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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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<div class="title">ERF_ComputeDiffusivityMYNN25.cpp File Reference</div> </div>
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<div class="contents">
<div class="textblock"><code>#include "<a class="el" href="ERF__ABLMost_8H_source.html">ERF_ABLMost.H</a>"</code><br />
<code>#include "<a class="el" href="ERF__DirectionSelector_8H_source.html">ERF_DirectionSelector.H</a>"</code><br />
<code>#include "<a class="el" href="ERF__Diffusion_8H_source.html">ERF_Diffusion.H</a>"</code><br />
<code>#include "<a class="el" href="ERF__Constants_8H_source.html">ERF_Constants.H</a>"</code><br />
<code>#include "<a class="el" href="ERF__TurbStruct_8H_source.html">ERF_TurbStruct.H</a>"</code><br />
<code>#include "<a class="el" href="ERF__PBLModels_8H_source.html">ERF_PBLModels.H</a>"</code><br />
</div><div class="textblock"><div class="dynheader">
Include dependency graph for ERF_ComputeDiffusivityMYNN25.cpp:</div>
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<div class="center"><img src="ERF__ComputeDiffusivityMYNN25_8cpp__incl.png" border="0" usemap="#aSource_2PBL_2ERF__ComputeDiffusivityMYNN25_8cpp" alt=""/></div>
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Functions</h2></td></tr>
<tr class="memitem:adcc6389bb07a9fa88881542c75625dd3"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="ERF__ComputeDiffusivityMYNN25_8cpp.html#adcc6389bb07a9fa88881542c75625dd3">ComputeDiffusivityMYNN25</a> (const MultiFab &xvel, const MultiFab &yvel, const MultiFab &cons_in, MultiFab &eddyViscosity, const Geometry &geom, const <a class="el" href="structTurbChoice.html">TurbChoice</a> &turbChoice, std::unique_ptr< <a class="el" href="classABLMost.html">ABLMost</a> > &most, bool use_terrain_fitted_coords, bool use_moisture, int level, const BCRec *bc_ptr, bool, const std::unique_ptr< MultiFab > &z_phys_nd, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp)</td></tr>
<tr class="separator:adcc6389bb07a9fa88881542c75625dd3"><td class="memSeparator" colspan="2"> </td></tr>
</table>
<h2 class="groupheader">Function Documentation</h2>
<a id="adcc6389bb07a9fa88881542c75625dd3"></a>
<h2 class="memtitle"><span class="permalink"><a href="#adcc6389bb07a9fa88881542c75625dd3">◆ </a></span>ComputeDiffusivityMYNN25()</h2>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname">void ComputeDiffusivityMYNN25 </td>
<td>(</td>
<td class="paramtype">const MultiFab & </td>
<td class="paramname"><em>xvel</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const MultiFab & </td>
<td class="paramname"><em>yvel</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const MultiFab & </td>
<td class="paramname"><em>cons_in</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">MultiFab & </td>
<td class="paramname"><em>eddyViscosity</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const Geometry & </td>
<td class="paramname"><em>geom</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const <a class="el" href="structTurbChoice.html">TurbChoice</a> & </td>
<td class="paramname"><em>turbChoice</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">std::unique_ptr< <a class="el" href="classABLMost.html">ABLMost</a> > & </td>
<td class="paramname"><em>most</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">bool </td>
<td class="paramname"><em>use_terrain_fitted_coords</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">bool </td>
<td class="paramname"><em>use_moisture</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">int </td>
<td class="paramname"><em>level</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const BCRec * </td>
<td class="paramname"><em>bc_ptr</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">bool </td>
<td class="paramname">, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const std::unique_ptr< MultiFab > & </td>
<td class="paramname"><em>z_phys_nd</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const int </td>
<td class="paramname"><em>RhoQv_comp</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const int </td>
<td class="paramname"><em>RhoQc_comp</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const int </td>
<td class="paramname"><em>RhoQr_comp</em> </td>
</tr>
<tr>
<td></td>
<td>)</td>
<td></td><td></td>
</tr>
</table>
</div><div class="memdoc">
<div class="fragment"><div class="line"><a name="l00027"></a><span class="lineno"> 27</span> {</div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span>  <span class="keyword">const</span> <span class="keywordtype">bool</span> use_most = (most != <span class="keyword">nullptr</span>);</div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span>  </div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span>  <span class="keyword">auto</span> mynn = turbChoice.<a class="code" href="structTurbChoice.html#a11fd9429567c4dd4afa871170580aed0">pbl_mynn</a>;</div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span>  <span class="keyword">auto</span> level2 = turbChoice.<a class="code" href="structTurbChoice.html#a475d862a63ab672577fc2429f535feb9">pbl_mynn_level2</a>;</div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span>  </div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span>  Real Lt_alpha = (mynn.config == <a class="code" href="ERF__MYNNStruct_8H.html#a103de8b695a78549c43fa852d9c4dd25abe8de8e777a612742c642b372ab3dc9e">MYNNConfigType::CHEN2021</a>) ? 