Our output from protenix appears to always rename chains in the output, making it harder to map them back to the original CIF in the patching script. Ideally we just keep the original lettering. Example RCSB ids with this problem are 2I6H, 4OLE, 6RP1, 720E, and 8Z76. 2I6H and 4OLE, for instance, are homo-multimers in the models, where we've selected a chain that isn't A. Protenix outputs chain A for these examples.
Our output from protenix appears to always rename chains in the output, making it harder to map them back to the original CIF in the patching script. Ideally we just keep the original lettering. Example RCSB ids with this problem are 2I6H, 4OLE, 6RP1, 720E, and 8Z76. 2I6H and 4OLE, for instance, are homo-multimers in the models, where we've selected a chain that isn't A. Protenix outputs chain A for these examples.