Merge pull request #88 from csdms/mcflugen/update-python

Update python version to 3.10+

Author: mcflugen

.github/workflows/docs.yml

@@ -38,7 +38,7 @@ jobs:
           - uses: conda-incubator/setup-miniconda@v2
             with:
               auto-update-conda: true
-              python-version: 3.9
+              python-version: 3.12
               channels: conda-forge
               channel-priority: true
 

.github/workflows/lint.yml

@@ -16,10 +16,10 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v2
-      - name: Set up Python 3.9
+      - name: Set up Python 3.12
         uses: actions/setup-python@v2
         with:
-          python-version: 3.9
+          python-version: 3.12
 
       - name: Lint
         run: |

.github/workflows/test-cli.yml

@@ -0,0 +1,43 @@
+name: Test CLI
+
+on: [push, pull_request]
+
+jobs:
+  test-cli:
+    # We want to run on external PRs, but not on our own internal PRs as they'll be run
+    # by the push to the branch. Without this if check, checks are duplicated since
+    # internal PRs match both the push and pull_request events.
+    if:
+      github.event_name == 'push' || github.event.pull_request.head.repo.full_name !=
+      github.repository
+
+    runs-on: ${{ matrix.os }}
+
+    defaults:
+      run:
+        shell: bash -l {0}
+
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, macos-latest]
+        python-version: ["3.10", "3.11", "3.12"]
+
+    steps:
+      - uses: actions/checkout@v3
+        with:
+          submodules: true
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v4
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Install dependencies
+        run: python -m pip install nox tomli
+
+      - name: Run the tests
+        run: nox --session test test-cli --python ${{ matrix.python-version }} --verbose
+
+      - name: Coveralls
+        if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.9'
+        uses: AndreMiras/coveralls-python-action@v20201129

.github/workflows/build-test-ci.yml .github/workflows/test-langs.yml

@@ -1,9 +1,9 @@
-name: Build/Test CI
+name: Test languages
 
 on: [push, pull_request]
 
 jobs:
-  build-and-test:
+  test-langs:
     # We want to run on external PRs, but not on our own internal PRs as they'll be run
     # by the push to the branch. Without this if check, checks are duplicated since
     # internal PRs match both the push and pull_request events.
@@ -18,18 +18,16 @@ jobs:
         shell: bash -l {0}
 
     strategy:
+      fail-fast: false
       matrix:
         os: [ubuntu-latest, macos-latest]
-        python-version: ["3.9", "3.10"]
+        python-version: ["3.10", "3.11", "3.12"]
+        language: ["c", "cxx", "python", "fortran"]
 
     steps:
       - uses: actions/checkout@v3
         with:
           submodules: true
-      - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v4
-        with:
-          python-version: ${{ matrix.python-version }}
 
       - uses: conda-incubator/setup-miniconda@v2
         with:
@@ -43,13 +41,10 @@ jobs:
         run: python -m pip install nox tomli
 
       - name: Install compilers
-        run: mamba install c-compiler cxx-compiler fortran-compiler cmake
-
-      - name: Run the tests
-        run: nox --session test test-cli --python ${{ matrix.python-version }} --verbose
+        run: mamba install c-compiler cxx-compiler fortran-compiler
 
       - name: Run the language tests
-        run: nox --non-interactive --error-on-missing-interpreter --session test-langs --python ${{ matrix.python-version }} --verbose
+        run: nox -s "test-langs-${{ matrix.python-version }}(lang='${{ matrix.language }}')" --python ${{ matrix.python-version }} --verbose
 
       - name: Coveralls
         if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.9'

.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 repos:
 - repo: https://github.com/psf/black
-  rev: 22.3.0
+  rev: 24.2.0
   hooks:
   - id: black
     name: black
@@ -25,7 +25,7 @@ repos:
     exclude: ^babelizer/data
 
 - repo: https://github.com/pycqa/flake8
-  rev: 4.0.1
+  rev: 7.0.0
   hooks:
   - id: flake8
     additional_dependencies:
@@ -35,21 +35,21 @@ repos:
     exclude: ^babelizer/data
 
