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Description
Hello,
I have a snp data for 22 individuals, .coord file has coordinates for the 22 individuals, .bim file has 2.4 SNPs, .outer is a coordinates for study area. my params.ini read like-
Paths
datapath = /pfs/home/pragya/pooja/hornbill/rufous_necked/analysis/EEMS
mcmcpath = /pfs/home/pragya/pooja/hornbill/rufous_necked/analysis/EEMS/output
Input files in datapath
coords = filtered_keep.coord # must match number/order of individuals in .fam
outer = study_area.outer
bedfile = filtered_keep # prefix of .bed/.bim/.fam
MCMC settings
nDemes = 300
nIterations = 2000000
nBurnIter = 1000000
nThin = 5000
Proposal variances
qEffctProposalS2 = 0.1
qRateProposalS2 = 0.1
mEffctProposalS2 = 0.1
mRateProposalS2 = 0.1
qSeedsProposalS2 = 0.1
mSeedsProposalS2 = 0.1
Others
nIndiv = 22
dfRate = 1000
dfEffct = 1000
on running runeems_snps --params params.ini
Error: Check that nSites >= nIndiv It would be great to get help in troubleshooting this error. Thanks