Check permamodel lesson (#65)

* Minor update to course description

* Make a start page for the permamodel lesson

* Update link to permamodel lesson start page

* Add missing config files for Ku example

Co-authored-by: nbgitpuller <[email protected]>

Author: mdpiper

README.md

@@ -7,7 +7,7 @@ CSDMS Ivy is a collection of instructional materials on
 * modern, collaborative, scientific software development, and
 * use of community cyberinfrastructure tools
 
-for scientists specializing in earth surface process modeling.
+for researchers in earth and planetary surface processes.
 
 CSDMS Ivy is
 written and maintained by the
@@ -94,7 +94,7 @@ CSDMS Ivy is supported with funding from the National Science Foundation.
 [bmi]: ./lessons/bmi/index.ipynb
 [landlab]: ./lessons/landlab/index.ipynb
 [pymt]: ./lessons/pymt/index.ipynb
-[permamodel]: ./lessons/permamodel
+[permamodel]: ./lessons/permamodel/index.ipynb
 [best-practices]: ./lessons/best-practices/index.md
 [hpc]: ./lessons/hpc/index.md
 [jhub-link]: https://lab.openearthscape.org/hub/user-redirect/git-pull?repo=https%3A%2F%2Fgithub.com%2Fcsdms%2Fivy&urlpath=lab%2Ftree%2Fivy%2Fstart.ipynb%3Fautodecode&branch=main

lessons/permamodel/index.ipynb

@@ -0,0 +1,72 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "<a href=\"https://csdms.colorado.edu\"><img style=\"float: center; width: 75%\" src=\"https://raw.githubusercontent.com/csdms/ivy/main/media/logo.png\"></a>"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "# Permamodel Toolkit\n",
+    "\n",
+    "The [Permamodel Toolkit](https://github.com/permamodel) is a collection of open source models and tools for studying the physics of permafrost-related processes.\n",
+    "Permamodel makes it easier for researchers to explore predictions of how melting permafrost might affect carbon release, wetlands, and river deltas as they evolve, and other interacting effects.\n",
+    "\n",
+    "Permamodel models run within the [Python Modeling Toolkit](https://pymt.readthedocs.io) (pymt)."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "## Using Permamodel\n",
+    "\n",
+    "* [The Ku Model](ku-eml-paleomip.ipynb)\n",
+    "  * Initializing Ku with data\n",
+    "  * Running Ku\n",
+    "  * Plotting output\n",
+    "\n",
+    "* [Coupling with Landlab](PFdepth-dependent-diffusion.ipynb)\n",
+    "  * Loading a DEM\n",
+    "  * Using Landlab with Ku outputs\n",
+    "  * Visualizing results"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "## Reference\n",
+    "\n",
+    "* Overeem, I., Jafarov, E., Wang, K., Schaefer, K., Stewart, S., Clow, G., Piper, M., and Elshorbany, Y. (2018), A modeling toolbox for permafrost landscapes, *Eos*, **99**, https://doi.org/10.1029/2018EO105155. Published on 28 September 2018.\n",
+    "* Wang, K., Jafarov, E., and Overeem, I. (2020), Sensitivity evaluation of the Kudryavtsev permafrost model, *Science of The Total Environment*, **720**, p. 137538, https://doi.org/10.1016/j.scitotenv.2020.137538.\n",
+    "* [Permamodel @ GitHub](https://github.com/permamodel)\n"
+   ]
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.9.4"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 4
+}