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Add configurable recycling steps and diffusion step count parameters #30

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Run time

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Job	Run time
lint	1m 37s
typecheck (protenix-dev)	1m 2s
typecheck (boltz-dev)	1m 45s
tests (protenix-dev)	3m 26s
tests (boltz-dev)	2m 24s
tests (rf3-dev)	2m 15s
typecheck (rf3-dev)	1m 38s
	14m 7s