.gitmodules

[submodule "bwa_aligner"]
	path = bwa_aligner
	url = git@github.com:dmlond/bwa_aligner.git
[submodule "bwa_aligner_agent"]
	path = bwa_aligner_agent
	url = git@github.com:dmlond/bwa_aligner_agent.git
[submodule "bwa_plasmodium_data"]
	path = bwa_plasmodium_data
	url = git@github.com:dmlond/bwa_plasmodium_data.git
[submodule "bwa_reference_volume"]
	path = bwa_reference_volume
	url = git@github.com:dmlond/bwa_reference_volume.git
[submodule "bwa_reference"]
	path = bwa_reference
	url = git@github.com:dmlond/bwa_reference.git
[submodule "google_agent_base"]
	path = google_agent_base
	url = https://github.com/dmlond/google_agent_base
[submodule "split_raw"]
	path = split_raw
	url = git@github.com:dmlond/split_raw.git
[submodule "split_agent"]
	path = split_agent
	url = git@github.com:dmlond/split_agent.git
[submodule "bwa_samtools_base"]
	path = bwa_samtools_base
	url = git@github.com:dmlond/bwa_samtools_base.git
[submodule "mongo_agent_aligner/mongo_agent_alignment"]
	path = mongo_agent_aligner/mongo_agent_alignment
	url = git@github.com:dmlond/mongo_agent_alignment.git
[submodule "mongo_agent_aligner/mongo_agent_split_raw"]
	path = mongo_agent_aligner/mongo_agent_split_raw
	url = git@github.com:dmlond/mongo_agent_split_raw.git
[submodule "mongo_agent_aligner/mongo_agent_align_subset"]
	path = mongo_agent_aligner/mongo_agent_align_subset
	url = git@github.com:dmlond/mongo_agent_align_subset.git
[submodule "mongo_agent_aligner/mongo_agent_merge_bam"]
	path = mongo_agent_aligner/mongo_agent_merge_bam
	url = git@github.com:dmlond/mongo_agent_merge_bam.git
[submodule "mongo_agent_aligner/mongo_agent_merge_monitor"]
	path = mongo_agent_aligner/mongo_agent_merge_monitor
	url = git@github.com:dmlond/mongo_agent_merge_monitor.git
[submodule "mongo_agent_aligner/mongo_agent_seed_alignment"]
	path = mongo_agent_aligner/mongo_agent_seed_alignment
	url = https://github.com/dmlond/mongo_agent_seed_alignment.git
[submodule "mongo_agent_aligner/mongo_agent_watch_alignment"]
	path = mongo_agent_aligner/mongo_agent_watch_alignment
	url = https://github.com/dmlond/mongo_agent_watch_alignment.git
[submodule "mongo_agent_aligner/mongo_agent_seed_reference"]
	path = mongo_agent_aligner/mongo_agent_seed_reference
	url = https://github.com/dmlond/mongo_agent_seed_reference.git