No picture left when stride_size == patch_size

[dan1elR]

In the script make_output_unet no picture is left after cropping away the padding if stride_size == patch_size.
Additionally, as padding with this setting was only applied at the outside, the inner pictures get cropped though nothing was padded here.

PytorchDigitalPathology/segmentation_epistroma_unet/make_output_unet_cmd.py

Line 142 in 48e10d6

output=output[:,:,stride_size//2:-stride_size//2,stride_size//2:-stride_size//2,:]

[dan1elR]

Does it seam right, to change the order and at first concatenate the tiles and afterwards removing half stride (dimensions need adjustment)?

[choosehappy]

These parameters were very carefully chosen for the size of the network, input, stride, and output sizes. it is not intended as a general solution, but instead a jumping-off point for others to modify

…

On Mon, Mar 8, 2021 at 5:44 PM Murmeltier105 ***@***.***> wrote: Does it seam right, to change the order and at first concatenate the tiles and afterwards removing half stride (dimensions need adjustment)? — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#15 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ACJ3XTGJMVY6CHRNKHZMSIDTCT5IJANCNFSM4YZVLUWA> .