0.1 : 0.23;</div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span>  </div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span>  <span class="comment">// Dirichlet flags to switch derivative stencil</span></div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span>  <span class="keywordtype">bool</span> c_ext_dir_on_zlo = ( (bc_ptr[<a class="code" href="namespaceBCVars.html#a00367571247ba920989360b94c156f4aaaf601346b01655b32acf66d07b856aec">BCVars::cons_bc</a>].lo(2) == <a class="code" href="namespaceERFBCType.html#a40fbdd5a379a92debb4bcaaccac6e01ca4b16988b22c277c9f812ddb5fb1539af">ERFBCType::ext_dir</a>) );</div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span>  <span class="keywordtype">bool</span> c_ext_dir_on_zhi = ( (bc_ptr[<a class="code" href="namespaceBCVars.html#a00367571247ba920989360b94c156f4aaaf601346b01655b32acf66d07b856aec">BCVars::cons_bc</a>].lo(5) == <a class="code" href="namespaceERFBCType.html#a40fbdd5a379a92debb4bcaaccac6e01ca4b16988b22c277c9f812ddb5fb1539af">ERFBCType::ext_dir</a>) );</div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span>  <span class="keywordtype">bool</span> u_ext_dir_on_zlo = ( (bc_ptr[<a class="code" href="namespaceBCVars.html#a00367571247ba920989360b94c156f4aab1782753c68aaad8632b0a7d575e57f4">BCVars::xvel_bc</a>].lo(2) == <a class="code" href="namespaceERFBCType.html#a40fbdd5a379a92debb4bcaaccac6e01ca4b16988b22c277c9f812ddb5fb1539af">ERFBCType::ext_dir</a>) );</div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span>  <span class="keywordtype">bool</span> u_ext_dir_on_zhi = ( (bc_ptr[<a class="code" href="namespaceBCVars.html#a00367571247ba920989360b94c156f4aab1782753c68aaad8632b0a7d575e57f4">BCVars::xvel_bc</a>].lo(5) == <a class="code" href="namespaceERFBCType.html#a40fbdd5a379a92debb4bcaaccac6e01ca4b16988b22c277c9f812ddb5fb1539af">ERFBCType::ext_dir</a>) );</div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span>  <span class="keywordtype">bool</span> v_ext_dir_on_zlo = ( (bc_ptr[<a class="code" href="namespaceBCVars.html#a00367571247ba920989360b94c156f4aa98ad22810fdfe9e585bc6481fc12454e">BCVars::yvel_bc</a>].lo(2) == <a class="code" href="namespaceERFBCType.html#a40fbdd5a379a92debb4bcaaccac6e01ca4b16988b22c277c9f812ddb5fb1539af">ERFBCType::ext_dir</a>) );</div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span>  <span class="keywordtype">bool</span> v_ext_dir_on_zhi = ( (bc_ptr[<a class="code" href="namespaceBCVars.html#a00367571247ba920989360b94c156f4aa98ad22810fdfe9e585bc6481fc12454e">BCVars::yvel_bc</a>].lo(5) == <a class="code" href="namespaceERFBCType.html#a40fbdd5a379a92debb4bcaaccac6e01ca4b16988b22c277c9f812ddb5fb1539af">ERFBCType::ext_dir</a>) );</div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span>  </div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span>  <span class="comment">// Epsilon</span></div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span>  Real eps = std::numeric_limits<Real>::epsilon();</div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span>  </div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span> <span class="preprocessor">#ifdef _OPENMP</span></div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span> <span class="preprocessor">#pragma omp parallel if (Gpu::notInLaunchRegion())</span></div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span>  <span class="keywordflow">for</span> ( MFIter mfi(eddyViscosity,TilingIfNotGPU()); mfi.isValid(); ++mfi) {</div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span>  </div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span>  <span class="keyword">const</span> Box &bx = mfi.growntilebox(1);</div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span>  <span class="keyword">const</span> Array4<Real const>& cell_data = cons_in.array(mfi);</div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span>  <span class="keyword">const</span> Array4<Real >& K_turb = eddyViscosity.array(mfi);</div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span>  <span class="keyword">const</span> Array4<Real const>& uvel = <a class="code" href="namespaceVars.html#a3e5e550795a0b745a4e43177e81f8c57a2a10a6e726515894b07621908abd4c0c">xvel</a>.array(mfi);</div>
<div class="line"><a name="l00055"></a><span class="lineno"> 55</span>  <span class="keyword">const</span> Array4<Real const>& vvel = <a class="code" href="namespaceVars.html#a3e5e550795a0b745a4e43177e81f8c57a81793b83204cfa56d4683bc676fbbfb6">yvel</a>.array(mfi);</div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span>  </div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span>  <span class="comment">// Compute some quantities that are constant in each column</span></div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span>  <span class="comment">// Sbox is shrunk to only include the interior of the domain in the vertical direction to compute integrals</span></div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span>  <span class="comment">// Box includes one ghost cell in each direction</span></div>
<div class="line"><a name="l00060"></a><span class="lineno"> 60</span>  <span class="keyword">const</span> Box &dbx = geom.Domain();</div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span>  Box sbx(bx.smallEnd(), bx.bigEnd());</div>
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span>  sbx.grow(2,-1);</div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span>  AMREX_ALWAYS_ASSERT(sbx.smallEnd(2) == dbx.smallEnd(2) && sbx.bigEnd(2) == dbx.bigEnd(2));</div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span>  </div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span>  <span class="keyword">const</span> GeometryData gdata = geom.data();</div>
