Is your feature request related to a problem? Please describe.
Converting from HGVS to VCF is always a challenge
- Semi - regularly updated transcript versions result in difficulties during conversion e.g. NM_00003.2 vs NM_00003.3
- For variants failing conversion, hgvs to vcf script currently halts
Describe the solution you'd like
Enhance hgvs to vcf feature such that
- Optionally transcript version (in input) can be ignored. The output VCF INFO field can specify which version was used during conversion
- Provide a flag to continue processing irrespective of error. The output VCF should contain the error (whether it's an invalid hgvs entry, one that cannot be processed due to whatever reason)
Is your feature request related to a problem? Please describe.
Converting from HGVS to VCF is always a challenge
Describe the solution you'd like
Enhance hgvs to vcf feature such that