Input PHOENIX structure

[tashrifbillah]

Hello @hre80 ,

Does this structure look okay for dplocate0?

Deleted to avoid future confusion

[hre80]

Hi, it is good up to A(subject). Then device (phone here). It branches to: raw and processed. Under raw gps and the .json file. The results go to processed later.

[hre80]

1- under raw "gps" and then the .json
2- the "processed" folder branches out after phone in Both GENERAL and PROTECTED. Some results we decided that needs to be protected and some could go to GENERAL, i.e. the output of dplocate4-plot

[tashrifbillah]

Some results we decided that needs to be protected and some could go to GENERAL, i.e. the output of dplocate4-plot

So should I be providing different --output-dir for different submodules?

[hre80]

No, already set in the pipeline. The --output-dir changes the main folders not this structure.

[tashrifbillah]

I manually created all the directories assuming the pipeline won't create any. Let me know if the assumption is not right.

dplocate-test/
├── GENERAL
│   └── BWH
│       ├── A
│       │   └── phone
│       │       └── processed
│       └── BWH_metadata.csv
└── PROTECTED
    └── BWH
        └── A
            └── phone
                ├── processed
                └── raw
                    └── gps
                        └── sensor_HRE.json

[hre80]

This is great. Under processed you don't need to build gps. The pipeline creates what is needed. Please make the "processed" folder w/r to the group (770) but the raw is only readable to others (710).

[tashrifbillah]

Under processed you don't need to build gps.

Deleting them to test the pipeline.

Update:
Test succeeded.

[hre80]

And yes needs to be done before the pipeline is applied. I thought it was part of the standard structure that lochness produces. If anything has been changed in this project, let me know and I can revise the defaults accordingly.

[tashrifbillah]

What is the _HRE suffix at the end of sensor_HRE.json by the way? Is it appended by user's phone/collecting software?

[hre80]

No, this is my initials. the collecting software (lochness I guess) can have any output format.

[tashrifbillah]

• Include the tree from https://github.com/dptools/dplocate/issues/4#issuecomment-906516616 in README.md or Wiki

[tashrifbillah]

Hi Habib,

We have created as much as https://github.com/dptools/dplocate/issues/4#issuecomment-906523854 for dplocate.

Now Kevin @kcho has pointed out that:
AMP-SCZ/lochness#49 (comment)

lochness.mindlamp does not creat gps subfolder.

1. Given that, how can we run dplocate based on lochness pulled data?
2. Is dplocate capable of obtaining input from BIDS PHOENIX structure?