 - repo: https://github.com/asottile/pyupgrade
-  rev: v2.34.0
+  rev: v3.15.1
   hooks:
   - id: pyupgrade
-    args: [--py38-plus]
+    args: [--py310-plus]
     exclude: ^babelizer/data
 
 - repo: https://github.com/PyCQA/isort
-  rev: 5.10.1
+  rev: 5.13.2
   hooks:
   - id: isort
     files: \.py$
     exclude: ^babelizer/data
 
 - repo: https://github.com/pre-commit/pre-commit-hooks
-  rev: v4.3.0
+  rev: v4.5.0
   hooks:
     - id: check-builtin-literals
       exclude: ^babelizer/data
@@ -66,7 +66,7 @@ repos:
     - id: trailing-whitespace
 
 - repo: https://github.com/PyCQA/pydocstyle
-  rev: 6.1.1
+  rev: 6.3.0
   hooks:
   - id: pydocstyle
     files: babelizer/.*\.py$
@@ -77,7 +77,7 @@ repos:
     additional_dependencies: [".[toml]"]
 
 - repo: https://github.com/pre-commit/mirrors-mypy
-  rev: v0.982
+  rev: v1.8.0
   hooks:
   - id: mypy
     additional_dependencies: [types-all]

babelizer/__init__.py

@@ -1,4 +1,5 @@
 """The *babelizer*."""
+
 from ._version import __version__
 
 __all__ = ["__version__"]

babelizer/cli.py

@@ -1,13 +1,20 @@
 """The command line interface to the babelizer."""
+
 import fnmatch
 import os
 import pathlib
+import sys
 import tempfile
 from functools import partial
 
 import click
 import git
-import pkg_resources
+
+if sys.version_info >= (3, 12):  # pragma: no cover (PY12+)
+    import importlib.resources as importlib_resources
+else:  # pragma: no cover (<PY312)
+    import importlib_resources
+
 
 from .errors import OutputDirExistsError, ScanError, SetupPyError, ValidationError
 from .metadata import BabelMetadata
@@ -70,7 +77,7 @@ def init(meta, template, quiet, verbose, package_version):
     META is babelizer configuration information, usually saved to a file.
     """
     output = pathlib.Path(".")
-    template = template or pkg_resources.resource_filename("babelizer", "data")
+    template = template or str(importlib_resources.files("babelizer") / "data")
 
     if not quiet:
         out(f"reading template from {template}")
@@ -138,7 +145,7 @@ def update(template, quiet, verbose):
         err("this does not appear to be a babelized folder (missing 'babel.yaml')")
         raise click.Abort()
 
-    template = template or pkg_resources.resource_filename("babelizer", "data")
+    template = template or str(importlib_resources.files("babelizer") / "data")
 
     if not quiet:
         out(f"reading template from {template}")
@@ -359,9 +366,7 @@ def ask_until_done(text):
     }
 
     libraries = {}
-    if (not prompt) or any(
-        [x is not None for x in (name, library, header, entry_point)]
-    ):
+    if (not prompt) or any(x is not None for x in (name, library, header, entry_point)):
         babelized_class = name or ask("Name of babelized class", default="<name>")
         libraries[babelized_class] = {
             "language": language,
@@ -385,11 +390,13 @@ def ask_until_done(text):
             libraries[babelized_class] = {
                 "language": language,
                 "library": ask(f"[{babelized_class}] Name of library to babelize"),
-                "header": ask(
-                    f"[{babelized_class}] Name of header file containing BMI class "
-                )
-                if language != "python"
-                else "__UNUSED__",
+                "header": (
+                    ask(
+                        f"[{babelized_class}] Name of header file containing BMI class "
+                    )
+                    if language != "python"
+                    else "__UNUSED__"
+                ),
                 "entry_point": ask(f"[{babelized_class}] Name of BMI class "),
             }
             if not yes("Add another library?", default=False):

babelizer/data/{{cookiecutter.package_name}}/pyproject.toml

@@ -1,5 +1,5 @@
 [build-system]
-requires = ["cython", "numpy", "setuptools<60", "wheel"]
+requires = ["cython", "numpy", "setuptools", "wheel"]
 
