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feat: add RMSD metric #97

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Run time

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Job	Run time
lint	1m 7s
typecheck (rf3-dev)	1m 6s
typecheck (protenix-dev)	2m 46s
tests (rf3-dev)	2m 16s
tests (boltz-dev)	1m 57s
typecheck (boltz-dev)	1m 35s
tests (protenix-dev)	4m 8s
	14m 55s