1,ornithine decarboxylase 1,HGNC:8109,PSAT1,phosphoserine aminotransferase 1,HGNC:19129,WARS,tryptophanyl-tRNA synthetase 1,HGNC:12729,PYCR1,pyrroline-5-carboxylate reductase 1,HGNC:9721,TNF,tumor necrosis factor,HGNC:11892,NME1,NME/NM23 nucleoside diphosphate kinase 1,HGNC:7849,CD3+,CD3E,HGNC:1674,CD4+,CD4,HGNC:1678,CD8-,CD8A,HGNC:1706,CD45RA+,PTPRC,HGNC:9666,CCR7-,CCR7,HGNC:1608,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nBlood,Blood,UBERON:0000178,T lymphocytes,T cell,CL:0000084,CD8 naive,\"naive thymus-derived CD8-positive, alpha-beta T cell\",CL:0000900,\"CD3D, TRAC, AQP3, IL7R\",CD3D,CD3d molecule,HGNC:1673,TRAC,T cell receptor alpha constant,HGNC:12029,AQP3,aquaporin 3 (Gill blood group),HGNC:636,IL7R,interleukin 7 receptor,HGNC:6024,,,,,,,,,,,,,,,,,,,,,,,,,,,,CD3+,CD3E,HGNC:1674,CD4-,CD4,HGNC:1678,CD8-,CD8A,HGNC:1706,CD45RA+,PTPRC,HGNC:9666,CCR7+,CCR7,HGNC:1608,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nBlood,Blood,UBERON:0000178,T lymphocytes,T cell,CL:0000084,CD4 T cell memory,\"CD4-positive, alpha-beta memory T cell\",CL:0000897,\"PDZD8, CXCR6, PRF1, CRIP1, ITGA1, GZMB\",PDZD8,PDZ domain containing 8,HGNC:26974,CXCR6,C-X-C motif chemokine receptor 6,HGNC:16647,PRF1,perforin 1,HGNC:9360,CRIP1,cysteine rich protein 1,HGNC:2360,ITGA1,integrin subunit alpha 1,HGNC:6134,GZMB,granzyme B,HGNC:4709,,,,,,,,,,,,,,,,,,,,,,CD3+,CD3E,HGNC:1674,CD4-,CD4,HGNC:1678,CD8-,CD8A,HGNC:1706,CD45RA-,PTPRC,HGNC:9666,CCR7+,CCR7,HGNC:1608,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nBlood,Blood,UBERON:0000178,T lymphocytes,T cell,CL:0000084,CD8 T cell effector memory,\"effector CD8-positive, alpha-beta T cell\",CL:0001050,\"CD3D, TRAC, CCL3, CCL4, HOPX, GZMB\",CD3D,CD3d molecule,HGNC:1673,TRAC,T cell receptor alpha constant,HGNC:12029,CCL3,C-C motif chemokine ligand 3,HGNC:10627,CCL4,C-C motif chemokine ligand 4,HGNC:10630,HOPX,HOP homeobox,HGNC:24961,GZMB,granzyme B,HGNC:4709,,,,,,,,,,,,,,,,,,,,,,CD3+,CD3E,HGNC:1674,CD4-,CD4,HGNC:1678,CD8-,CD8A,HGNC:1706,CD45RA+,PTPRC,HGNC:9666,CCR7-,CCR7,HGNC:1608,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nBlood,Blood,UBERON:0000178,T lymphocytes,T cell,CL:0000084,CD8 T cell effector memory CD45RA,\"effector memory CD8-positive, alpha-beta T cell, terminally differentiated\",CL:0001062,\"CD3D, TRAC, PRF1, HOPX, NKG7, GNLY, IFIT3, KLRD1, CCL5\",CD3D,CD3d molecule,HGNC:1673,TRAC,T cell receptor alpha constant,HGNC:12029,PRF1,perforin 1,HGNC:9360,HOPX,HOP homeobox,HGNC:24961,NKG7,natural killer cell granule protein 7,HGNC:7830,GNLY,granulysin,HGNC:4414,IFIT3,interferon induced protein with tetratricopeptide repeats 3,HGNC:5411,KLRD1,killer cell lectin like receptor D1,HGNC:6378,CCL5,C-C motif chemokine ligand 5,HGNC:10632,,,,,,,,,,,,,CD3+,CD3E,HGNC:1674,CD4-,CD4,HGNC:1678,CD8-,CD8A,HGNC:1706,CD45RA+,PTPRC,HGNC:9666,CCR7-,CCR7,HGNC:1608,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nBlood,Blood,UBERON:0000178,T lymphocytes,T cell,CL:0000084,mature CD8 T cell,mature CD8 single-positive thymocyte,CL:0002437,\"CCL5, GZMH, IL32, CD8A, DUSP2, KLRG1, TRGC2, GZMK\",CCL5,C-C motif chemokine ligand 5,HGNC:10632,GZMH,granzyme H,HGNC:4710,IL32,interleukin 32,HGNC:16830,CD8A,CD8a molecule,HGNC:1706,DUSP2,dual specificity phosphatase 2,HGNC:3068,KLRG1,killer cell lectin like receptor G1,HGNC:6380,TRGC2,T cell receptor gamma constant 2,HGNC:12276,GZMK,granzyme K,HGNC:4711,,,,,,,,,,,,,,,,CD3+,CD3E,HGNC:1674,CD8+,CD8A,HGNC:1706,CD4-,CD4,HGNC:1678,CD27+/-,CD27,HGNC:11922,CD38+,CD38,HGNC:1667,CD45RA+/-,PTPRC,HGNC:9666,CD62L+/-,SELL,HGNC:10720,CCR7+/-,CCR7,HGNC:1608,,,,,,,,,,,,,,,,,,\r\nBlood,Blood,UBERON:0000178,NK lymphocytes,mature NK T cell,CL:0000814,CD56 bright Natural killer,\"CD16-negative, CD56-bright natural killer cell, human\",CL:0000938,\"TRDC, KLRB1, CLIC3, CST7, XCL1, GZMK\",TRDC,T cell receptor delta constant,HGNC:12253,KLRB1,killer cell lectin like receptor B1,HGNC:6373,CLIC3,chloride intracellular channel 3,HGNC:2064,CST7,cystatin F,HGNC:2479,XCL1,X-C motif chemokine ligand 1,HGNC:10645,GZMK,granzyme K,HGNC:4711,,,,,,,,,,,,,,,,,,,,,,CD3-,CD3E,HGNC:1674,CD19-,CD19,HGNC:1633,CD20-,MS4A1,HGNC:7315,CD56hi,NCAM1,HGNC:7656,CD16-,FCGR3A,HGNC:3619,,,,,,,,,,,,,,,,,,,,,,,,,,,\r\nBlood,Blood,UBERON:0000178,NK lymphocytes,mature NK T cell,CL:0000814,mature Natural killer,mature natural killer cell,CL:0000824,\"TRDC, KLRB1, CLIC3, CST7, GZMA, GZMB, PRF1, FCGR3A\",TRDC,T cell receptor delta constant,HGNC:12253,KLRB1,killer cell lectin like receptor B1,HGNC:6373,CLIC3,chloride intracellular channel 3,HGNC:2064,CST7,cystatin F,HGNC:2479,GZMA,granzyme A,HGNC:4708,GZMB,granzyme B,HGNC:4709,PRF1,perforin 1,HGNC:9360,FCGR3A,Fc gamma receptor IIIa,HGNC:3619,,,,,,,,,,,,,,,,CD3-,CD3E,HGNC:1674,CD19-,CD19,HGNC:1633,CD20-,MS4A1,HGNC:7315,CD56+,NCAM1,HGNC:7656,CD16+,FCGR3A,HGNC:3619,CD57+/-,B3GAT1,HGNC:921,,,,,,,,,,,,,,,,,,,,,,,,\r\nBlood,Blood,UBERON:0000178,T lymphocytes,T cell,CL:0000084,T regulatory,regulatory T cell,CL:0000815,\"TRAC, TRBC1, IL7R, TRAT1, LTB, AQP3, FOXP3, TNFRSF25, TIGIT, CCR6, TNFRSF4\",TRAC,T cell receptor alpha constant,HGNC:12029,TRBC1,T cell receptor beta constant 1,HGNC:12156,IL7R,interleukin 7 receptor,HGNC:6024,TRAT1,T cell receptor associated transmembrane adaptor 1,HGNC:30698,LTB,lymphotoxin beta,HGNC:6711,AQP3,aquaporin 3 (Gill blood group),HGNC:636,FOXP3,forkhead box P3,HGNC:6106,TNFRSF25,TNF receptor superfamily member 25,HGNC:11910,TIGIT,T cell immunoreceptor with Ig and ITIM domains,HGNC:26838,CCR6,C-C motif chemokine receptor 6,HGNC:1607,TNFRSF4,TNF receptor superfamily member 4,HGNC:11918,,,,,,,CD3+,CD3E,HGNC:1674,CD4+/-,CD4,HGNC:1678,CD8+/-,CD8A,HGNC:1706,CD25+,IL2RA,HGNC:6008,FOXP3+,FOXP3,HGNC:6106,CTLA4+,CTLA4,HGNC:2505,,,,,,,,,,,,,,,,,,,,,,,,", "parsed": [["Anatomical Structures, Cell Types and Biomarkers Table for Blood", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["Author Name(s):", "Muzlifah A. Haniffa; Laura Jardine; Sarah A. Teichmann", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["Author ORCID(s):", "0000-0002-3927-2084; 0000-0003-4495-8205; 0000-0002-6294-6366", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["Reviewer(s):", "Elisa Laurenti; Bertie Gottgens; Andrea J. Radtke; Rebecca T. Beuschel; Ellen M. Quardokus", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["Reviewer ORCID(s):", "0000-0002-9917-9092;0000-0001-6302-5705; 0000-0003-4379-8967;0000-0002-3882-457X; 0000-0001-7655-4833", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["General Publication(s):", "DOI: 10.1126/science.aah4573; DOI: 10.1126/science.aay3224; DOI: 10.1038/s41586-019-1652-y", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["Data DOI:", "https://doi.org/10.48539/HBM785.CGSG.458", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["Date:", "December 15, 2022", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["Version Number:", "v1.3", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", ""], ["AS/1", "AS/1/LABEL", "AS/1/ID", "CT/1", "CT/1/LABEL", "CT/1/ID", "CT/2", "CT/2/LABEL", "CT/2/ID", "All Gene Biomarkers", "BGene/1", "BGene/1/LABEL", "BGene/1/ID", "BGene/2", "BGene/2/LABEL", "BGene/2/ID", "BGene/3", "BGene/3/LABEL", "BGene/3/ID", "BGene/4", "BGene/4/LABEL", "BGene/4/ID", "BGene/5", "BGene/5/LABEL", "BGene/5/ID", "BGene/6", "BGene/6/LABEL", "BGene/6/ID", "BGene/7", "BGene/7/LABEL", "BGene/7/ID", "BGene/8", "BGene/8/LABEL", "BGene/8/ID", "BGene/9", "BGene/9/LABEL", "BGene/9/ID", "BGene/10", "BGene/10/LABEL", "BGene/10/ID", "BGene/11", "BGene/11/LABEL", "BGene/11/ID", "BGene/12", "BGene/12/LABEL", "BGene/12/ID", "BGene/13", "BGene/13/LABEL", "BGene/13/ID", "BProtein/1", "BProtein/1/LABEL", "BProtein/1/ID", "BProtein/2", "BProtein/2/LABEL", "BProtein/2/ID", "BProtein/3", "BProtein/3/LABEL", "BProtein/3/ID", "BProtein/4", "BProtein/4/LABEL", "BProtein/4/ID", "BProtein/5", "BProtein/5/LABEL", "BProtein/5/ID", "BProtein/6", "BProtein/6/LABEL", "BProtein/6/ID", "BProtein/7", "BProtein/7/LABEL", "BProtein/7/ID", "BProtein/8", "BProtein/8/LABEL", "BProtein/8/ID", "BProtein/9", "BProtein/9/LABEL", "BProtein/9/ID", "BProtein/10", "BProtein/10/LABEL", "BProtein/10/ID", "BProtein/11", "BProtein/11/LABEL", "BProtein/11/ID", "FTU/1", "FTU/1/LABEL", "FTU/1/ID", "REF/1", "REF/1/DOI", "REF/1/NOTES", "REF/2", "REF/2/DOI", "REF/2/NOTES"], ["Blood", "Blood", "UBERON:0000178", "B lineage", "lymphocyte of B lineage", "CL:0000945", "immature B cell", "immature B cell", "CL:0000816", "CD19, PAX5, IGHM, MS4A1", "CD19", "CD19 molecule", "HGNC:1633", "PAX5", "paired box 5", "HGNC:8619", "IGHM", "immunoglobulin heavy constant mu", "HGNC:5541", "MS4A1", "membrane spanning 4-domains A1", "HGNC:7315", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "CD19+", "CD19", "HGNC:1633", "CD10+", "MME", "HGNC:7154", "CD20+", "MS4A1", "HGNC:7315", "IgM+/-", "IGHM", "HGNC:5541", "IgD+/-", "IGHD", "HGNC:5480", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "DOI: 10.3389/fimmu.2012.00302", "", "", "", ""], ["Blood", "Blood", "UBERON:0000178", "B lineage", "lymphocyte of B lineage", "CL:0000945", "memory B cell", "memory B cell", "CL:0000787", "CD19, MS4A1, IGHA1, IGHG1, CD82, SELL, CD27", "CD19", "CD19 molecule", "HGNC:1633", "MS4A1", "membrane spanning 4-domains A1", "HGNC:7315", "IGHA1", "immunoglobulin heavy constant alpha 1", "HGNC:5478", "IGHG1", "immunoglobulin heavy constant gamma 1 (G1m marker)", "HGNC:5525", "CD82", "CD82 molecule", "HGNC:6210", "SELL", "selectin L", "HGNC:10720", "CD27", "CD27 molecule", "HGNC:11922", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "CD19+", "CD19", "HGNC:1633", "CD20+", "MS4A1", "HGNC:7315", "CD21+", "CR2", "HGNC:2336", "CD22+", "CD22", "HGNC:1643", "CD27+", "CD27", "HGNC:11922", "IgM+/-", "IGHM", "HGNC:5541", "IgD+/-", "IGHD", "HGNC:5480", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "DOI: 10.1002/jcla.20001", "", "", "", ""], ["Blood", "Blood", "UBERON:0000178", "B lineage", "lymphocyte of B lineage", "CL:0000945", "naive B cell", "naive B cell", "CL:0000788", "CD19, PAX5, IGHM, MS4A1, CD40, FCER2", "CD19", "CD19 molecule", "HGNC:1633", "PAX5", "paired box 5", "HGNC:8619", "IGHM", "immunoglobulin heavy constant mu", "HGNC:5541", "MS4A1", "membrane spanning 4-domains A1", "HGNC:7315", "CD40", "CD40 molecule", "HGNC:11919", "FCER2", "Fc epsilon receptor II", "HGNC:3612", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "CD19+", "CD19", "HGNC:1633", "CD20+", "MS4A1", "HGNC:7315", "CD21+", "CR2", "HGNC:2336", "IgD+", "IGHD", "HGNC:5480", "CD27-", "CD27", "HGNC:11922", "CD10-", "MME", "HGNC:7154", "CD38+/lo", "CD38", "HGNC:1667", "CD24+/lo", "CD24", "HGNC:1645", "", "", "", "", "", "", "", "", "", "", "", "", "", "DOI: 10.1038/s41467-019-12464-3", "", "", "", ""], ["Blood", "Blood", "UBERON:0000178", "B lineage", "lymphocyte of B lineage", "CL:0000945", "transitional B cell", "transitional stage B cell", "CL:0000818", "IGLL5, SOX4, BCL7A, TCL1A, FCRLA, CD24", "IGLL5", "immunoglobulin lambda like polypeptide 5", "HGNC:38476", "SOX4", "SRY-box transcription factor 4", "HGNC:11200", "BCL7A", "BAF chromatin remodeling complex subunit BCL7A", "HGNC:1004", "TCL1A", "TCL1 family AKT coactivator A", "HGNC:11648", "FCRLA", "Fc receptor like A", "HGNC:18504", "CD24", "CD24 molecule", "HGNC:1645", "", "", 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"name": "Fc epsilon receptor Ig", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "FLT3", "name": "fms related receptor tyrosine kinase 3", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "HLA-DRB1", "name": "major histocompatibility complex, class II, DR beta 1", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "PTPRC", "name": "protein tyrosine phosphatase receptor type C", "publication": "", "publication_titles": ""}], "CL:0002399": [{"tissue": "respiratory system", "symbol": "CD1C", "name": "CD1c molecule", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "CD53", "name": "CD53 