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Add configurable recycling steps and diffusion step count parameters #29

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Run time

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Job	Run time
lint	1m 15s
typecheck (boltz-dev)	1m 14s
tests (rf3-dev)	2m 25s
tests (protenix-dev)	4m 47s
typecheck (protenix-dev)	1m 49s
typecheck (rf3-dev)	1m 40s
tests (boltz-dev)	2m 30s
	15m 40s