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span>  </div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span>  <span class="keyword">const</span> Box xybx = PerpendicularBox<ZDir>(bx, IntVect{0,0,0});</div>
<div class="line"><a name="l00068"></a><span class="lineno"> 68</span>  FArrayBox qintegral(xybx,2);</div>
<div class="line"><a name="l00069"></a><span class="lineno"> 69</span>  qintegral.setVal<RunOn::Device>(0.0);</div>
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span>  FArrayBox qturb(bx,1); FArrayBox qturb_old(bx,1);</div>
<div class="line"><a name="l00071"></a><span class="lineno"> 71</span>  <span class="keyword">const</span> Array4<Real> qint = qintegral.array();</div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span>  <span class="keyword">const</span> Array4<Real> qvel = qturb.array();</div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span>  </div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span>  <span class="comment">// vertical integrals to compute lengthscale</span></div>
<div class="line"><a name="l00075"></a><span class="lineno"> 75</span>  <span class="keywordflow">if</span> (use_terrain_fitted_coords) {</div>
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span>  <span class="keyword">const</span> Array4<Real const> &z_nd_arr = z_phys_nd->array(mfi);</div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span>  <span class="keyword">const</span> <span class="keyword">auto</span> invCellSize = geom.InvCellSizeArray();</div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span>  ParallelFor(bx, [=] AMREX_GPU_DEVICE (<span class="keywordtype">int</span> i, <span class="keywordtype">int</span> j, <span class="keywordtype">int</span> k) noexcept</div>
<div class="line"><a name="l00079"></a><span class="lineno"> 79</span>  {</div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span>  qvel(i,j,k) = std::sqrt(2.0 * cell_data(i,j,k,<a class="code" href="ERF__IndexDefines_8H.html#ae15721db2cb4c2ab4732afe226bbba64">RhoKE_comp</a>) / cell_data(i,j,k,<a class="code" href="ERF__IndexDefines_8H.html#a27dcc910aeb002a0fd44727954dc0e49">Rho_comp</a>));</div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span>  AMREX_ASSERT_WITH_MESSAGE(qvel(i,j,k) > 0.0, <span class="stringliteral">"KE must have a positive value"</span>);</div>
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span>  </div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span>  Real fac = (sbx.contains(i,j,k)) ? 1.0 : 0.0;</div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span>  <span class="keyword">const</span> Real Zval = <a class="code" href="ERF__TerrainMetrics_8H.html#a41f9b3a5604791daf44935b10a55a565">Compute_Zrel_AtCellCenter</a>(i,j,k,z_nd_arr);</div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span>  <span class="keyword">const</span> Real dz = <a class="code" href="ERF__TerrainMetrics_8H.html#a32eeeb066c70da970aa6a60918515987">Compute_h_zeta_AtCellCenter</a>(i,j,k,invCellSize,z_nd_arr);</div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span>  Gpu::Atomic::Add(&qint(i,j,0,0), Zval*qvel(i,j,k)*dz*fac);</div>
<div class="line"><a name="l00087"></a><span class="lineno"> 87</span>  Gpu::Atomic::Add(&qint(i,j,0,1), qvel(i,j,k)*dz*fac);</div>
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span>  });</div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span>  } <span class="keywordflow">else</span> {</div>
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span>  ParallelFor(bx, [=] AMREX_GPU_DEVICE (<span class="keywordtype">int</span> i, <span class="keywordtype">int</span> j, <span class="keywordtype">int</span> k) noexcept</div>
<div class="line"><a name="l00091"></a><span class="lineno"> 91</span>  {</div>
<div class="line"><a name="l00092"></a><span class="lineno"> 92</span>  qvel(i,j,k) = std::sqrt(2.0 * cell_data(i,j,k,<a class="code" href="ERF__IndexDefines_8H.html#ae15721db2cb4c2ab4732afe226bbba64">RhoKE_comp</a>) / cell_data(i,j,k,<a class="code" href="ERF__IndexDefines_8H.html#a27dcc910aeb002a0fd44727954dc0e49">Rho_comp</a>));</div>
<div class="line"><a name="l00093"></a><span class="lineno"> 93</span>  AMREX_ASSERT_WITH_MESSAGE(qvel(i,j,k) > 0.0, <span class="stringliteral">"KE must have a positive value"</span>);</div>
<div class="line"><a name="l00094"></a><span class="lineno"> 94</span>  </div>
<div class="line"><a name="l00095"></a><span class="lineno"> 95</span>  <span class="comment">// Not multiplying by dz: its constant and would fall out when we divide qint0/qint1 anyway</span></div>
<div class="line"><a name="l00096"></a><span class="lineno"> 96</span>  </div>
<div class="line"><a name="l00097"></a><span class="lineno"> 97</span>  Real fac = (sbx.contains(i,j,k)) ? 1.0 : 0.0;</div>
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span>  <span class="keyword">const</span> Real Zval = gdata.ProbLo(2) + (k + 0.5)*gdata.CellSize(2);</div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span>  Gpu::Atomic::Add(&qint(i,j,0,0), Zval*qvel(i,j,k)*fac);</div>
<div class="line"><a name="l00100"></a><span class="lineno"> 100</span>  Gpu::Atomic::Add(&qint(i,j,0,1), qvel(i,j,k)*fac);</div>
<div class="line"><a name="l00101"></a><span class="lineno"> 101</span>  });</div>
<div class="line"><a name="l00102"></a><span class="lineno"> 102</span>  }</div>
<div class="line"><a name="l00103"></a><span class="lineno"> 103</span>  </div>
<div class="line"><a name="l00104"></a><span class="lineno"> 104</span>  Real dz_inv = geom.InvCellSize(2);</div>