molecule", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "CLEC10A", "name": "C-type lectin domain containing 10A", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "CLEC7A", "name": "C-type lectin domain containing 7A", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "CORO1A", "name": "coronin 1A", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "FCER1G", "name": "Fc epsilon receptor Ig", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "FCGR2B", "name": "Fc fragment of IgG receptor IIb", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "HLA-DRB1", "name": "major histocompatibility complex, class II, DR beta 1", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "PTPRC", "name": "protein tyrosine phosphatase receptor type C", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "CD1C", "name": "CD1c molecule", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "CD53", "name": "CD53 molecule", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "CLEC10A", "name": "C-type lectin domain containing 10A", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "CLEC7A", "name": "C-type lectin domain containing 7A", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "CORO1A", "name": "coronin 1A", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "FCER1G", "name": "Fc epsilon receptor Ig", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "FCGR2B", "name": "Fc fragment of IgG receptor IIb", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "HLA-DRB1", "name": "major histocompatibility complex, class II, DR beta 1", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "PTPRC", "name": "protein tyrosine phosphatase receptor type C", "publication": "", "publication_titles": ""}], "CL:4033045": [{"tissue": "respiratory system", "symbol": "CCL19", "name": "C-C motif chemokine ligand 19", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "CCR7", "name": "C-C motif chemokine receptor 7", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "CD53", "name": "CD53 molecule", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "CLEC7A", "name": "C-type lectin domain containing 7A", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "CORO1A", "name": "coronin 1A", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "FCER1G", "name": "Fc epsilon receptor Ig", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "LAD1", "name": "ladinin 1", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "PTPRC", "name": "protein tyrosine phosphatase receptor type C", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "CCL19", "name": "C-C motif chemokine ligand 19", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "CCR7", "name": "C-C motif chemokine receptor 7", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "CD53", "name": "CD53 molecule", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "CLEC7A", "name": "C-type lectin domain containing 7A", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "CORO1A", "name": "coronin 1A", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "FCER1G", "name": "Fc epsilon receptor Ig", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "LAD1", "name": "ladinin 1", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "PTPRC", "name": "protein tyrosine phosphatase receptor type C", "publication": "", "publication_titles": ""}], "CL:0000784": [{"tissue": "respiratory system", "symbol": "CD53", "name": "CD53 molecule", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "CLEC4C", "name": "C-type lectin domain family 4 member C", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "CLEC7A", "name": "C-type lectin domain containing 7A", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "CORO1A", "name": "coronin 1A", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "CXCR3", "name": "C-X-C motif chemokine receptor 3", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "FCER1G", "name": "Fc epsilon receptor Ig", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "HLA-DRB1", "name": "major histocompatibility complex, class II, DR beta 1", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "NRP1", "name": "neuropilin 1", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "PTPRC", "name": "protein tyrosine phosphatase receptor type C", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "CD53", "name": "CD53 molecule", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "CLEC4C", "name": "C-type lectin domain family 4 member C", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "CLEC7A", "name": "C-type lectin domain containing 7A", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "CORO1A", "name": "coronin 1A", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "CXCR3", "name": "C-X-C motif chemokine receptor 3", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "FCER1G", "name": "Fc epsilon receptor Ig", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "HLA-DRB1", "name": "major histocompatibility complex, class II, DR beta 1", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "NRP1", "name": "neuropilin 1", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "PTPRC", "name": "protein tyrosine phosphatase receptor type C", "publication": "", "publication_titles": ""}], "CL:0000786": [{"tissue": "respiratory system", "symbol": "BANK1", "name": "B cell scaffold protein with ankyrin repeats 1", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "CD38", "name": "CD38 molecule", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "CD53", "name": "CD53 molecule", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "CORO1A", "name": "coronin 1A", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "DERL3", "name": "derlin 3", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "MS4A1", "name": "membrane spanning 4-domains A1", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "MZB1", "name": "marginal zone B and B1 cell specific protein", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "PTPRC", "name": "protein tyrosine phosphatase receptor type C", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "SDC1", "name": "syndecan 1", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "BANK1", "name": "B cell scaffold protein with ankyrin repeats 1", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "CD38", "name": "CD38 molecule", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "CD53", "name": "CD53 molecule", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "CORO1A", "name": "coronin 1A", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "DERL3", "name": "derlin 3", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "MS4A1", "name": "membrane spanning 4-domains A1", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "MZB1", "name": "marginal zone B and B1 cell specific protein", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "PTPRC", "name": "protein tyrosine phosphatase receptor type C", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "SDC1", "name": "syndecan 1", "publication": "", "publication_titles": ""}], "CL:0000236": [{"tissue": "respiratory system", "symbol": "BANK1", "name": "B cell scaffold protein with ankyrin repeats 1", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "CD22", "name": "CD22 molecule", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "CD53", "name": "CD53 molecule", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "CD79A", "name": "CD79a molecule", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "CORO1A", "name": "coronin 1A", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "MS4A1", "name": "membrane spanning 4-domains A1", "publication": "", "publication_titles": ""}, {"tissue": "respiratory system", "symbol": "PTPRC", "name": "protein tyrosine phosphatase receptor type C", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "BANK1", "name": "B cell scaffold protein with ankyrin repeats 1", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "CD22", "name": "CD22 molecule", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "CD53", "name": "CD53 molecule", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "CD79A", "name": "CD79a molecule", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "CORO1A", "name": "coronin 1A", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "MS4A1", "name": "membrane spanning 4-domains A1", "publication": "", "publication_titles": ""}, {"tissue": "All Tissues", "symbol": "PTPRC", "name": "protein tyrosine phosphatase receptor type C", "publication": "", "publication_titles": ""}]} \ No newline at end of file diff --git a/tests/unit/backend/cellguide/pipeline/fixtures/cell_metadata.json b/tests/unit/backend/cellguide/pipeline/fixtures/cell_metadata.json index 0f5561a3c39be..cee93d9beaf9c 100644 --- a/tests/unit/backend/cellguide/pipeline/fixtures/cell_metadata.json +++ b/tests/unit/backend/cellguide/pipeline/fixtures/cell_metadata.json @@ -1 +1 @@ -{"CL:0000066": {"name": "epithelial cell", "id": "CL:0000066", "clDescription": "A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where apical part is directed towards the lumen and the basal part to the basal lamina.", "synonyms": ["epitheliocyte"]}, "CL:0000084": {"name": "T cell", "id": "CL:0000084", "clDescription": "A type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex.", "synonyms": ["T lymphocyte", "T-cell", "T-lymphocyte"]}, "CL:0000097": {"name": "mast cell", "id": "CL:0000097", "clDescription": "A cell that is found in almost all tissues containing numerous basophilic granules and capable of releasing large amounts of histamine and heparin upon activation. Progenitors leave bone marrow and mature in connective and mucosal tissue. Mature mast cells are found in all tissues, except the bloodstream. Their phenotype is CD117-high, CD123-negative, CD193-positive, CD200R3-positive, and FceRI-high. Stem-cell factor (KIT-ligand; SCF) is the main controlling signal of their survival and development.", "synonyms": ["histaminocyte", "labrocyte", "mastocyte"]}, "CL:0000115": {"name": "endothelial cell", "id": "CL:0000115", "clDescription": "An endothelial cell comprises the outermost layer or lining of anatomical structures and can be squamous or cuboidal. In mammals, endothelial cell has vimentin filaments and is derived from the mesoderm.", "synonyms": ["endotheliocyte"]}, "CL:0000148": {"name": "melanocyte", "id": "CL:0000148", "clDescription": "A pigment cell derived from the neural crest. Contains melanin-filled pigment granules, which gives a brown to black appearance.", "synonyms": []}, "CL:0000169": {"name": "type B pancreatic cell", "id": "CL:0000169", "clDescription": "A cell that secretes insulin and is located towards the center of the islets of Langerhans.", "synonyms": ["B-cell of pancreatic islet", "beta cell of pancreatic islet", "insulin-secreting cell", "pancreatic B cell", "pancreatic B-cell", "pancreatic beta cell", "pancreatic islet core", "type B enteroendocrine cell"]}, "CL:0000171": {"name": "pancreatic A cell", "id": "CL:0000171", "clDescription": "A type of enteocrine cell found in the periphery of the islets of Langerhans that secretes glucagon.", "synonyms": ["alpha cell of islet of Langerhans", "pancreatic alpha cell"]}, "CL:0000173": {"name": "pancreatic D cell", "id": "CL:0000173", "clDescription": "A D cell located in the pancreas. Peripherally placed within the islets like type A cells; contains somatostatin.", "synonyms": ["D-cell of pancreatic islet", "delta cell of islet", "delta cell of pancreatic islet", "pancreatic D-cell", "pancreatic delta cell", "somatostatin-secreting pancreatic cell"]}, "CL:0000187": {"name": "muscle cell", "id": "CL:0000187", "clDescription": "A mature contractile cell, commonly known as a myocyte. This cell has as part of its cytoplasm myofibrils organized in various patterns.", "synonyms": ["muscle fiber", "myocyte"]}, "CL:0000188": {"name": "cell of skeletal