 [tool.pytest.ini_options]
 minversion = "5.0"

babelizer/data/{{cookiecutter.package_name}}/{{cookiecutter.package_name}}/__init__.py

@@ -1,8 +1,7 @@
 #! /usr/bin/env python
-import pkg_resources
+import importlib.metadata
 
-
-__version__ = pkg_resources.get_distribution("{{ cookiecutter.package_name }}").version
+__version__ = importlib.metadata.version("{{ cookiecutter.package_name }}")
 
 
 from .bmi import (

babelizer/data/{{cookiecutter.package_name}}/{{cookiecutter.package_name}}/bmi.py

@@ -10,7 +10,12 @@
 from .lib import {{ classes|join(', ') }}
 
 {%- else %}
-import pkg_resources
+import sys
+if sys.version_info >= (3, 12):  # pragma: no cover (PY12+)
+    import importlib.resources as importlib_resources
+else:  # pragma: no cover (<PY312)
+    import importlib_resources
+
 
 {% for babelized_class, component in cookiecutter.components|dictsort %}
 
@@ -20,7 +25,7 @@
 
     {%- for cls in classes %}
 {{ cls }}.__name__ = "{{ cls }}"
-{{ cls }}.METADATA = pkg_resources.resource_filename(__name__ , "data/{{ cls }}")
+{{ cls }}.METADATA = str(importlib_resources.files(__name__) / "data/{{ cls }}")
     {%- endfor %}
 
 {%- endif %}

babelizer/metadata.py

@@ -1,4 +1,5 @@
 """Library metadata used by the babelizer to wrap libraries."""
+
 import pathlib
 import re
 import warnings
@@ -142,7 +143,9 @@ def __init__(
             Information about how to set up continuous integration.
         """
         if plugin is not None:
-            warnings.warn("use 'package' instead of 'plugin'", DeprecationWarning)
+            warnings.warn(
+                "use 'package' instead of 'plugin'", DeprecationWarning, stacklevel=2
+            )
             if package is not None:
                 raise ValueError("specify one of 'package' or 'plugin', not both")
             package = plugin
@@ -295,7 +298,9 @@ def validate(config):
                 ),
                 optional={},
             )
-            warnings.warn("use 'package' instead of 'plugin'", DeprecationWarning)
+            warnings.warn(
+                "use 'package' instead of 'plugin'", DeprecationWarning, stacklevel=2
+            )
 
     @staticmethod
     def _handle_old_style_entry_points(library):

babelizer/render.py

@@ -1,16 +1,22 @@
 """Render a new babelized project."""
+
 import contextlib
 import os
 import pathlib
+import sys
 
 import black as blk
 import git
 import isort
-import pkg_resources
 import tomlkit as toml
 from cookiecutter.exceptions import OutputDirExistsException
 from cookiecutter.main import cookiecutter
 
+if sys.version_info >= (3, 12):  # pragma: no cover (PY12+)
+    import importlib.resources as importlib_resources
+else:  # pragma: no cover (<PY312)
+    import importlib_resources
+
 from .errors import OutputDirExistsError, RenderError
 
 
@@ -41,7 +47,7 @@ def render(plugin_metadata, output, template=None, clobber=False, version="0.1")
         Raised if output directory exists and clobber is not set.
     """
     if template is None:
-        template = pkg_resources.resource_filename("babelizer", "data")
+        template = str(importlib_resources.files("babelizer") / "data")
 
     try:
         path = render_plugin_repo(

babelizer/utils.py

@@ -1,4 +1,5 @@
 """Utility functions used by the babelizer."""
+
 import pathlib
 import subprocess
 import sys

docs/source/conf.py

@@ -12,7 +12,7 @@
 import pathlib
 import sys
 
-import pkg_resources
+from babelizer._version import __version__
 
 # -- Path setup --------------------------------------------------------------
 
@@ -28,7 +28,7 @@
 
 project = "babelizer"
 author = "Community Surface Dynamics Modeling System"
-version = pkg_resources.get_distribution("babelizer").version
+version = __version__
 release = version
 this_year = datetime.date.today().year
 copyright = f"{this_year}, {author}"