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SIMULATION

Overview

Evolutionary and Population Genetics Simulation module for METAINFORMANT.

Contents

  • models/
  • visualization/
  • workflow/
  • [__init__.py](__init__.py)

Structure

graph TD
    subgraph "Simulation Module"
        M[models/] --> |sequences.py| SQ[Sequence Evolution]
        M --> |popgen.py| PG[Population Genetics]
        M --> |rna.py| RN[RNA-seq Counts]
        M --> |agents.py| AG[Agent-Based Ecosystems]

        W[workflow/] --> |workflow.py| WF[SimulationConfig & Orchestration]
        V[visualization/] --> |visualization.py| VZ[Simulation Plots]
        B[benchmark/] --> BM[Performance Benchmarks]
    end

    WF --> SQ
    WF --> PG
    WF --> RN
    WF --> AG
    SQ --> VZ
    PG --> VZ
    AG --> VZ
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Usage

Import module:

from metainformant.simulation import ...