sampleworks/.pre-commit-config.yaml at main · diff-use/sampleworks · GitHub

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repos:
  - repo: builtin
    hooks:
      - id: check-added-large-files
        exclude: \.(cif|pdb|ccp4|mtz|mrc)$
      - id: check-merge-conflict
      - id: check-yaml
      - id: end-of-file-fixer
      - id: trailing-whitespace
        exclude: \.(cif|pdb|ccp4|mtz|mrc)$

  - repo: local
    hooks:
      - id: sort_pyproject
        name: sort pyproject.toml
        entry: toml-sort
        args: ["-i", "--sort-table-keys", "--sort-inline-tables"]
        language: python
        files: ^pyproject\.toml$
        additional_dependencies:
          - toml-sort==0.24.3

  - repo: https://github.com/commitizen-tools/commitizen
    rev: v4.13.9
    hooks:
      - id: commitizen
        stages: [commit-msg]

  - repo: https://github.com/astral-sh/ruff-pre-commit
    rev: v0.15.0
    hooks:
      # Run the linter.
      - id: ruff-check
        args: [--verbose, --fix]
      # Run the formatter.
      - id: ruff-format
        args: [--verbose]

  - repo: local
    hooks:
      - id: ty-boltz
        name: ty (boltz environment)
        entry: bash -c 'pixi run -e boltz-dev ty check "$@"' --
        language: system
        types: [python]
        pass_filenames: true
        exclude: (real_space_density|protenix|rf3|rfd3)
        priority: 50

      - id: ty-rf3
        name: ty (rf3 environment)
        entry: bash -c 'pixi run -e rf3-dev ty check "$@"' --
        language: system
        types: [python]
        pass_filenames: true
        files: (rf3|rfd3)
        priority: 50

      - id: ty-protenix
        name: ty (protenix environment)
        entry: bash -c 'pixi run -e protenix-dev ty check "$@"' --
        language: system
        types: [python]
        pass_filenames: true
        files: protenix
        priority: 50