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Add configurable recycling steps and diffusion step count parameters #36

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Run time

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Job	Run time
lint	1m 2s
typecheck (boltz-dev)	1m 5s
tests (rf3-dev)	1m 57s
tests (protenix-dev)	3m 39s
typecheck (rf3-dev)	1m 35s
typecheck (protenix-dev)	1m 17s
tests (boltz-dev)	1m 47s
	12m 22s