muscle", "id": "CL:0000188", "clDescription": "A somatic cell located in skeletal muscle.", "synonyms": ["skeletal muscle cell"]}, "CL:0000192": {"name": "smooth muscle cell", "id": "CL:0000192", "clDescription": "A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast).", "synonyms": ["SMCs", "myocytes, smooth muscle", "smooth muscle fiber"]}, "CL:0000235": {"name": "macrophage", "id": "CL:0000235", "clDescription": "A mononuclear phagocyte present in variety of tissues, typically differentiated from monocytes, capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells.", "synonyms": ["histiocyte"]}, "CL:0000453": {"name": "Langerhans cell", "id": "CL:0000453", "clDescription": "Langerhans cell is a conventional dendritic cell that has plasma membrane part CD207. A Langerhans cell is a stellate dendritic cell of myeloid origin, that appears clear on light microscopy and has a dark-staining, indented nucleus and characteristic inclusions (Birbeck granules) in the cytoplasm; Langerhans cells are found principally in the stratum spinosum of the epidermis, but they also occur in other stratified epithelia and have been identified in the lung, lymph nodes, spleen, and thymus.", "synonyms": ["LC"]}, "CL:0000492": {"name": "CD4-positive helper T cell", "id": "CL:0000492", "clDescription": "A CD4-positive, alpha-beta T cell that cooperates with other lymphocytes via direct contact or cytokine release to initiate a variety of immune functions.", "synonyms": ["CD4-positive T-helper cell", "CD4-positive helper T lymphocyte", "CD4-positive helper T-cell", "CD4-positive helper T-lymphocyte"]}, "CL:0000499": {"name": "stromal cell", "id": "CL:0000499", "clDescription": "A connective tissue cell of an organ found in the loose connective tissue. These are most often associated with the uterine mucosa and the ovary as well as the hematopoietic system and elsewhere.", "synonyms": []}, "CL:0000738": {"name": "leukocyte", "id": "CL:0000738", "clDescription": "An achromatic cell of the myeloid or lymphoid lineages capable of ameboid movement, found in blood or other tissue.", "synonyms": ["leucocyte", "white blood cell"]}, "CL:0000786": {"name": "plasma cell", "id": "CL:0000786", "clDescription": "A terminally differentiated, post-mitotic, antibody secreting cell of the B cell lineage with the phenotype CD138-positive, surface immunonoglobulin-negative, and MHC Class II-negative. Plasma cells are oval or round with extensive rough endoplasmic reticulum, a well-developed Golgi apparatus, and a round nucleus having a characteristic cartwheel heterochromatin pattern and are devoted to producing large amounts of immunoglobulin.", "synonyms": ["plasma B cell", "plasma B-cell", "plasmacyte", "plasmocyte"]}, "CL:0000787": {"name": "memory B cell", "id": "CL:0000787", "clDescription": "A memory B cell is a mature B cell that is long-lived, readily activated upon re-encounter of its antigenic determinant, and has been selected for expression of higher affinity immunoglobulin. This cell type has the phenotype CD19-positive, CD20-positive, MHC Class II-positive, and CD138-negative.", "synonyms": ["memory B lymphocyte", "memory B-cell", "memory B-lymphocyte"]}, "CL:0000788": {"name": "naive B cell", "id": "CL:0000788", "clDescription": "A naive B cell is a mature B cell that has the phenotype surface IgD-positive, surface IgM-positive, CD20-positive, CD27-negative and that has not yet been activated by antigen in the periphery.", "synonyms": ["naive B lymphocyte", "naive B-cell", "naive B-lymphocyte"]}, "CL:0000794": {"name": "CD8-positive, alpha-beta cytotoxic T cell", "id": "CL:0000794", "clDescription": "A CD8-positive, alpha-beta T cell that is capable of killing target cells in an antigen specific manner with the phenotype perforin-positive and granzyme B-positive.", "synonyms": ["CD8-positive, alpha-beta cytotoxic T lymphocyte", "CD8-positive, alpha-beta cytotoxic T-cell", "CD8-positive, alpha-beta cytotoxic T-lymphocyte"]}, "CL:0000814": {"name": "mature NK T cell", "id": "CL:0000814", "clDescription": "A mature alpha-beta T cell of a distinct lineage that bears natural killer markers and a T cell receptor specific for a limited set of ligands. NK T cells have activation and regulatory roles particularly early in an immune response.", "synonyms": ["mature NK T lymphocyte", "mature NK T-cell", "mature NK T-lymphocyte", "mature NKT cell", "mature natural killer T cell", "mature natural killer T lymphocyte", "mature natural killer T-cell", "mature natural killer T-lymphocyte"]}, "CL:0000815": {"name": "regulatory T cell", "id": "CL:0000815", "clDescription": "A T cell which regulates overall immune responses as well as the responses of other T cell subsets through direct cell-cell contact and cytokine release.", "synonyms": ["Treg", "regulatory T lymphocyte", "regulatory T-cell", "regulatory T-lymphocyte"]}, "CL:0000895": {"name": "naive thymus-derived CD4-positive, alpha-beta T cell", "id": "CL:0000895", "clDescription": "An antigen inexperienced CD4-positive, alpha-beta T cell with the phenotype CCR7-positive, CD127-positive and CD62L-positive. This cell type develops in the thymus. This cell type is also described as being CD25-negative, CD62L-high, and CD44-low.", "synonyms": ["T.4Nve.Sp", "Th0", "naive thymus-derived CD4-positive, alpha-beta T lymphocyte", "naive thymus-derived CD4-positive, alpha-beta T-cell", "naive thymus-derived CD4-positive, alpha-beta T-lymphocyte"]}, "CL:0000897": {"name": "CD4-positive, alpha-beta memory T cell", "id": "CL:0000897", "clDescription": "A CD4-positive, alpha-beta T cell that has differentiated into a memory T cell.", "synonyms": ["CD4-positive, alpha-beta memory T lymphocyte", "CD4-positive, alpha-beta memory T-cell", "CD4-positive, alpha-beta memory T-lymphocyte"]}, "CL:0000900": {"name": "naive thymus-derived CD8-positive, alpha-beta T cell", "id": "CL:0000900", "clDescription": "A CD8-positive, alpha-beta T cell that has not experienced activation via antigen contact and has the phenotype CD45RA-positive, CCR7-positive and CD127-positive. This cell type is also described as being CD25-negative, CD62L-high and CD44-low.", "synonyms": ["naive thymus-dervied CD8-positive, alpha-beta T lymphocyte", "naive thymus-dervied CD8-positive, alpha-beta T-cell", "naive thymus-dervied CD8-positive, alpha-beta T-lymphocyte"]}, "CL:0000909": {"name": "CD8-positive, alpha-beta memory T cell", "id": "CL:0000909", "clDescription": "A CD8-positive, alpha-beta T cell that has differentiated into a memory T cell.", "synonyms": ["CD8-positive, alpha-beta memory T lymphocyte", "CD8-positive, alpha-beta memory T-cell", "CD8-positive, alpha-beta memory T-lymphocyte"]}, "CL:0002064": {"name": "pancreatic acinar cell", "id": "CL:0002064", "clDescription": "A secretory cell found in pancreatic acini that secretes digestive enzymes and mucins. This cell is a typical zymogenic cell, have a basal nucleus and basophilic cytoplasm consisting of regular arrays of granular endoplasmic reticulum with mitochondria and dense secretory granules.", "synonyms": ["acinar cell of pancreas"]}, "CL:0002079": {"name": "pancreatic ductal cell", "id": "CL:0002079", "clDescription": "Epithelial cell found in the ducts of the pancreas. This cell type contributes to the high luminal pH.", "synonyms": []}, "CL:0002275": {"name": "pancreatic PP cell", "id": "CL:0002275", "clDescription": "A PP cell located in the islets of the pancreas.", "synonyms": ["PP cell of pancreatic islet", "PP-cell of pancreatic islet", "pancreatic polypeptide-secreting cell"]}, "CL:0002394": {"name": "CD141-positive myeloid dendritic cell", "id": "CL:0002394", "clDescription": "A myeloid dendritic cell found in the blood, lymph nodes, tonsil, bone marrow, and spleen that is CD141-positive (BDCA-3), XCR1-positive, and Clec9A-positive. This cell-type can cross-present antigen to CD8-positive T cells and can produce inteferon-beta.", "synonyms": []}, "CL:0002399": {"name": "CD1c-positive myeloid dendritic cell", "id": "CL:0002399", "clDescription": "A myeloid dendritic cell found in the blood that is CD1c-positive.", "synonyms": []}, "CL:0002410": {"name": "pancreatic stellate cell", "id": "CL:0002410", "clDescription": "A cell that is found in the periacinar space of the exocrine pancreas and in perivascular and periductal regions of the pancreas, and has long cytoplasmic processes that encircle the base of the acinus. Expresses several intermediate filament proteins including vimentin and nestin. Shares many of the characteristics of hepatatic stellate cells, but not stellate cells of the central nervous system. Upon activation, this cell type undergoes morphological and gene expression changes that make the cell suggestive of being a type of myofibroblast.", "synonyms": ["PaSC", "pancreas stellate cell"]}, "CL:0000000": {"name": "cell", "id": "CL:0000000", "clDescription": "A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane.", "synonyms": []}, "CL:0000057": {"name": "fibroblast", "id": "CL:0000057", "clDescription": "A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules. Flattened and irregular in outline with branching processes; appear fusiform or spindle-shaped.", "synonyms": []}, "CL:0000255": {"name": "eukaryotic cell", "id": "CL:0000255", "synonyms": []}, "CL:0000152": {"name": "exocrine cell", "id": "CL:0000152", "clDescription": "A cell of an exocrine gland; i.e. a gland that discharges its secretion via a duct.", "synonyms": []}, "CL:0000988": {"name": "hematopoietic cell", "id": "CL:0000988", "clDescription": "A cell of a hematopoietic lineage.", "synonyms": ["haematopoietic cell", "haemopoietic cell", "hemopoietic cell"]}, "CL:0000763": {"name": "myeloid cell", "id": "CL:0000763", "clDescription": "A cell of the monocyte, granulocyte, mast cell, megakaryocyte, or erythroid lineage.", "synonyms": []}, "CL:0000145": {"name": "professional antigen presenting cell", "id": "CL:0000145", "clDescription": "A cell capable of processing and presenting lipid and protein antigens to T cells in order to initiate an immune response.", "synonyms": []}, "CL:0002274": {"name": "histamine secreting cell", "id": "CL:0002274", "clDescription": "A cell type that secretes histamine.", "synonyms": []}, "CL:0000151": {"name": "secretory cell", "id": "CL:0000151", "clDescription": "A cell that specializes in controlled release of one or more substances.", "synonyms": []}, "CL:0002320": {"name": "connective tissue cell", "id": "CL:0002320", "clDescription": "A cell of the supporting or framework tissue of the body, arising chiefly from the embryonic mesoderm and including adipose tissue, cartilage, and bone.", "synonyms": []}, "CL:0000068": {"name": "duct epithelial cell", "id": "CL:0000068", "clDescription": "An epithelial cell that is part of a duct.", "synonyms": []}, "CL:0000069": {"name": "branched duct epithelial cell", "id": "CL:0000069", "synonyms": []}, "CL:0002078": {"name": "meso-epithelial cell", "id": "CL:0002078", "clDescription": "Epithelial cell derived from mesoderm or mesenchyme.", "synonyms": ["epithelial mesenchymal cell"]}, "CL:0000215": {"name": "barrier cell", "id": "CL:0000215", "clDescription": "A cell whose primary function is to prevent the transport of stuff across compartments.", "synonyms": []}, "CL:0000213": {"name": "lining cell", "id": "CL:0000213", "clDescription": "A cell within an epithelial cell sheet whose main function is to act as an internal or external covering for a tissue or an organism.", "synonyms": ["boundary cell"]}, "CL:0000083": {"name": "epithelial cell of pancreas", "id": "CL:0000083", "clDescription": "An epithelial cell of the pancreas.", "synonyms": ["pancreas epithelial cell", "pancreatic epithelial cell"]}, "CL:0000542": {"name": "lymphocyte", "id": "CL:0000542", "clDescription": "A lymphocyte is a leukocyte commonly found in the blood and lymph that has the characteristics of a large