<div class="line"><a name="l00105"></a><span class="lineno"> 105</span>  <span class="keyword">const</span> <span class="keyword">auto</span>& dxInv = geom.InvCellSizeArray();</div>
<div class="line"><a name="l00106"></a><span class="lineno"> 106</span>  <span class="keywordtype">int</span> izmin = geom.Domain().smallEnd(2);</div>
<div class="line"><a name="l00107"></a><span class="lineno"> 107</span>  <span class="keywordtype">int</span> izmax = geom.Domain().bigEnd(2);</div>
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span>  </div>
<div class="line"><a name="l00109"></a><span class="lineno"> 109</span>  <span class="comment">// Spatially varying MOST</span></div>
<div class="line"><a name="l00110"></a><span class="lineno"> 110</span>  Real d_kappa = <a class="code" href="ERF__Constants_8H.html#a0f51e1ef58cb9a3add46666cc98e6093">KAPPA</a>;</div>
<div class="line"><a name="l00111"></a><span class="lineno"> 111</span>  Real d_gravity = <a class="code" href="ERF__Constants_8H.html#ac2d0c304ab1117368778efcda612de43">CONST_GRAV</a>;</div>
<div class="line"><a name="l00112"></a><span class="lineno"> 112</span>  </div>
<div class="line"><a name="l00113"></a><span class="lineno"> 113</span>  <span class="keyword">const</span> <span class="keyword">auto</span>& t_mean_mf = most->get_mac_avg(level,4); <span class="comment">// theta_v</span></div>
<div class="line"><a name="l00114"></a><span class="lineno"> 114</span>  <span class="keyword">const</span> <span class="keyword">auto</span>& q_mean_mf = most->get_mac_avg(level,3); <span class="comment">// q_v</span></div>
<div class="line"><a name="l00115"></a><span class="lineno"> 115</span>  <span class="keyword">const</span> <span class="keyword">auto</span>& u_star_mf = most->get_u_star(level);</div>
<div class="line"><a name="l00116"></a><span class="lineno"> 116</span>  <span class="keyword">const</span> <span class="keyword">auto</span>& t_star_mf = most->get_t_star(level);</div>
<div class="line"><a name="l00117"></a><span class="lineno"> 117</span>  <span class="keyword">const</span> <span class="keyword">auto</span>& q_star_mf = most->get_q_star(level);</div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span>  </div>
<div class="line"><a name="l00119"></a><span class="lineno"> 119</span>  <span class="keyword">const</span> <span class="keyword">auto</span>& tm_arr = t_mean_mf->const_array(mfi);</div>
<div class="line"><a name="l00120"></a><span class="lineno"> 120</span>  <span class="keyword">const</span> <span class="keyword">auto</span>& qm_arr = q_mean_mf->const_array(mfi);</div>
<div class="line"><a name="l00121"></a><span class="lineno"> 121</span>  <span class="keyword">const</span> <span class="keyword">auto</span>& u_star_arr = u_star_mf->const_array(mfi);</div>
<div class="line"><a name="l00122"></a><span class="lineno"> 122</span>  <span class="keyword">const</span> <span class="keyword">auto</span>& t_star_arr = t_star_mf->const_array(mfi);</div>
<div class="line"><a name="l00123"></a><span class="lineno"> 123</span>  <span class="keyword">const</span> <span class="keyword">auto</span>& q_star_arr = (use_moisture) ? q_star_mf->const_array(mfi) : Array4<Real>{};</div>
<div class="line"><a name="l00124"></a><span class="lineno"> 124</span>  </div>
<div class="line"><a name="l00125"></a><span class="lineno"> 125</span>  <span class="keyword">const</span> Array4<Real const> z_nd_arr = z_phys_nd->const_array(mfi);</div>
<div class="line"><a name="l00126"></a><span class="lineno"> 126</span>  </div>
<div class="line"><a name="l00127"></a><span class="lineno"> 127</span>  ParallelFor(bx, [=] AMREX_GPU_DEVICE (<span class="keywordtype">int</span> i, <span class="keywordtype">int</span> j, <span class="keywordtype">int</span> k) noexcept</div>
<div class="line"><a name="l00128"></a><span class="lineno"> 128</span>  {</div>
<div class="line"><a name="l00129"></a><span class="lineno"> 129</span>  <span class="comment">// NOTE: With MOST, the ghost cells are filled AFTER k_turb is computed</span></div>
<div class="line"><a name="l00130"></a><span class="lineno"> 130</span>  <span class="comment">// so that the non-explicit pathway works. Therefore, at this</span></div>
<div class="line"><a name="l00131"></a><span class="lineno"> 131</span>  <span class="comment">// point we do NOT have valid ghost cells from MOST. We need to</span></div>
<div class="line"><a name="l00132"></a><span class="lineno"> 132</span>  <span class="comment">// pass the MOST flag to use one-sided diffs here.</span></div>
<div class="line"><a name="l00133"></a><span class="lineno"> 133</span>  </div>
<div class="line"><a name="l00134"></a><span class="lineno"> 134</span>  <span class="comment">// Compute some partial derivatives that we will need (second order)</span></div>
<div class="line"><a name="l00135"></a><span class="lineno"> 135</span>  <span class="comment">// U and V derivatives are interpolated to account for staggered grid</span></div>
<div class="line"><a name="l00136"></a><span class="lineno"> 136</span>  <span class="keyword">const</span> Real met_h_zeta = use_terrain_fitted_coords ? <a class="code" href="ERF__TerrainMetrics_8H.html#a32eeeb066c70da970aa6a60918515987">Compute_h_zeta_AtCellCenter</a>(i,j,k,dxInv,z_nd_arr) : 1.0;</div>
<div class="line"><a name="l00137"></a><span class="lineno"> 137</span>  Real dthetadz, dudz, dvdz;</div>
<div class="line"><a name="l00138"></a><span class="lineno"> 138</span>  <a class="code" href="ERF__PBLModels_8H.html#acb354f0d34a376d6c1769d0a3b1521d5">ComputeVerticalDerivativesPBL</a>(i, j, k,</div>
