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Add configurable recycling steps and diffusion step count parameters #35

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Run time

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Job	Run time
typecheck (boltz-dev)	1m 21s
tests (rf3-dev)	1m 35s
tests (boltz-dev)	1m 49s
typecheck (protenix-dev)	1m 3s
tests (protenix-dev)	3m 32s
typecheck (rf3-dev)	1m 22s
lint	1m 2s
	11m 44s