nucleus, a neutral staining cytoplasm, and prominent heterochromatin.", "synonyms": []}, "CL:0000945": {"name": "lymphocyte of B lineage", "id": "CL:0000945", "clDescription": "A lymphocyte of B lineage with the commitment to express an immunoglobulin complex.", "synonyms": []}, "CL:0000766": {"name": "myeloid leukocyte", "id": "CL:0000766", "clDescription": "A cell of the monocyte, granulocyte, or mast cell lineage.", "synonyms": []}, "CL:0000518": {"name": "phagocyte (sensu Vertebrata)", "id": "CL:0000518", "clDescription": "A phagocyte in vertebrates that is able to phagocytosis.", "synonyms": []}, "CL:0000234": {"name": "phagocyte", "id": "CL:0000234", "clDescription": "Any cell capable of ingesting particulate matter via phagocytosis.", "synonyms": []}, "CL:0000113": {"name": "mononuclear phagocyte", "id": "CL:0000113", "clDescription": "A vertebrate phagocyte with a single nucleus.", "synonyms": []}, "CL:0000842": {"name": "mononuclear cell", "id": "CL:0000842", "clDescription": "A leukocyte with a single non-segmented nucleus in the mature form.", "synonyms": ["mononuclear leukocyte"]}, "CL:0000325": {"name": "stuff accumulating cell", "id": "CL:0000325", "clDescription": "A cell that is specialised to accumulate a particular substance(s).", "synonyms": []}, "CL:0000147": {"name": "pigment cell", "id": "CL:0000147", "clDescription": "A pigment cell is a cell that contains pigment granules.", "synonyms": ["chromatocyte", "chromatophore"]}, "CL:0000150": {"name": "glandular epithelial cell", "id": "CL:0000150", "clDescription": "A specialized epithelial cell that is capable of synthesizing and secreting certain biomolecules.", "synonyms": []}, "CL:0000154": {"name": "protein secreting cell", "id": "CL:0000154", "synonyms": []}, "CL:0000163": {"name": "endocrine cell", "id": "CL:0000163", "clDescription": "A cell of an endocrine gland, ductless glands that secrete substances which are released directly into the circulation and which influence metabolism and other body functions.", "synonyms": ["endocrinocyte"]}, "CL:0000164": {"name": "enteroendocrine cell", "id": "CL:0000164", "clDescription": "An endocrine cell that is located in the epithelium of the gastrointestinal tract or in the pancreas.", "synonyms": []}, "CL:0000167": {"name": "peptide hormone secreting cell", "id": "CL:0000167", "synonyms": []}, "CL:0000168": {"name": "insulin secreting cell", "id": "CL:0000168", "synonyms": []}, "CL:0008024": {"name": "pancreatic endocrine cell", "id": "CL:0008024", "clDescription": "An endocrine cell that is part of the pancreas.", "synonyms": []}, "CL:0000170": {"name": "glucagon secreting cell", "id": "CL:0000170", "clDescription": "A cell that secretes glucagon.", "synonyms": ["glucagon-secreting cell"]}, "CL:0002067": {"name": "type A enteroendocrine cell", "id": "CL:0002067", "clDescription": "An enteroendocrine cell that produces glucagon.", "synonyms": []}, "CL:0000172": {"name": "somatostatin secreting cell", "id": "CL:0000172", "synonyms": []}, "CL:0000502": {"name": "type D enteroendocrine cell", "id": "CL:0000502", "clDescription": "A cell found throughout the gastrointestinal tract and in the pancreas. They secrete somatostatin in both an endocrine and paracrine manner. Somatostatin inhibits gastrin, cholecystokinin, insulin, glucagon, pancreatic enzymes, and gastric hydrochloric acid. A variety of substances which inhibit gastric acid secretion (vasoactive intestinal peptide, calcitonin gene-related peptide, cholecystokinin, beta-adrenergic agonists, and gastric inhibitory peptide) are thought to act by releasing somatostatin.", "synonyms": ["D cell"]}, "CL:0000183": {"name": "contractile cell", "id": "CL:0000183", "clDescription": "A cell whose primary function is to shorten.", "synonyms": []}, "CL:0000393": {"name": "electrically responsive cell", "id": "CL:0000393", "clDescription": "A cell whose function is determined by its response to an electric signal.", "synonyms": []}, "CL:0008000": {"name": "non-striated muscle cell", "id": "CL:0008000", "clDescription": "Any muscle cell in which the fibers are not organised into sarcomeres.", "synonyms": []}, "CL:0008007": {"name": "visceral muscle cell", "id": "CL:0008007", "clDescription": "A muscle cell that is part of some visceral muscle.", "synonyms": []}, "CL:0000211": {"name": "electrically active cell", "id": "CL:0000211", "clDescription": "A cell whose function is determined by the generation or the reception of an electric signal.", "synonyms": []}, "CL:0000219": {"name": "motile cell", "id": "CL:0000219", "clDescription": "A cell that moves by its own activities.", "synonyms": []}, "CL:0002242": {"name": "nucleate cell", "id": "CL:0002242", "clDescription": "A cell containing at least one nucleus.", "synonyms": []}, "CL:0000226": {"name": "single nucleate cell", "id": "CL:0000226", "clDescription": "A cell with a single nucleus.", "synonyms": []}, "CL:0000473": {"name": "defensive cell", "id": "CL:0000473", "clDescription": "A cell whose primary function is to protect the organism.", "synonyms": []}, "CL:0000236": {"name": "B cell", "id": "CL:0000236", "clDescription": "A lymphocyte of B lineage that is capable of B cell mediated immunity.", "synonyms": ["B lymphocyte", "B-cell", "B-lymphocyte"]}, "CL:0000457": {"name": "biogenic amine secreting cell", "id": "CL:0000457", "synonyms": []}, "CL:0000451": {"name": "dendritic cell", "id": "CL:0000451", "clDescription": "A cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation. These cells are lineage negative (CD3-negative, CD19-negative, CD34-negative, and CD56-negative).", "synonyms": []}, "CL:0000990": {"name": "conventional dendritic cell", "id": "CL:0000990", "clDescription": "Conventional dendritic cell is a dendritic cell that is CD11c-high.", "synonyms": ["DC1", "cDC", "dendritic reticular cell", "type 1 DC"]}, "CL:0000624": {"name": "CD4-positive, alpha-beta T cell", "id": "CL:0000624", "clDescription": "A mature alpha-beta T cell that expresses an alpha-beta T cell receptor and the CD4 coreceptor.", "synonyms": ["CD4-positive, alpha-beta T lymphocyte", "CD4-positive, alpha-beta T-cell", "CD4-positive, alpha-beta T-lymphocyte"]}, "CL:0000622": {"name": "acinar cell", "id": "CL:0000622", "clDescription": "A secretory cell that is grouped together with other cells of the same type to form grape shaped clusters known as acini (singular acinus).", "synonyms": ["acinic cell", "acinous cell"]}, "CL:0000791": {"name": "mature alpha-beta T cell", "id": "CL:0000791", "clDescription": "A alpha-beta T cell that has a mature phenotype.", "synonyms": ["mature alpha-beta T lymphocyte", "mature alpha-beta T-cell", "mature alpha-beta T-lymphocyte"]}, "CL:0000625": {"name": "CD8-positive, alpha-beta T cell", "id": "CL:0000625", "clDescription": "A T cell expressing an alpha-beta T cell receptor and the CD8 coreceptor.", "synonyms": ["CD8-positive, alpha-beta T lymphocyte", "CD8-positive, alpha-beta T-cell", "CD8-positive, alpha-beta T-lymphocyte"]}, "CL:0000696": {"name": "PP cell", "id": "CL:0000696", "clDescription": "A cell that stores and secretes pancreatic polypeptide hormone.", "synonyms": ["type F enteroendocrine cell"]}, "CL:0000782": {"name": "myeloid dendritic cell", "id": "CL:0000782", "clDescription": "A dendritic cell of the myeloid lineage.", "synonyms": ["CD11c+CD123- DC", "mDC"]}, "CL:0000784": {"name": "plasmacytoid dendritic cell", "id": "CL:0000784", "clDescription": "A dendritic cell type of distinct morphology, localization, and surface marker expression (CD123-positive) from other dendritic cell types and associated with early stage immune responses, particularly the release of physiologically abundant amounts of type I interferons in response to infection.", "synonyms": ["DC2", "IPC", "T-associated plasma cell", "interferon-producing cell", "lymphoid dendritic cell", "pDC", "plasmacytoid T cell", "plasmacytoid monocyte", "type 2 DC"]}, "CL:0000785": {"name": "mature B cell", "id": "CL:0000785", "clDescription": "A B cell that is mature, having left the bone marrow. Initially, these cells are IgM-positive and IgD-positive, and they can be activated by antigen.", "synonyms": ["mature B lymphocyte", "mature B-cell", "mature B-lymphocyte"]}, "CL:0001201": {"name": "B cell, CD19-positive", "id": "CL:0001201", "clDescription": "A B cell that is CD19-positive.", "synonyms": ["B lymphocyte, CD19-positive", "B-cell, CD19-positive", "B-lymphocyte, CD19-positive", "CD19+ B cell", "CD19-positive B cell"]}, "CL:0000946": {"name": "antibody secreting cell", "id": "CL:0000946", "clDescription": "A lymphocyte of B lineage that is devoted to secreting large amounts of immunoglobulin.", "synonyms": []}, "CL:0000789": {"name": "alpha-beta T cell", "id": "CL:0000789", "clDescription": "A T cell that expresses an alpha-beta T cell receptor complex.", "synonyms": ["alpha-beta T lymphocyte", "alpha-beta T-cell", "alpha-beta T-lymphocyte"]}, "CL:0002419": {"name": "mature T cell", "id": "CL:0002419", "clDescription": "A T cell that expresses a T cell receptor complex and has completed T cell selection.", "synonyms": ["CD3e-positive T cell", "mature T-cell"]}, "CL:0000813": {"name": "memory T cell", "id": "CL:0000813", "clDescription": "A long-lived, antigen-experienced T cell that has acquired a memory phenotype including distinct surface markers and the ability to differentiate into an effector T cell upon antigen reexposure.", "synonyms": ["memory T lymphocyte", "memory T-cell", "memory T-lymphocyte"]}, "CL:0000898": {"name": "naive T cell", "id": "CL:0000898", "clDescription": "Mature T cell not yet exposed to antigen with the phenotype CCR7-positive, CD45RA-positive, and CD127-positive. This cell type is also described as being CD25-negative, CD62L-high and CD44-low.", "synonyms": ["naive T lymphocyte", "naive T-cell", "naive T-lymphocyte"]}, "CL:0001200": {"name": "lymphocyte of B lineage, CD19-positive", "id": "CL:0001200", "clDescription": "A lymphocyte of B lineage that is CD19-positive.", "synonyms": []}, "CL:1001599": {"name": "pancreas exocrine glandular cell", "id": "CL:1001599", "clDescription": "Glandular cell of exocrine pancreas epithelium. Example: pancreatic acinar cell, glandular cells in pancreatic canaliculi, glandular cells in pancreatic ducts.", "synonyms": []}, "CL:1001433": {"name": "epithelial cell of exocrine pancreas", "id": "CL:1001433", "clDescription": "An epithelial cell of the exocrine pancreas.", "synonyms": ["exocrine pancreas cell"]}} \ No newline at end of file +{"CL:0000057": {"name": "fibroblast", "id": "CL:0000057", "clDescription": "A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules. Flattened and irregular in outline with branching processes; appear fusiform or spindle-shaped.", "synonyms": []}, "CL:0000066": {"name": "epithelial cell", "id": "CL:0000066", "clDescription": "A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where apical part is directed towards the lumen and the basal part to the basal lamina.", "synonyms": ["epitheliocyte"]}, "CL:0000084": {"name": "T cell", "id": "CL:0000084", "clDescription": "A type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex.", "synonyms": ["T lymphocyte", "T-cell", "T-lymphocyte"]}, "CL:0000097": {"name": "mast cell", "id": "CL:0000097", "clDescription": "A cell that is found in almost all tissues containing numerous basophilic granules and capable of releasing large amounts of histamine and heparin upon activation. Progenitors leave bone marrow and mature in connective and mucosal tissue. Mature mast cells are found in all tissues, except the bloodstream. Their phenotype is CD117-high, CD123-negative, CD193-positive, CD200R3-positive, and FceRI-high. Stem-cell factor (KIT-ligand; SCF) is the main controlling signal of their survival and development.", "synonyms": ["histaminocyte", "labrocyte", "mastocyte"]}, "CL:0000115": {"name": "endothelial