<div class="line"><a name="l00139"></a><span class="lineno"> 139</span>  uvel, vvel, cell_data, izmin, izmax, dz_inv/met_h_zeta,</div>
<div class="line"><a name="l00140"></a><span class="lineno"> 140</span>  c_ext_dir_on_zlo, c_ext_dir_on_zhi,</div>
<div class="line"><a name="l00141"></a><span class="lineno"> 141</span>  u_ext_dir_on_zlo, u_ext_dir_on_zhi,</div>
<div class="line"><a name="l00142"></a><span class="lineno"> 142</span>  v_ext_dir_on_zlo, v_ext_dir_on_zhi,</div>
<div class="line"><a name="l00143"></a><span class="lineno"> 143</span>  dthetadz, dudz, dvdz,</div>
<div class="line"><a name="l00144"></a><span class="lineno"> 144</span>  RhoQv_comp, RhoQc_comp, RhoQr_comp, use_most);</div>
<div class="line"><a name="l00145"></a><span class="lineno"> 145</span>  </div>
<div class="line"><a name="l00146"></a><span class="lineno"> 146</span>  <span class="comment">// Spatially varying MOST</span></div>
<div class="line"><a name="l00147"></a><span class="lineno"> 147</span>  Real theta0 = tm_arr(i,j,0);</div>
<div class="line"><a name="l00148"></a><span class="lineno"> 148</span>  Real qv0 = qm_arr(i,j,0);</div>
<div class="line"><a name="l00149"></a><span class="lineno"> 149</span>  Real surface_heat_flux = -u_star_arr(i,j,0) * t_star_arr(i,j,0);</div>
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span>  Real surface_latent_heat{0};</div>
<div class="line"><a name="l00151"></a><span class="lineno"> 151</span>  <span class="keywordflow">if</span> (use_moisture) {</div>
<div class="line"><a name="l00152"></a><span class="lineno"> 152</span>  <span class="comment">// Compute buoyancy flux (Stull Eqn. 4.4.5d)</span></div>
<div class="line"><a name="l00153"></a><span class="lineno"> 153</span>  surface_latent_heat = -u_star_arr(i,j,0) * q_star_arr(i,j,0);</div>
<div class="line"><a name="l00154"></a><span class="lineno"> 154</span>  surface_heat_flux *= (1.0 + 0.61*qv0);</div>
<div class="line"><a name="l00155"></a><span class="lineno"> 155</span>  surface_heat_flux += 0.61 * theta0 * surface_latent_heat;</div>
<div class="line"><a name="l00156"></a><span class="lineno"> 156</span>  }</div>
<div class="line"><a name="l00157"></a><span class="lineno"> 157</span>  </div>
<div class="line"><a name="l00158"></a><span class="lineno"> 158</span>  Real l_obukhov;</div>
<div class="line"><a name="l00159"></a><span class="lineno"> 159</span>  <span class="keywordflow">if</span> (std::abs(surface_heat_flux) > eps) {</div>
<div class="line"><a name="l00160"></a><span class="lineno"> 160</span>  l_obukhov = -( theta0 * u_star_arr(i,j,0)*u_star_arr(i,j,0)*u_star_arr(i,j,0) )</div>
<div class="line"><a name="l00161"></a><span class="lineno"> 161</span>  / ( d_kappa * d_gravity * surface_heat_flux );</div>
<div class="line"><a name="l00162"></a><span class="lineno"> 162</span>  } <span class="keywordflow">else</span> {</div>
<div class="line"><a name="l00163"></a><span class="lineno"> 163</span>  l_obukhov = std::numeric_limits<Real>::max();</div>
<div class="line"><a name="l00164"></a><span class="lineno"> 164</span>  }</div>
<div class="line"><a name="l00165"></a><span class="lineno"> 165</span>  </div>
<div class="line"><a name="l00166"></a><span class="lineno"> 166</span>  <span class="comment">// Surface-layer length scale (NN09, Eqn. 53)</span></div>
<div class="line"><a name="l00167"></a><span class="lineno"> 167</span>  AMREX_ASSERT(l_obukhov != 0);</div>
<div class="line"><a name="l00168"></a><span class="lineno"> 168</span>  <span class="keywordtype">int</span> lk = amrex::max(k,0);</div>
<div class="line"><a name="l00169"></a><span class="lineno"> 169</span>  <span class="keyword">const</span> Real zval = use_terrain_fitted_coords ? <a class="code" href="ERF__TerrainMetrics_8H.html#a41f9b3a5604791daf44935b10a55a565">Compute_Zrel_AtCellCenter</a>(i,j,lk,z_nd_arr)</div>
<div class="line"><a name="l00170"></a><span class="lineno"> 170</span>  : gdata.ProbLo(2) + (lk + 0.5)*gdata.CellSize(2);</div>
<div class="line"><a name="l00171"></a><span class="lineno"> 171</span>  <span class="keyword">const</span> Real zeta = zval/l_obukhov;</div>
<div class="line"><a name="l00172"></a><span class="lineno"> 172</span>  Real l_S;</div>
<div class="line"><a name="l00173"></a><span class="lineno"> 173</span>  <span class="keywordflow">if</span> (zeta >= 1.0) {</div>
<div class="line"><a name="l00174"></a><span class="lineno"> 174</span>  l_S = <a class="code" href="ERF__Constants_8H.html#a0f51e1ef58cb9a3add46666cc98e6093">KAPPA</a>*zval/3.7;</div>
<div class="line"><a name="l00175"></a><span class="lineno"> 175</span>  } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (zeta >= 0) {</div>
<div class="line"><a name="l00176"></a><span class="lineno"> 176</span>  l_S = <a class="code" href="ERF__Constants_8H.html#a0f51e1ef58cb9a3add46666cc98e6093">KAPPA</a>*zval/(1+2.7*zeta);</div>
<div class="line"><a name="l00177"></a><span class="lineno"> 177</span>  } <span class="keywordflow">else</span> {</div>
<div class="line"><a name="l00178"></a><span class="lineno"> 178</span>  l_S = <a class="code" href="ERF__Constants_8H.html#a0f51e1ef58cb9a3add46666cc98e6093">KAPPA</a>*zval*std::pow(1.0 - 100.0 * zeta, 0.2);</div>
<div class="line"><a name="l00179"></a><span class="lineno"> 179</span>  }</div>
<div class="line"><a name="l00180"></a><span class="lineno"> 180</span>  </div>
<div class="line"><a name="l00181"></a><span class="lineno"> 181</span>  <span class="comment">// ABL-depth length scale (NN09, Eqn. 54)</span></div>
