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Add configurable recycling steps and diffusion step count parameters … #37

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Run time

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Job	Run time
typecheck (protenix-dev)	1m 21s
lint	1m 5s
tests (boltz-dev)	1m 58s
tests (protenix-dev)	3m 36s
tests (rf3-dev)	1m 52s
typecheck (boltz-dev)	1m 19s
typecheck (rf3-dev)	1m 2s
	12m 13s