cell", "id": "CL:0000115", "clDescription": "An endothelial cell comprises the outermost layer or lining of anatomical structures and can be squamous or cuboidal. In mammals, endothelial cell has vimentin filaments and is derived from the mesoderm.", "synonyms": ["endotheliocyte"]}, "CL:0000148": {"name": "melanocyte", "id": "CL:0000148", "clDescription": "A pigment cell derived from the neural crest. Contains melanin-filled pigment granules, which gives a brown to black appearance.", "synonyms": []}, "CL:0000169": {"name": "type B pancreatic cell", "id": "CL:0000169", "clDescription": "A cell that secretes insulin and is located towards the center of the islets of Langerhans.", "synonyms": ["B-cell of pancreatic islet", "beta cell of pancreatic islet", "insulin-secreting cell", "pancreatic B cell", "pancreatic B-cell", "pancreatic beta cell", "pancreatic islet core", "type B enteroendocrine cell"]}, "CL:0000171": {"name": "pancreatic A cell", "id": "CL:0000171", "clDescription": "A type of enteocrine cell found in the periphery of the islets of Langerhans that secretes glucagon.", "synonyms": ["alpha cell of islet of Langerhans", "pancreatic alpha cell"]}, "CL:0000173": {"name": "pancreatic D cell", "id": "CL:0000173", "clDescription": "A D cell located in the pancreas. Peripherally placed within the islets like type A cells; contains somatostatin.", "synonyms": ["D-cell of pancreatic islet", "delta cell of islet", "delta cell of pancreatic islet", "pancreatic D-cell", "pancreatic delta cell", "somatostatin-secreting pancreatic cell"]}, "CL:0000187": {"name": "muscle cell", "id": "CL:0000187", "clDescription": "A mature contractile cell, commonly known as a myocyte. This cell has as part of its cytoplasm myofibrils organized in various patterns.", "synonyms": ["muscle fiber", "myocyte"]}, "CL:0000192": {"name": "smooth muscle cell", "id": "CL:0000192", "clDescription": "A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast).", "synonyms": ["SMCs", "myocytes, smooth muscle", "smooth muscle fiber"]}, "CL:0000232": {"name": "erythrocyte", "id": "CL:0000232", "clDescription": "A red blood cell. In mammals, mature erythrocytes are biconcave disks containing hemoglobin whose function is to transport oxygen.", "synonyms": ["RBC", "red blood cell"]}, "CL:0000235": {"name": "macrophage", "id": "CL:0000235", "clDescription": "A mononuclear phagocyte present in variety of tissues, typically differentiated from monocytes, capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells.", "synonyms": ["histiocyte"]}, "CL:0000236": {"name": "B cell", "id": "CL:0000236", "clDescription": "A lymphocyte of B lineage that is capable of B cell mediated immunity.", "synonyms": ["B lymphocyte", "B-cell", "B-lymphocyte"]}, "CL:0000317": {"name": "sebum secreting cell", "id": "CL:0000317", "clDescription": "A cell secreting sebun, an oily substance secreted by sebaceous glands, composed of keratin, fat, and cellular debris.", "synonyms": ["sebocyte"]}, "CL:0000453": {"name": "Langerhans cell", "id": "CL:0000453", "clDescription": "Langerhans cell is a conventional dendritic cell that has plasma membrane part CD207. A Langerhans cell is a stellate dendritic cell of myeloid origin, that appears clear on light microscopy and has a dark-staining, indented nucleus and characteristic inclusions (Birbeck granules) in the cytoplasm; Langerhans cells are found principally in the stratum spinosum of the epidermis, but they also occur in other stratified epithelia and have been identified in the lung, lymph nodes, spleen, and thymus.", "synonyms": ["LC"]}, "CL:0000499": {"name": "stromal cell", "id": "CL:0000499", "clDescription": "A connective tissue cell of an organ found in the loose connective tissue. These are most often associated with the uterine mucosa and the ovary as well as the hematopoietic system and elsewhere.", "synonyms": []}, "CL:0000623": {"name": "natural killer cell", "id": "CL:0000623", "clDescription": "A lymphocyte that can spontaneously kill a variety of target cells without prior antigenic activation via germline encoded activation receptors and also regulate immune responses via cytokine release and direct contact with other cells.", "synonyms": ["NK cell"]}, "CL:0000624": {"name": "CD4-positive, alpha-beta T cell", "id": "CL:0000624", "clDescription": "A mature alpha-beta T cell that expresses an alpha-beta T cell receptor and the CD4 coreceptor.", "synonyms": ["CD4-positive, alpha-beta T lymphocyte", "CD4-positive, alpha-beta T-cell", "CD4-positive, alpha-beta T-lymphocyte"]}, "CL:0000625": {"name": "CD8-positive, alpha-beta T cell", "id": "CL:0000625", "clDescription": "A T cell expressing an alpha-beta T cell receptor and the CD8 coreceptor.", "synonyms": ["CD8-positive, alpha-beta T lymphocyte", "CD8-positive, alpha-beta T-cell", "CD8-positive, alpha-beta T-lymphocyte"]}, "CL:0000738": {"name": "leukocyte", "id": "CL:0000738", "clDescription": "An achromatic cell of the myeloid or lymphoid lineages capable of ameboid movement, found in blood or other tissue.", "synonyms": ["leucocyte", "white blood cell"]}, "CL:0000767": {"name": "basophil", "id": "CL:0000767", "clDescription": "Any of the immature or mature forms of a granular leukocyte that in its mature form has an irregularly shaped, pale-staining nucleus that is partially constricted into two lobes, and with cytoplasm that contains coarse, bluish-black granules of variable size. Basophils contain vasoactive amines such as histamine and serotonin, which are released on appropriate stimulation. A basophil is CD123-positive, CD193-positive, CD203c-positive, and FceRIa-positive.", "synonyms": ["basophilic leucocyte", "basophilic leukocyte"]}, "CL:0000775": {"name": "neutrophil", "id": "CL:0000775", "clDescription": "Any of the immature or mature forms of a granular leukocyte that in its mature form has a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes.", "synonyms": ["neutrocyte", "neutrophil leucocyte", "neutrophil leukocyte", "neutrophilic leucocyte", "neutrophilic leukocyte"]}, "CL:0000782": {"name": "myeloid dendritic cell", "id": "CL:0000782", "clDescription": "A dendritic cell of the myeloid lineage.", "synonyms": ["CD11c+CD123- DC", "mDC"]}, "CL:0000786": {"name": "plasma cell", "id": "CL:0000786", "clDescription": "A terminally differentiated, post-mitotic, antibody secreting cell of the B cell lineage with the phenotype CD138-positive, surface immunonoglobulin-negative, and MHC Class II-negative. Plasma cells are oval or round with extensive rough endoplasmic reticulum, a well-developed Golgi apparatus, and a round nucleus having a characteristic cartwheel heterochromatin pattern and are devoted to producing large amounts of immunoglobulin.", "synonyms": ["plasma B cell", "plasma B-cell", "plasmacyte", "plasmocyte"]}, "CL:0000814": {"name": "mature NK T cell", "id": "CL:0000814", "clDescription": "A mature alpha-beta T cell of a distinct lineage that bears natural killer markers and a T cell receptor specific for a limited set of ligands. NK T cells have activation and regulatory roles particularly early in an immune response.", "synonyms": ["mature NK T lymphocyte", "mature NK T-cell", "mature NK T-lymphocyte", "mature NKT cell", "mature natural killer T cell", "mature natural killer T lymphocyte", "mature natural killer T-cell", "mature natural killer T-lymphocyte"]}, "CL:0000815": {"name": "regulatory T cell", "id": "CL:0000815", "clDescription": "A T cell which regulates overall immune responses as well as the responses of other T cell subsets through direct cell-cell contact and cytokine release.", "synonyms": ["Treg", "regulatory T lymphocyte", "regulatory T-cell", "regulatory T-lymphocyte"]}, "CL:0000896": {"name": "activated CD4-positive, alpha-beta T cell", "id": "CL:0000896", "clDescription": "A recently activated CD4-positive, alpha-beta T cell with the phenotype CD69-positive, CD62L-negative, CD127-negative, and CD25-positive.", "synonyms": ["activated CD4-positive, alpha-beta T lymphocyte", "activated CD4-positive, alpha-beta T-cell", "activated CD4-positive, alpha-beta T-lymphocyte"]}, "CL:0002064": {"name": "pancreatic acinar cell", "id": "CL:0002064", "clDescription": "A secretory cell found in pancreatic acini that secretes digestive enzymes and mucins. This cell is a typical zymogenic cell, have a basal nucleus and basophilic cytoplasm consisting of regular arrays of granular endoplasmic reticulum with mitochondria and dense secretory granules.", "synonyms": ["acinar cell of pancreas"]}, "CL:0002079": {"name": "pancreatic ductal cell", "id": "CL:0002079", "clDescription": "Epithelial cell found in the ducts of the pancreas. This cell type contributes to the high luminal pH.", "synonyms": []}, "CL:0002275": {"name": "pancreatic PP cell", "id": "CL:0002275", "clDescription": "A PP cell located in the islets of the pancreas.", "synonyms": ["PP cell of pancreatic islet", "PP-cell of pancreatic islet", "pancreatic polypeptide-secreting cell"]}, "CL:0002363": {"name": "keratocyte", "id": "CL:0002363", "clDescription": "A keratocyte is a specialized fibroblast\u00a0residing in the cornea stroma that has a flattened, dendritic morphology; located between the lamellae with a large flattened nucleus, and lengthy processes which communicate with neighboring cells. This\u00a0corneal\u00a0layer, representing about 85-90% of corneal thickness, is built up from highly regular collagenous lamellae and extracellular matrix components. Keratocytes play the major role in keeping it transparent, healing its wounds, and synthesizing its components. This cell type secretes collagen I, V, VI, and keratan sulfate.", "synonyms": ["corneal fibroblast", "corneal keratocyte"]}, "CL:0002410": {"name": "pancreatic stellate cell", "id": "CL:0002410", "clDescription": "A cell that is found in the periacinar space of the exocrine pancreas and in perivascular and periductal regions of the pancreas, and has long cytoplasmic processes that encircle the base of the acinus. Expresses several intermediate filament proteins including vimentin and nestin. Shares many of the characteristics of hepatatic stellate cells, but not stellate cells of the central nervous system. Upon activation, this cell type undergoes morphological and gene expression changes that make the cell suggestive of being a type of myofibroblast.", "synonyms": ["PaSC", "pancreas stellate cell"]}, "CL:0000000": {"name": "cell", "id": "CL:0000000", "clDescription": "A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane.", "synonyms": []}, "CL:0000005": {"name": "neural crest derived fibroblast", "id": "CL:0000005", "clDescription": "Any fibroblast that is derived from the neural crest.", "synonyms": ["fibroblast neural crest derived"]}, "CL:0000255": {"name": "eukaryotic cell", "id": "CL:0000255", "synonyms": []}, "CL:0000152": {"name": "exocrine cell", "id": "CL:0000152", "clDescription": "A cell of an exocrine gland; i.e. a gland that discharges its secretion via a duct.", "synonyms": []}, "CL:0000988": {"name": "hematopoietic cell", "id": "CL:0000988", "clDescription": "A cell of a hematopoietic lineage.", "synonyms": ["haematopoietic cell", "haemopoietic cell", "hemopoietic cell"]}, "CL:0000764": {"name": "erythroid lineage cell", "id": "CL:0000764", "clDescription": "A immature or mature cell in the lineage leading to and including erythrocytes.", "synonyms": ["erythropoietic cell"]}, "CL:0000763": {"name": "myeloid cell", "id": "CL:0000763", "clDescription": "A cell of the monocyte, granulocyte, mast cell, megakaryocyte, or erythroid lineage.", "synonyms": []}, "CL:0000145": {"name": "professional antigen presenting cell", "id": "CL:0000145", "clDescription": "A cell capable of processing and presenting lipid and protein antigens to T cells in order to initiate an immune response.", "synonyms": []}, "CL:0002274": {"name": "histamine secreting