<div class="line"><a name="l00182"></a><span class="lineno"> 182</span>  Real l_T;</div>
<div class="line"><a name="l00183"></a><span class="lineno"> 183</span>  <span class="keywordflow">if</span> (qint(i,j,0,1) > 0.0) {</div>
<div class="line"><a name="l00184"></a><span class="lineno"> 184</span>  l_T = Lt_alpha*qint(i,j,0,0)/qint(i,j,0,1);</div>
<div class="line"><a name="l00185"></a><span class="lineno"> 185</span>  } <span class="keywordflow">else</span> {</div>
<div class="line"><a name="l00186"></a><span class="lineno"> 186</span>  l_T = std::numeric_limits<Real>::max();</div>
<div class="line"><a name="l00187"></a><span class="lineno"> 187</span>  }</div>
<div class="line"><a name="l00188"></a><span class="lineno"> 188</span>  </div>
<div class="line"><a name="l00189"></a><span class="lineno"> 189</span>  <span class="comment">// Buoyancy length scale (NN09, Eqn. 55)</span></div>
<div class="line"><a name="l00190"></a><span class="lineno"> 190</span>  Real l_B;</div>
<div class="line"><a name="l00191"></a><span class="lineno"> 191</span>  <span class="keywordflow">if</span> (dthetadz > 0) {</div>
<div class="line"><a name="l00192"></a><span class="lineno"> 192</span>  Real N_brunt_vaisala = std::sqrt(<a class="code" href="ERF__Constants_8H.html#ac2d0c304ab1117368778efcda612de43">CONST_GRAV</a>/theta0 * dthetadz);</div>
<div class="line"><a name="l00193"></a><span class="lineno"> 193</span>  <span class="keywordflow">if</span> (zeta < 0) {</div>
<div class="line"><a name="l00194"></a><span class="lineno"> 194</span>  Real <a class="code" href="namespaceMicVar__SatAdj.html#ab8acc7ef47a63b5f03d4beeab01b214eaea3777efcbbb3712ce373924287c2cb3">qc</a> = <a class="code" href="ERF__Constants_8H.html#ac2d0c304ab1117368778efcda612de43">CONST_GRAV</a>/theta0 * surface_heat_flux * l_T; <span class="comment">// velocity scale</span></div>
<div class="line"><a name="l00195"></a><span class="lineno"> 195</span>  <a class="code" href="namespaceMicVar__SatAdj.html#ab8acc7ef47a63b5f03d4beeab01b214eaea3777efcbbb3712ce373924287c2cb3">qc</a> = std::pow(<a class="code" href="namespaceMicVar__SatAdj.html#ab8acc7ef47a63b5f03d4beeab01b214eaea3777efcbbb3712ce373924287c2cb3">qc</a>,1.0/3.0);</div>
<div class="line"><a name="l00196"></a><span class="lineno"> 196</span>  l_B = (1.0 + 5.0*std::sqrt(<a class="code" href="namespaceMicVar__SatAdj.html#ab8acc7ef47a63b5f03d4beeab01b214eaea3777efcbbb3712ce373924287c2cb3">qc</a>/(N_brunt_vaisala * l_T))) * qvel(i,j,k)/N_brunt_vaisala;</div>
<div class="line"><a name="l00197"></a><span class="lineno"> 197</span>  } <span class="keywordflow">else</span> {</div>
<div class="line"><a name="l00198"></a><span class="lineno"> 198</span>  l_B = qvel(i,j,k) / N_brunt_vaisala;</div>
<div class="line"><a name="l00199"></a><span class="lineno"> 199</span>  }</div>
<div class="line"><a name="l00200"></a><span class="lineno"> 200</span>  } <span class="keywordflow">else</span> {</div>
<div class="line"><a name="l00201"></a><span class="lineno"> 201</span>  l_B = std::numeric_limits<Real>::max();</div>
<div class="line"><a name="l00202"></a><span class="lineno"> 202</span>  }</div>
<div class="line"><a name="l00203"></a><span class="lineno"> 203</span>  </div>
<div class="line"><a name="l00204"></a><span class="lineno"> 204</span>  <span class="comment">// Master length scale</span></div>
<div class="line"><a name="l00205"></a><span class="lineno"> 205</span>  Real Lm;</div>
<div class="line"><a name="l00206"></a><span class="lineno"> 206</span>  <span class="keywordflow">if</span> (mynn.config == <a class="code" href="ERF__MYNNStruct_8H.html#a103de8b695a78549c43fa852d9c4dd25abe8de8e777a612742c642b372ab3dc9e">MYNNConfigType::CHEN2021</a>) {</div>
<div class="line"><a name="l00207"></a><span class="lineno"> 207</span>  Lm = std::pow(1.0/(l_S*l_S) + 1.0/(l_T*l_T) + 1.0/(l_B*l_B), -0.5);</div>
<div class="line"><a name="l00208"></a><span class="lineno"> 208</span>  } <span class="keywordflow">else</span> {</div>
<div class="line"><a name="l00209"></a><span class="lineno"> 209</span>  <span class="comment">// NN09, Eqn 52</span></div>
<div class="line"><a name="l00210"></a><span class="lineno"> 210</span>  Lm = 1.0 / (1.0/l_S + 1.0/l_T + 1.0/l_B);</div>
<div class="line"><a name="l00211"></a><span class="lineno"> 211</span>  }</div>
<div class="line"><a name="l00212"></a><span class="lineno"> 212</span>  </div>
<div class="line"><a name="l00213"></a><span class="lineno"> 213</span>  <span class="comment">// Calculate nondimensional production terms</span></div>
<div class="line"><a name="l00214"></a><span class="lineno"> 214</span>  Real shearProd = dudz*dudz + dvdz*dvdz;</div>
<div class="line"><a name="l00215"></a><span class="lineno"> 215</span>  Real buoyProd = -(<a class="code" href="ERF__Constants_8H.html#ac2d0c304ab1117368778efcda612de43">CONST_GRAV</a>/theta0) * dthetadz;</div>
<div class="line"><a name="l00216"></a><span class="lineno"> 216</span>  Real L2_over_q2 = Lm*Lm/(qvel(i,j,k)*qvel(i,j,k));</div>
<div class="line"><a name="l00217"></a><span class="lineno"> 217</span>  Real GM = L2_over_q2 * shearProd;</div>
<div class="line"><a name="l00218"></a><span class="lineno"> 218</span>  Real GH = L2_over_q2 * buoyProd;</div>
<div class="line"><a name="l00219"></a><span class="lineno"> 219</span>  </div>
<div class="line"><a name="l00220"></a><span class="lineno"> 220</span>  <span class="comment">// Equilibrium (Level-2) q calculation follows NN09, Appendix 2</span></div>
<div class="line"><a name="l00221"></a><span class="lineno"> 221</span>  Real Rf = level2.calc_Rf(GM, GH);</div>
