feat: Upgrade DIDComm flows with new credo-ts agent version upgrade

[ankita-p17]

✅ Preliminary Checks

• I've read the contibution guide and agree to it
• I have searched existing issues and pull requests to avoid duplicates.
• I'm willing to create a PR for this feature. (if applicable).

🧩 Problem Statement

Upgrade DIDComm flows with agent version upgrade to 0.6.1

💡 Proposed Solution

Test and update implementation as needed

🔄 Alternatives Considered

No response

📎 Additional Context

No response

✅ Acceptance Criteria

No response

[GHkrishna]

Related PR (Agent-controllers):

• Fixed did, schema and cred-def controller: fix: did, schema and cred-def controller agent-controller#350
• Did controller: fix: did and polygon controller agent-controller#347
• Polygon controller: fix: did and polygon controller agent-controller#347
• Credo version to latest: feat: update credo to latest agent-controller#345

To do:

• Issuance
• Verification
• Endorse transaction
• Basic message
• Fix issue with invalid oob connection domain being created