cell", "id": "CL:0002274", "clDescription": "A cell type that secretes histamine.", "synonyms": []}, "CL:0000151": {"name": "secretory cell", "id": "CL:0000151", "clDescription": "A cell that specializes in controlled release of one or more substances.", "synonyms": []}, "CL:0002320": {"name": "connective tissue cell", "id": "CL:0002320", "clDescription": "A cell of the supporting or framework tissue of the body, arising chiefly from the embryonic mesoderm and including adipose tissue, cartilage, and bone.", "synonyms": []}, "CL:0000068": {"name": "duct epithelial cell", "id": "CL:0000068", "clDescription": "An epithelial cell that is part of a duct.", "synonyms": []}, "CL:0000069": {"name": "branched duct epithelial cell", "id": "CL:0000069", "synonyms": []}, "CL:0002078": {"name": "meso-epithelial cell", "id": "CL:0002078", "clDescription": "Epithelial cell derived from mesoderm or mesenchyme.", "synonyms": ["epithelial mesenchymal cell"]}, "CL:0000215": {"name": "barrier cell", "id": "CL:0000215", "clDescription": "A cell whose primary function is to prevent the transport of stuff across compartments.", "synonyms": []}, "CL:0000213": {"name": "lining cell", "id": "CL:0000213", "clDescription": "A cell within an epithelial cell sheet whose main function is to act as an internal or external covering for a tissue or an organism.", "synonyms": ["boundary cell"]}, "CL:0000081": {"name": "blood cell", "id": "CL:0000081", "clDescription": "A cell found predominately in the blood.", "synonyms": []}, "CL:0000083": {"name": "epithelial cell of pancreas", "id": "CL:0000083", "clDescription": "An epithelial cell of the pancreas.", "synonyms": ["pancreas epithelial cell", "pancreatic epithelial cell"]}, "CL:0000542": {"name": "lymphocyte", "id": "CL:0000542", "clDescription": "A lymphocyte is a leukocyte commonly found in the blood and lymph that has the characteristics of a large nucleus, a neutral staining cytoplasm, and prominent heterochromatin.", "synonyms": []}, "CL:0000945": {"name": "lymphocyte of B lineage", "id": "CL:0000945", "clDescription": "A lymphocyte of B lineage with the commitment to express an immunoglobulin complex.", "synonyms": []}, "CL:0000766": {"name": "myeloid leukocyte", "id": "CL:0000766", "clDescription": "A cell of the monocyte, granulocyte, or mast cell lineage.", "synonyms": []}, "CL:0000518": {"name": "phagocyte (sensu Vertebrata)", "id": "CL:0000518", "clDescription": "A phagocyte in vertebrates that is able to phagocytosis.", "synonyms": []}, "CL:0000094": {"name": "granulocyte", "id": "CL:0000094", "clDescription": "A leukocyte with abundant granules in the cytoplasm.", "synonyms": ["granular leucocyte", "granular leukocyte", "polymorphonuclear leukocyte"]}, "CL:0000234": {"name": "phagocyte", "id": "CL:0000234", "clDescription": "Any cell capable of ingesting particulate matter via phagocytosis.", "synonyms": []}, "CL:0000113": {"name": "mononuclear phagocyte", "id": "CL:0000113", "clDescription": "A vertebrate phagocyte with a single nucleus.", "synonyms": []}, "CL:0000842": {"name": "mononuclear cell", "id": "CL:0000842", "clDescription": "A leukocyte with a single non-segmented nucleus in the mature form.", "synonyms": ["mononuclear leukocyte"]}, "CL:0000325": {"name": "stuff accumulating cell", "id": "CL:0000325", "clDescription": "A cell that is specialised to accumulate a particular substance(s).", "synonyms": []}, "CL:0000147": {"name": "pigment cell", "id": "CL:0000147", "clDescription": "A pigment cell is a cell that contains pigment granules.", "synonyms": ["chromatocyte", "chromatophore"]}, "CL:0000150": {"name": "glandular epithelial cell", "id": "CL:0000150", "clDescription": "A specialized epithelial cell that is capable of synthesizing and secreting certain biomolecules.", "synonyms": []}, "CL:0000154": {"name": "protein secreting cell", "id": "CL:0000154", "synonyms": []}, "CL:0000163": {"name": "endocrine cell", "id": "CL:0000163", "clDescription": "A cell of an endocrine gland, ductless glands that secrete substances which are released directly into the circulation and which influence metabolism and other body functions.", "synonyms": ["endocrinocyte"]}, "CL:0000164": {"name": "enteroendocrine cell", "id": "CL:0000164", "clDescription": "An endocrine cell that is located in the epithelium of the gastrointestinal tract or in the pancreas.", "synonyms": []}, "CL:0000167": {"name": "peptide hormone secreting cell", "id": "CL:0000167", "synonyms": []}, "CL:0000168": {"name": "insulin secreting cell", "id": "CL:0000168", "synonyms": []}, "CL:0008024": {"name": "pancreatic endocrine cell", "id": "CL:0008024", "clDescription": "An endocrine cell that is part of the pancreas.", "synonyms": []}, "CL:0000170": {"name": "glucagon secreting cell", "id": "CL:0000170", "clDescription": "A cell that secretes glucagon.", "synonyms": ["glucagon-secreting cell"]}, "CL:0002067": {"name": "type A enteroendocrine cell", "id": "CL:0002067", "clDescription": "An enteroendocrine cell that produces glucagon.", "synonyms": []}, "CL:0000172": {"name": "somatostatin secreting cell", "id": "CL:0000172", "synonyms": []}, "CL:0000502": {"name": "type D enteroendocrine cell", "id": "CL:0000502", "clDescription": "A cell found throughout the gastrointestinal tract and in the pancreas. They secrete somatostatin in both an endocrine and paracrine manner. Somatostatin inhibits gastrin, cholecystokinin, insulin, glucagon, pancreatic enzymes, and gastric hydrochloric acid. A variety of substances which inhibit gastric acid secretion (vasoactive intestinal peptide, calcitonin gene-related peptide, cholecystokinin, beta-adrenergic agonists, and gastric inhibitory peptide) are thought to act by releasing somatostatin.", "synonyms": ["D cell"]}, "CL:0000183": {"name": "contractile cell", "id": "CL:0000183", "clDescription": "A cell whose primary function is to shorten.", "synonyms": []}, "CL:0000393": {"name": "electrically responsive cell", "id": "CL:0000393", "clDescription": "A cell whose function is determined by its response to an electric signal.", "synonyms": []}, "CL:0008000": {"name": "non-striated muscle cell", "id": "CL:0008000", "clDescription": "Any muscle cell in which the fibers are not organised into sarcomeres.", "synonyms": []}, "CL:0008007": {"name": "visceral muscle cell", "id": "CL:0008007", "clDescription": "A muscle cell that is part of some visceral muscle.", "synonyms": []}, "CL:0000211": {"name": "electrically active cell", "id": "CL:0000211", "clDescription": "A cell whose function is determined by the generation or the reception of an electric signal.", "synonyms": []}, "CL:0000219": {"name": "motile cell", "id": "CL:0000219", "clDescription": "A cell that moves by its own activities.", "synonyms": []}, "CL:0002242": {"name": "nucleate cell", "id": "CL:0002242", "clDescription": "A cell containing at least one nucleus.", "synonyms": []}, "CL:0000226": {"name": "single nucleate cell", "id": "CL:0000226", "clDescription": "A cell with a single nucleus.", "synonyms": []}, "CL:0000329": {"name": "oxygen accumulating cell", "id": "CL:0000329", "synonyms": []}, "CL:0000473": {"name": "defensive cell", "id": "CL:0000473", "clDescription": "A cell whose primary function is to protect the organism.", "synonyms": []}, "CL:2000021": {"name": "sebaceous gland cell", "id": "CL:2000021", "clDescription": "Any native cell that is part of a sebaceous gland.", "synonyms": []}, "CL:0000457": {"name": "biogenic amine secreting cell", "id": "CL:0000457", "synonyms": []}, "CL:0000451": {"name": "dendritic cell", "id": "CL:0000451", "clDescription": "A cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation. These cells are lineage negative (CD3-negative, CD19-negative, CD34-negative, and CD56-negative).", "synonyms": []}, "CL:0000990": {"name": "conventional dendritic cell", "id": "CL:0000990", "clDescription": "Conventional dendritic cell is a dendritic cell that is CD11c-high.", "synonyms": ["DC1", "cDC", "dendritic reticular cell", "type 1 DC"]}, "CL:0000622": {"name": "acinar cell", "id": "CL:0000622", "clDescription": "A secretory cell that is grouped together with other cells of the same type to form grape shaped clusters known as acini (singular acinus).", "synonyms": ["acinic cell", "acinous cell"]}, "CL:0001067": {"name": "group 1 innate lymphoid cell", "id": "CL:0001067", "clDescription": "An innate lymphoid cell that is capable of producing the type 1 cytokine IFN-gamma, but not Th2 or Th17 cell-associated cytokines.", "synonyms": []}, "CL:0000791": {"name": "mature alpha-beta T cell", "id": "CL:0000791", "clDescription": "A alpha-beta T cell that has a mature phenotype.", "synonyms": ["mature alpha-beta T lymphocyte", "mature alpha-beta T-cell", "mature alpha-beta T-lymphocyte"]}, "CL:0000696": {"name": "PP cell", "id": "CL:0000696", "clDescription": "A cell that stores and secretes pancreatic polypeptide hormone.", "synonyms": ["type F enteroendocrine cell"]}, "CL:0000946": {"name": "antibody secreting cell", "id": "CL:0000946", "clDescription": "A lymphocyte of B lineage that is devoted to secreting large amounts of immunoglobulin.", "synonyms": []}, "CL:0000789": {"name": "alpha-beta T cell", "id": "CL:0000789", "clDescription": "A T cell that expresses an alpha-beta T cell receptor complex.", "synonyms": ["alpha-beta T lymphocyte", "alpha-beta T-cell", "alpha-beta T-lymphocyte"]}, "CL:0002419": {"name": "mature T cell", "id": "CL:0002419", "clDescription": "A T cell that expresses a T cell receptor complex and has completed T cell selection.", "synonyms": ["CD3e-positive T cell", "mature T-cell"]}, "CL:0001065": {"name": "innate lymphoid cell", "id": "CL:0001065", "clDescription": "A lymphocyte that lacks characteristic T cell, B cell, myeloid cell, and dendritic cell markers, that functions as part of the innate immune response to produce cytokines and other effector responses.", "synonyms": []}, "CL:1001599": {"name": "pancreas exocrine glandular cell", "id": "CL:1001599", "clDescription": "Glandular cell of exocrine pancreas epithelium. Example: pancreatic acinar cell, glandular cells in pancreatic canaliculi, glandular cells in pancreatic ducts.", "synonyms": []}, "CL:1001433": {"name": "epithelial cell of exocrine pancreas", "id": "CL:1001433", "clDescription": "An epithelial cell of the exocrine pancreas.", "synonyms": ["exocrine pancreas cell"]}} \ No newline at end of file diff --git a/tests/unit/backend/cellguide/pipeline/fixtures/computational_marker_genes.json b/tests/unit/backend/cellguide/pipeline/fixtures/computational_marker_genes.json index 139b96b489ce8..acd18759d82bf 100644 --- a/tests/unit/backend/cellguide/pipeline/fixtures/computational_marker_genes.json +++ b/tests/unit/backend/cellguide/pipeline/fixtures/computational_marker_genes.json @@ -1 +1 @@ -{"CL:0000068": [{"me": 2.58943709631459, "pc": 0.9733727810650887, "marker_score": 4.849226105428682, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000070473", "symbol": "Cldn3", "name": "claudin 3", "groupby_dims": {"organism_ontology_term_label": "Mus musculus"}}, {"me": 3.3762082394894897, "pc": 0.985207100591716, "marker_score": 3.7047647741541714, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000023043", "symbol": "Krt18", "name": "keratin 18", "groupby_dims": {"organism_ontology_term_label": "Mus musculus"}}, {"me": 4.703752843345084, "pc": 0.9704142011834319, "marker_score": 3.633013842494419, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000029304", "symbol": "Spp1", "name": "secreted phosphoprotein 1", "groupby_dims": {"organism_ontology_term_label": "Mus musculus"}}, {"me": 3.1007582934934703, "pc": 0.9911242603550295, "marker_score": 3.10196375245685, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000049382", "symbol": "Krt8", "name": "keratin 8", "groupby_dims": {"organism_ontology_term_label": "Mus musculus"}}, {"me": 