<div class="line"><a name="l00222"></a><span class="lineno"> 222</span>  Real SM2 = level2.calc_SM(Rf);</div>
<div class="line"><a name="l00223"></a><span class="lineno"> 223</span>  Real qe2 = mynn.B1*Lm*Lm*SM2*(1.0-Rf)*shearProd;</div>
<div class="line"><a name="l00224"></a><span class="lineno"> 224</span>  Real qe = (qe2 < 0.0) ? 0.0 : std::sqrt(qe2);</div>
<div class="line"><a name="l00225"></a><span class="lineno"> 225</span>  </div>
<div class="line"><a name="l00226"></a><span class="lineno"> 226</span>  <span class="comment">// Level 2 limiting (Helfand and Labraga 1988)</span></div>
<div class="line"><a name="l00227"></a><span class="lineno"> 227</span>  Real alphac = (qvel(i,j,k) > qe) ? 1.0 : qvel(i,j,k) / (qe + eps);</div>
<div class="line"><a name="l00228"></a><span class="lineno"> 228</span>  </div>
<div class="line"><a name="l00229"></a><span class="lineno"> 229</span>  <span class="comment">// Level 2.5 stability functions</span></div>
<div class="line"><a name="l00230"></a><span class="lineno"> 230</span>  Real SM, SH, SQ;</div>
<div class="line"><a name="l00231"></a><span class="lineno"> 231</span>  mynn.calc_stability_funcs(SM,SH,SQ,GM,GH,alphac);</div>
<div class="line"><a name="l00232"></a><span class="lineno"> 232</span>  </div>
<div class="line"><a name="l00233"></a><span class="lineno"> 233</span>  <span class="comment">// Clip SM, SH following WRF</span></div>
<div class="line"><a name="l00234"></a><span class="lineno"> 234</span>  SM = amrex::min(amrex::max(SM,mynn.SMmin), mynn.SMmax);</div>
<div class="line"><a name="l00235"></a><span class="lineno"> 235</span>  SH = amrex::min(amrex::max(SH,mynn.SHmin), mynn.SHmax);</div>
<div class="line"><a name="l00236"></a><span class="lineno"> 236</span>  </div>
<div class="line"><a name="l00237"></a><span class="lineno"> 237</span>  <span class="comment">// Finally, compute the eddy viscosity/diffusivities</span></div>
<div class="line"><a name="l00238"></a><span class="lineno"> 238</span>  <span class="keyword">const</span> Real <a class="code" href="namespaceMicVar__Kess.html#a889f8349e0684381d06cc26a8b1f49ffa89de8c3bfc941080efb960e5119fbd61">rho</a> = cell_data(i,j,k,<a class="code" href="ERF__IndexDefines_8H.html#a27dcc910aeb002a0fd44727954dc0e49">Rho_comp</a>);</div>
<div class="line"><a name="l00239"></a><span class="lineno"> 239</span>  K_turb(i,j,k,<a class="code" href="namespaceEddyDiff.html#a45268689de46663ab6458f48c6878fc5a61ed124b350a1b26da1bd26aebfa5f82">EddyDiff::Mom_v</a>) = <a class="code" href="namespaceMicVar__Kess.html#a889f8349e0684381d06cc26a8b1f49ffa89de8c3bfc941080efb960e5119fbd61">rho</a> * Lm * qvel(i,j,k) * SM;</div>
<div class="line"><a name="l00240"></a><span class="lineno"> 240</span>  K_turb(i,j,k,<a class="code" href="namespaceEddyDiff.html#a45268689de46663ab6458f48c6878fc5a0af64d676c5c6f4312eb892f9a7a46cd">EddyDiff::Theta_v</a>) = <a class="code" href="namespaceMicVar__Kess.html#a889f8349e0684381d06cc26a8b1f49ffa89de8c3bfc941080efb960e5119fbd61">rho</a> * Lm * qvel(i,j,k) * SH;</div>
<div class="line"><a name="l00241"></a><span class="lineno"> 241</span>  K_turb(i,j,k,<a class="code" href="namespaceEddyDiff.html#a45268689de46663ab6458f48c6878fc5a937c191d351b2c26cd7ea07878978b94">EddyDiff::KE_v</a>) = <a class="code" href="namespaceMicVar__Kess.html#a889f8349e0684381d06cc26a8b1f49ffa89de8c3bfc941080efb960e5119fbd61">rho</a> * Lm * qvel(i,j,k) * SQ;</div>
<div class="line"><a name="l00242"></a><span class="lineno"> 242</span>  </div>
<div class="line"><a name="l00243"></a><span class="lineno"> 243</span>  <span class="comment">// TODO: implement partial-condensation scheme?</span></div>
<div class="line"><a name="l00244"></a><span class="lineno"> 244</span>  <span class="comment">// Currently, implementation matches NN09 without rain (i.e.,</span></div>
<div class="line"><a name="l00245"></a><span class="lineno"> 245</span>  <span class="comment">// the liquid water potential temperature is equal to the</span></div>
<div class="line"><a name="l00246"></a><span class="lineno"> 246</span>  <span class="comment">// potential temperature.</span></div>
<div class="line"><a name="l00247"></a><span class="lineno"> 247</span>  </div>
<div class="line"><a name="l00248"></a><span class="lineno"> 248</span>  <span class="comment">// NN09 gives the total water content flux; this assumes that</span></div>
<div class="line"><a name="l00249"></a><span class="lineno"> 249</span>  <span class="comment">// all the species have the same eddy diffusivity</span></div>
<div class="line"><a name="l00250"></a><span class="lineno"> 250</span>  <span class="keywordflow">if</span> (mynn.diffuse_moistvars) {</div>
<div class="line"><a name="l00251"></a><span class="lineno"> 251</span>  K_turb(i,j,k,<a class="code" href="namespaceEddyDiff.html#a45268689de46663ab6458f48c6878fc5a4166b9561a2ef0ad6d1b6d2c34cb9580">EddyDiff::Q_v</a>) = <a class="code" href="namespaceMicVar__Kess.html#a889f8349e0684381d06cc26a8b1f49ffa89de8c3bfc941080efb960e5119fbd61">rho</a> * Lm * qvel(i,j,k) * SH;</div>
<div class="line"><a name="l00252"></a><span class="lineno"> 252</span>  }</div>
<div class="line"><a name="l00253"></a><span class="lineno"> 253</span>  </div>
<div class="line"><a name="l00254"></a><span class="lineno"> 254</span>  K_turb(i,j,k,<a class="code" href="namespaceEddyDiff.html#a45268689de46663ab6458f48c6878fc5a1fd996857fe3699ac7f9454e88d6ae76">EddyDiff::Turb_lengthscale</a>) = Lm;</div>
<div class="line"><a name="l00255"></a><span class="lineno"> 255</span>  });</div>
<div class="line"><a name="l00256"></a><span class="lineno"> 256</span>  }</div>