2.5029688499893346, "pc": 0.8668639053254438, "marker_score": 2.507367739918827, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000056973", "symbol": "Ces1d", "name": "carboxylesterase 1D", "groupby_dims": {"organism_ontology_term_label": "Mus musculus"}}, {"me": 2.5444790587133292, "pc": 0.8698224852071006, "marker_score": 2.440780889099063, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000003617", "symbol": "Cp", "name": "ceruloplasmin", "groupby_dims": {"organism_ontology_term_label": "Mus musculus"}}, {"me": 2.6737975039724575, "pc": 0.8727810650887574, "marker_score": 2.329663205628343, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000028356", "symbol": "Ambp", "name": "alpha 1 microglobulin/bikunin precursor", "groupby_dims": {"organism_ontology_term_label": "Mus musculus"}}, {"me": 2.3434909119897958, "pc": 0.8698224852071006, "marker_score": 2.2992306496862542, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000026576", "symbol": "Atp1b1", "name": "ATPase, Na+/K+ transporting, beta 1 polypeptide", "groupby_dims": {"organism_ontology_term_label": "Mus musculus"}}, {"me": 3.002996135560015, "pc": 0.9674556213017751, "marker_score": 2.1520194272424154, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000029810", "symbol": "Tmem176b", "name": "transmembrane protein 176B", "groupby_dims": {"organism_ontology_term_label": "Mus musculus"}}, {"me": 2.0398063368469703, "pc": 0.7751479289940828, "marker_score": 1.9874133637806937, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000035910", "symbol": "Dcdc2a", "name": "doublecortin domain containing 2a", "groupby_dims": {"organism_ontology_term_label": "Mus musculus"}}, {"me": 2.423928036051951, "pc": 0.9289940828402367, "marker_score": 1.8421908172630719, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000045394", "symbol": "Epcam", "name": "epithelial cell adhesion molecule", "groupby_dims": {"organism_ontology_term_label": "Mus musculus"}}, {"me": 2.0955027595895235, "pc": 0.7218934911242604, "marker_score": 1.6884914150468604, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000057092", "symbol": "Fxyd3", "name": "FXYD domain-containing ion transport regulator 3", "groupby_dims": {"organism_ontology_term_label": "Mus musculus"}}, {"me": 2.0014840299067114, "pc": 0.7011834319526628, "marker_score": 1.5058298077158137, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000018569", "symbol": "Cldn7", "name": "claudin 7", "groupby_dims": {"organism_ontology_term_label": "Mus musculus"}}, {"me": 4.595236187332247, "pc": 0.9644970414201184, "marker_score": 1.4609650888347965, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000002985", "symbol": "Apoe", "name": "apolipoprotein E", "groupby_dims": {"organism_ontology_term_label": "Mus musculus"}}, {"me": 2.146256829187068, "pc": 0.6420118343195266, "marker_score": 1.4260020029031646, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000026417", "symbol": "Pigr", "name": "polymeric immunoglobulin receptor", "groupby_dims": {"organism_ontology_term_label": "Mus musculus"}}, {"me": 2.0235770485617897, "pc": 0.650887573964497, "marker_score": 1.417450937105599, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000020911", "symbol": "Krt19", "name": "keratin 19", "groupby_dims": {"organism_ontology_term_label": "Mus musculus"}}, {"me": 2.019349081474438, "pc": 0.6745562130177515, "marker_score": 1.4013878913517683, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000024986", "symbol": "Hhex", "name": "hematopoietically expressed homeobox", "groupby_dims": {"organism_ontology_term_label": "Mus musculus"}}, {"me": 2.7915691245010708, "pc": 0.9497041420118343, "marker_score": 1.3537897648755646, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000027712", "symbol": "Anxa5", "name": "annexin A5", "groupby_dims": {"organism_ontology_term_label": "Mus musculus"}}, {"me": 1.981355778438108, "pc": 0.7603550295857988, "marker_score": 1.3355390670917031, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000040681", "symbol": "Hmgn1", "name": "high mobility group nucleosomal binding domain 1", "groupby_dims": {"organism_ontology_term_label": "Mus musculus"}}, {"me": 2.540682369146865, "pc": 0.9260355029585798, "marker_score": 1.3334398993289216, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000027907", "symbol": "S100a11", "name": "S100 calcium binding protein A11", "groupby_dims": {"organism_ontology_term_label": "Mus musculus"}}, {"me": 2.338416402250427, "pc": 0.8668639053254438, "marker_score": 1.3198974958018943, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000023367", "symbol": "Tmem176a", "name": "transmembrane protein 176A", "groupby_dims": {"organism_ontology_term_label": "Mus musculus"}}, {"me": 1.8681165046498256, "pc": 0.5828402366863905, "marker_score": 1.3019136325274676, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000025934", "symbol": "Gsta3", "name": "glutathione S-transferase, alpha 3", "groupby_dims": {"organism_ontology_term_label": "Mus musculus"}}, {"me": 2.298837989267677, "pc": 0.5857988165680473, "marker_score": 1.211588725353385, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000026822", "symbol": "Lcn2", "name": "lipocalin 2", "groupby_dims": {"organism_ontology_term_label": "Mus musculus"}}, {"me": 1.8788787016997466, "pc": 0.5473372781065089, "marker_score": 1.1950039956527871, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000068874", "symbol": "Selenbp1", "name": "selenium binding protein 1", "groupby_dims": {"organism_ontology_term_label": "Mus musculus"}}, {"me": 1.882121785481771, "pc": 0.5325443786982249, "marker_score": 1.1861521748974586, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000000567", "symbol": "Sox9", "name": "SRY (sex determining region Y)-box 9", "groupby_dims": {"organism_ontology_term_label": "Mus musculus"}}, {"me": 1.8473869486058012, "pc": 0.5562130177514792, "marker_score": 1.1790360245371763, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000001663", "symbol": "Gstt1", "name": "glutathione S-transferase, theta 1", "groupby_dims": {"organism_ontology_term_label": "Mus musculus"}}, {"me": 1.8791268697599086, "pc": 0.606508875739645, "marker_score": 1.1783735332105294, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000029994", "symbol": "Anxa4", "name": "annexin A4", "groupby_dims": {"organism_ontology_term_label": "Mus musculus"}}, {"me": 1.976127292798913, "pc": 0.5443786982248521, "marker_score": 1.164272935348535, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000028716", "symbol": "Pdzk1ip1", "name": "PDZK1 interacting protein 1", "groupby_dims": {"organism_ontology_term_label": "Mus musculus"}}, {"me": 2.436034990393597, "pc": 0.5443786982248521, "marker_score": 1.1472743648360488, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000040564", "symbol": "Apoc1", "name": "apolipoprotein C-I", "groupby_dims": {"organism_ontology_term_label": "Mus musculus"}}, {"me": 1.8768754925644189, "pc": 0.5059171597633136, "marker_score": 1.1239965496941564, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000018211", "symbol": "Wfdc15b", "name": "WAP four-disulfide core domain 15B", "groupby_dims": {"organism_ontology_term_label": "Mus musculus"}}, {"me": 2.3905444445910753, "pc": 0.6568047337278107, "marker_score": 1.1023212786544772, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000070348", "symbol": "Ccnd1", "name": "cyclin D1", "groupby_dims": {"organism_ontology_term_label": "Mus musculus"}}, {"me": 1.881857577237216, "pc": 0.4881656804733728, "marker_score": 1.0701112924659721, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000022132", "symbol": "Cldn10", "name": "claudin 10", "groupby_dims": {"organism_ontology_term_label": "Mus musculus"}}, {"me": 1.820375078179863, "pc": 0.5266272189349113, "marker_score": 1.047593412604084, "specificity": 1.0, "gene_ontology_term_id": "ENSMUSG00000031788", "symbol": "Kifc3", "name": "kinesin family member C3", "groupby_dims": 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a/tests/unit/backend/cellguide/pipeline/fixtures/ontology_tree/NCBITaxon_9606/ontology_graph.json b/tests/unit/backend/cellguide/pipeline/fixtures/ontology_tree/NCBITaxon_9606/ontology_graph.json index 9cabe94b739dc..13f5806f218d1 100644 --- a/tests/unit/backend/cellguide/pipeline/fixtures/ontology_tree/NCBITaxon_9606/ontology_graph.json +++ b/tests/unit/backend/cellguide/pipeline/fixtures/ontology_tree/NCBITaxon_9606/ontology_graph.json @@ -1 +1 @@ -{"id": "CL:0000000__0", "name": "cell", "n_cells_rollup": 9424, "n_cells": 0, "children": [{"id": "CL:0000255__0", "name": "eukaryotic cell", "n_cells_rollup": 4542, "n_cells": 0, "children": [{"id": "CL:0000023__0", "name": "oocyte", "n_cells_rollup": 0, "n_cells": 0, "children": [{"id": "CL:0000654__0", "name": "primary oocyte", "n_cells_rollup": 0, "n_cells": 0}, {"id": "CL:0000655__0", "name": "secondary oocyte", "n_cells_rollup": 0, "n_cells": 0}]}, {"id": "CL:0000722__0", "name": "cystoblast", "n_cells_rollup": 0, "n_cells": 0}, 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"n_cells_rollup": 0, "n_cells": 0}]}]} \ No newline at end of file diff --git a/tests/unit/backend/cellguide/pipeline/fixtures/reformatted_computational_marker_genes.json b/tests/unit/backend/cellguide/pipeline/fixtures/reformatted_computational_marker_genes.json index 49171c490feec..33ce7c295ed70 100644 --- a/tests/unit/backend/cellguide/pipeline/fixtures/reformatted_computational_marker_genes.json +++ b/tests/unit/backend/cellguide/pipeline/fixtures/reformatted_computational_marker_genes.json @@ -1 +1 @@ -{"Cldn3": {"Mus musculus": {"All Tissues": [{"marker_score": 4.849226105428682, "me": 2.58943709631459, "pc": 0.9733727810650887, "cell_type_id": "CL:0000068"}, {"marker_score": 4.849226105428682, "me": 2.58943709631459, "pc": 0.9733727810650887, "cell_type_id": "CL:0000069"}, {"marker_score": 4.849226105428682, "me": 2.58943709631459, "pc": 0.9733727810650887, "cell_type_id": "CL:0002079"}], "pancreas": [{"marker_score": 4.849226105428682, "me": 2.58943709631459, "pc": 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(2022) Science", "tissue": [{"label": "mucosa", "ontology_term_id": "UBERON:0000344"}, {"label": "skin of body", "ontology_term_id": "UBERON:0002097"}], "disease": [{"label": "normal", "ontology_term_id": "PATO:0000461"}], "organism": [{"label": "Homo sapiens", "ontology_term_id": "NCBITaxon:9606"}]}], "CL:1001599": [{"collection_name": "Tabula Muris Senis", "collection_url": "https://cellxgene.cziscience.com/collections/0b9d8a04-bb9d-44da-aa27-705bb65b54eb", "publication_url": "10.1038/s41586-020-2496-1", "publication_title": "The Tabula Muris Consortium et al. (2020) Nature", "tissue": [{"label": "pancreas", "ontology_term_id": "UBERON:0001264"}], "disease": [{"label": "normal", "ontology_term_id": "PATO:0000461"}], "organism": [{"label": "Mus musculus", "ontology_term_id": "NCBITaxon:10090"}]}], "CL:1001433": [{"collection_name": "Tabula Muris Senis", "collection_url": "https://cellxgene.cziscience.com/collections/0b9d8a04-bb9d-44da-aa27-705bb65b54eb", "publication_url": "10.1038/s41586-020-2496-1", "publication_title": "The Tabula Muris Consortium et al. (2020) Nature", "tissue": [{"label": "pancreas", "ontology_term_id": "UBERON:0001264"}], "disease": [{"label": "normal", "ontology_term_id": "PATO:0000461"}], "organism": [{"label": "Mus musculus", "ontology_term_id": "NCBITaxon:10090"}]}]} \ No newline at end of file diff --git a/tests/unit/backend/cellguide/pipeline/fixtures/tissue_metadata.json b/tests/unit/backend/cellguide/pipeline/fixtures/tissue_metadata.json index ccaa0839125c5..2971dae49a056 100644 --- a/tests/unit/backend/cellguide/pipeline/fixtures/tissue_metadata.json +++ b/tests/unit/backend/cellguide/pipeline/fixtures/tissue_metadata.json @@ -1 +1 @@ -{"UBERON:0001264": {"name": "pancreas", "id": "UBERON:0001264", "uberonDescription": "An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating hormones[GO].", "synonyms": []}, "UBERON:0002097": {"name": "skin of body", "id": "UBERON:0002097", "uberonDescription": "The organ covering the body that consists of the dermis and epidermis.", "synonyms": ["entire skin", "skin organ"]}} \ No newline at end of file +{"UBERON:0000344": {"name": "mucosa", "id": "UBERON:0000344", "uberonDescription": "A lining of mostly endodermal origin, covered in epithelium, which is involved in absorption and secretion. They line various body cavities that are exposed to the external environment and internal organs. It is at several places continuous with skin: at the nostrils, the lips, the ears, the genital area, and the anus. The sticky, thick fluid secreted by the mucous membranes and gland is termed mucus. The term mucous membrane refers to where they are found in the body and not every mucous membrane secretes mucus[WP].", "synonyms": ["mucosa of organ", "mucosa of organ part", "mucosal region", "mucous membrane", "organ mucosa"]}, "UBERON:0001264": {"name": "pancreas", "id": "UBERON:0001264", "uberonDescription": "An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating hormones[GO].", "synonyms": []}, "UBERON:0002097": {"name": "skin of body", "id": "UBERON:0002097", "uberonDescription": "The organ covering the body that consists of the dermis and epidermis.", "synonyms": ["entire skin", "skin organ"]}} \ No newline at end of file diff --git a/tests/unit/backend/cellguide/pipeline/fixtures/valid_explorer_cxgs.json b/tests/unit/backend/cellguide/pipeline/fixtures/valid_explorer_cxgs.json index 12f019abef752..6efccc02fd2e0 100644 --- a/tests/unit/backend/cellguide/pipeline/fixtures/valid_explorer_cxgs.json +++ b/tests/unit/backend/cellguide/pipeline/fixtures/valid_explorer_cxgs.json @@ -1 +1 @@ -{"organism_celltype_cxgs": {"homo_sapiens": ["CL:0", "CL:1", "CL:2", "CL:3", "CL:4", "CL:5", "CL:6", "CL:7", "CL:8", "CL:9", "CL:10", "CL:11", "CL:12", "CL:13", "CL:14", "CL:15", "CL:16", "CL:17", "CL:18", "CL:19", "CL:20", "CL:21", "CL:22", "CL:23", "CL:24", "CL:25", "CL:26", "CL:27", "CL:28", "CL:29", "CL:30", "CL:31", "CL:32", "CL:33", "CL:34", "CL:35", "CL:36", "CL:37", "CL:38", "CL:39", "CL:40", "CL:41", "CL:42", "CL:43", "CL:44", "CL:45", "CL:46", "CL:47", "CL:48", "CL:49", "CL:50", "CL:51", "CL:52", "CL:53", "CL:54", "CL:55", "CL:56", "CL:57", "CL:58", "CL:59", "CL:60", "CL:61", "CL:62", "CL:63", "CL:64", "CL:65", "CL:66", "CL:67", "CL:68", "CL:69", "CL:70", "CL:71", "CL:72", "CL:73", "CL:74", "CL:75", "CL:76", "CL:77", "CL:78", "CL:79", "CL:80", "CL:81", "CL:82", "CL:83", "CL:84", "CL:85", "CL:86", "CL:87", "CL:88", "CL:89", "CL:90", "CL:91", "CL:92", "CL:93", "CL:94", "CL:95", "CL:96", "CL:97", "CL:98", "CL:99"], "mus_musculus": ["CL:0", "CL:1", "CL:2", "CL:3", "CL:4", "CL:5", "CL:6", "CL:7", "CL:8", "CL:9", "CL:10", "CL:11", "CL:12", "CL:13", "CL:14", "CL:15", "CL:16", "CL:17", "CL:18", "CL:19", "CL:20", "CL:21", "CL:22", "CL:23", "CL:24", "CL:25", "CL:26", "CL:27", "CL:28", "CL:29", "CL:30", "CL:31", "CL:32", "CL:33", "CL:34", "CL:35", "CL:36", "CL:37", "CL:38", "CL:39", "CL:40", "CL:41", "CL:42", "CL:43", "CL:44", "CL:45", "CL:46", "CL:47", "CL:48", "CL:49", "CL:50", "CL:51", "CL:52", "CL:53", "CL:54", "CL:55", "CL:56", "CL:57", "CL:58", "CL:59", "CL:60", "CL:61", "CL:62", "CL:63", "CL:64", "CL:65", "CL:66", "CL:67", "CL:68", "CL:69", "CL:70", "CL:71", "CL:72", "CL:73", "CL:74", "CL:75", "CL:76", "CL:77", "CL:78", "CL:79", "CL:80", "CL:81", "CL:82", "CL:83", "CL:84", "CL:85", "CL:86", "CL:87", "CL:88", "CL:89", "CL:90", "CL:91", "CL:92", "CL:93", "CL:94", "CL:95", "CL:96", "CL:97", "CL:98", "CL:99"]}, "organism_tissue_celltype_cxgs": {"homo_sapiens": {"UBERON:0": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:1": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:2": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:3": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:4": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:5": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:6": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:7": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:8": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:9": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:10": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:11": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:12": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:13": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:14": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:15": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:16": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:17": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:18": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:19": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"]}, "mus_musculus": {"UBERON:0": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:1": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:2": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:3": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:4": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:5": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:6": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:7": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:8": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:9": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:10": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:11": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:12": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:13": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:14": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:15": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:16": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:17": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:18": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"], "UBERON:19": ["CL:6", "CL:17", "CL:4", "CL:3", "CL:14", "CL:5", "CL:13", "CL:19", "CL:16", "CL:7", "CL:18", "CL:0", "CL:1", "CL:15", "CL:11", "CL:2", "CL:8", "CL:10", "CL:9", "CL:12"]}}} \ No newline at end of file +{"organism_celltype_cxgs": {"homo_sapiens": ["CL:0", "CL:1", "CL:2", "CL:3", "CL:4", "CL:5", "CL:6", "CL:7", "CL:8", "CL:9", "CL:10", "CL:11", "CL:12", "CL:13", "CL:14", "CL:15", "CL:16", "CL:17", "CL:18", "CL:19", "CL:20", "CL:21", "CL:22", "CL:23", "CL:24", "CL:25", "CL:26", "CL:27", "CL:28", "CL:29", "CL:30", "CL:31", "CL:32", "CL:33", "CL:34", "CL:35", "CL:36", "CL:37", "CL:38", "CL:39", "CL:40", "CL:41", "CL:42", "CL:43", "CL:44", "CL:45", "CL:46", "CL:47", "CL:48", "CL:49", "CL:50", "CL:51", "CL:52", "CL:53", "CL:54", "CL:55", "CL:56", "CL:57", "CL:58", "CL:59", 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"CL:70", "CL:71", "CL:72", "CL:73", "CL:74", "CL:75", "CL:76", "CL:77", "CL:78", "CL:79", "CL:80", "CL:81", "CL:82", "CL:83", "CL:84", "CL:85", "CL:86", "CL:87", "CL:88", "CL:89", "CL:90", "CL:91", "CL:92", "CL:93", "CL:94", "CL:95", "CL:96", "CL:97", "CL:98", "CL:99"]}, "organism_tissue_celltype_cxgs": {"homo_sapiens": {"UBERON:0": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:1": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:2": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:3": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:4": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:5": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:6": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:7": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:8": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:9": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:10": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:11": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:12": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:13": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:14": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:15": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:16": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:17": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:18": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:19": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"]}, "mus_musculus": {"UBERON:0": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:1": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:2": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:3": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:4": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:5": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:6": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:7": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:8": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:9": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:10": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:11": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:12": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:13": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:14": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:15": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:16": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:17": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:18": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"], "UBERON:19": ["CL:16", "CL:15", "CL:13", "CL:10", "CL:2", "CL:9", "CL:1", "CL:19", "CL:11", "CL:18", "CL:3", "CL:7", "CL:5", "CL:6", "CL:4", "CL:17", "CL:12", "CL:0", "CL:14", "CL:8"]}}} \ No newline at end of file diff --git a/tests/unit/backend/de/api/test_v1.py b/tests/unit/backend/de/api/test_v1.py index 36dff1a9032be..4bf9ca34a8744 100644 --- a/tests/unit/backend/de/api/test_v1.py +++ b/tests/unit/backend/de/api/test_v1.py @@ -26,19 +26,19 @@ def setUpClass(cls) -> None: @patch("backend.de.api.v1.load_snapshot") def test__differentialExpression_returns_expected_results(self, load_snapshot): expected_effect_size_sums = [ - [-263, 693, 182, 2654, 696, 2763, 2021], - [-263, 693, 182, 2654, 696, 2763, 0], - [-263, 693, 182, 2654, 696, 2763, 2836], + [-299, 138, -269, 2654, 696, 2763, 2021], + [-299, 138, -269, 2654, 696, 2763, 0], + [-299, 138, -269, 2654, 696, 2763, 2836], ] expected_log_fold_change_sums = [ - [-25, 137, 119, 491, 199, 532, 483], - [-25, 137, 119, 491, 199, 532, 0], - [-25, 137, 119, 491, 199, 532, 500], + [-73, 13, -52, 491, 199, 532, 483], + [-73, 13, -52, 491, 199, 532, 0], + [-73, 13, -52, 491, 199, 532, 500], ] expected_log_p_value_sums = [ - [340278, 141505, 194412, 125959, 134096, 69440, 123317], - [340278, 141505, 194412, 125959, 134096, 69440, 0], - [340278, 141505, 194412, 125959, 134096, 69440, 123599], + [596114, 157548, 276574, 125959, 134096, 69440, 123317], + [596114, 157548, 276574, 125959, 134096, 69440, 0], + [596114, 157548, 276574, 125959, 134096, 69440, 123599], ] expected_n_overlap = [ [0, 0, 0, 0, 0, 0, 37], diff --git a/tests/unit/backend/wmg/fixtures/realistic-test-snapshot/cell_counts.csv.gz b/tests/unit/backend/wmg/fixtures/realistic-test-snapshot/cell_counts.csv.gz index e400b3590e803..4f51e64936dba 100644 Binary files a/tests/unit/backend/wmg/fixtures/realistic-test-snapshot/cell_counts.csv.gz and b/tests/unit/backend/wmg/fixtures/realistic-test-snapshot/cell_counts.csv.gz differ diff --git a/tests/unit/backend/wmg/fixtures/realistic-test-snapshot/cell_counts_diffexp.csv.gz b/tests/unit/backend/wmg/fixtures/realistic-test-snapshot/cell_counts_diffexp.csv.gz index a1f62911e5ee2..49ebd9aa3b5bf 100644 Binary files a/tests/unit/backend/wmg/fixtures/realistic-test-snapshot/cell_counts_diffexp.csv.gz and b/tests/unit/backend/wmg/fixtures/realistic-test-snapshot/cell_counts_diffexp.csv.gz differ diff --git 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