<div class="line"><a name="l00257"></a><span class="lineno"> 257</span> }</div>
<div class="ttc" id="aERF__Constants_8H_html_a0f51e1ef58cb9a3add46666cc98e6093"><div class="ttname"><a href="ERF__Constants_8H.html#a0f51e1ef58cb9a3add46666cc98e6093">KAPPA</a></div><div class="ttdeci">constexpr amrex::Real KAPPA</div><div class="ttdef"><b>Definition:</b> ERF_Constants.H:20</div></div>
<div class="ttc" id="aERF__Constants_8H_html_ac2d0c304ab1117368778efcda612de43"><div class="ttname"><a href="ERF__Constants_8H.html#ac2d0c304ab1117368778efcda612de43">CONST_GRAV</a></div><div class="ttdeci">constexpr amrex::Real CONST_GRAV</div><div class="ttdef"><b>Definition:</b> ERF_Constants.H:21</div></div>
<div class="ttc" id="aERF__IndexDefines_8H_html_a27dcc910aeb002a0fd44727954dc0e49"><div class="ttname"><a href="ERF__IndexDefines_8H.html#a27dcc910aeb002a0fd44727954dc0e49">Rho_comp</a></div><div class="ttdeci">#define Rho_comp</div><div class="ttdef"><b>Definition:</b> ERF_IndexDefines.H:36</div></div>
<div class="ttc" id="aERF__IndexDefines_8H_html_ae15721db2cb4c2ab4732afe226bbba64"><div class="ttname"><a href="ERF__IndexDefines_8H.html#ae15721db2cb4c2ab4732afe226bbba64">RhoKE_comp</a></div><div class="ttdeci">#define RhoKE_comp</div><div class="ttdef"><b>Definition:</b> ERF_IndexDefines.H:38</div></div>
<div class="ttc" id="aERF__MYNNStruct_8H_html_a103de8b695a78549c43fa852d9c4dd25abe8de8e777a612742c642b372ab3dc9e"><div class="ttname"><a href="ERF__MYNNStruct_8H.html#a103de8b695a78549c43fa852d9c4dd25abe8de8e777a612742c642b372ab3dc9e">MYNNConfigType::CHEN2021</a></div><div class="ttdeci">@ CHEN2021</div></div>
<div class="ttc" id="aERF__PBLModels_8H_html_acb354f0d34a376d6c1769d0a3b1521d5"><div class="ttname"><a href="ERF__PBLModels_8H.html#acb354f0d34a376d6c1769d0a3b1521d5">ComputeVerticalDerivativesPBL</a></div><div class="ttdeci">AMREX_GPU_DEVICE AMREX_FORCE_INLINE void ComputeVerticalDerivativesPBL(int i, int j, int k, const amrex::Array4< const amrex::Real > &uvel, const amrex::Array4< const amrex::Real > &vvel, const amrex::Array4< const amrex::Real > &cell_data, const int izmin, const int izmax, const amrex::Real &dz_inv, const bool c_ext_dir_on_zlo, const bool c_ext_dir_on_zhi, const bool u_ext_dir_on_zlo, const bool u_ext_dir_on_zhi, const bool v_ext_dir_on_zlo, const bool v_ext_dir_on_zhi, amrex::Real &dthetadz, amrex::Real &dudz, amrex::Real &dvdz, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp, const bool use_most=true)</div><div class="ttdef"><b>Definition:</b> ERF_PBLModels.H:119</div></div>
<div class="ttc" id="aERF__TerrainMetrics_8H_html_a32eeeb066c70da970aa6a60918515987"><div class="ttname"><a href="ERF__TerrainMetrics_8H.html#a32eeeb066c70da970aa6a60918515987">Compute_h_zeta_AtCellCenter</a></div><div class="ttdeci">AMREX_FORCE_INLINE AMREX_GPU_DEVICE amrex::Real Compute_h_zeta_AtCellCenter(const int &i, const int &j, const int &k, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, const amrex::Array4< const amrex::Real > &z_nd)</div><div class="ttdef"><b>Definition:</b> ERF_TerrainMetrics.H:46</div></div>
<div class="ttc" id="aERF__TerrainMetrics_8H_html_a41f9b3a5604791daf44935b10a55a565"><div class="ttname"><a href="ERF__TerrainMetrics_8H.html#a41f9b3a5604791daf44935b10a55a565">Compute_Zrel_AtCellCenter</a></div><div class="ttdeci">AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real Compute_Zrel_AtCellCenter(const int &i, const int &j, const int &k, const amrex::Array4< const amrex::Real > &z_nd)</div><div class="ttdef"><b>Definition:</b> ERF_TerrainMetrics.H:359</div></div>
<div class="ttc" id="anamespaceBCVars_html_a00367571247ba920989360b94c156f4aa98ad22810fdfe9e585bc6481fc12454e"><div class="ttname"><a href="namespaceBCVars.html#a00367571247ba920989360b94c156f4aa98ad22810fdfe9e585bc6481fc12454e">BCVars::yvel_bc</a></div><div class="ttdeci">@ yvel_bc</div><div class="ttdef"><b>Definition:</b> ERF_IndexDefines.H:88</div></div>
<div class="ttc" id="anamespaceBCVars_html_a00367571247ba920989360b94c156f4aaaf601346b01655b32acf66d07b856aec"><div class="ttname"><a href="namespaceBCVars.html#a00367571247ba920989360b94c156f4aaaf601346b01655b32acf66d07b856aec">BCVars::cons_bc</a></div><div class="ttdeci">@ cons_bc</div><div class="ttdef"><b>Definition:</b> ERF_IndexDefines.H:76</div></div>
<div class="ttc" id="anamespaceBCVars_html_a00367571247ba920989360b94c156f4aab1782753c68aaad8632b0a7d575e57f4"><div class="ttname"><a href="namespaceBCVars.html#a00367571247ba920989360b94c156f4aab1782753c68aaad8632b0a7d575e57f4">BCVars::xvel_bc</a></div><div class="ttdeci">@ xvel_bc</div><div class="ttdef"><b>Definition:</b> ERF_IndexDefines.H:87</div></div>
<div class="ttc" id="anamespaceERFBCType_html_a40fbdd5a379a92debb4bcaaccac6e01ca4b16988b22c277c9f812ddb5fb1539af"><div class="ttname"><a href="namespaceERFBCType.html#a40fbdd5a379a92debb4bcaaccac6e01ca4b16988b22c277c9f812ddb5fb1539af">ERFBCType::ext_dir</a></div><div class="ttdeci">@ ext_dir</div><div class="ttdef"><b>Definition:</b> ERF_IndexDefines.H:191</div></div>
<div class="ttc" id="anamespaceEddyDiff_html_a45268689de46663ab6458f48c6878fc5a0af64d676c5c6f4312eb892f9a7a46cd"><div class="ttname"><a href="namespaceEddyDiff.html#a45268689de46663ab6458f48c6878fc5a0af64d676c5c6f4312eb892f9a7a46cd">EddyDiff::Theta_v</a></div><div class="ttdeci">@ Theta_v</div><div class="ttdef"><b>Definition:</b> ERF_IndexDefines.H:168</div></div>
<div class="ttc" id="anamespaceEddyDiff_html_a45268689de46663ab6458f48c6878fc5a1fd996857fe3699ac7f9454e88d6ae76"><div class="ttname"><a href="namespaceEddyDiff.html#a45268689de46663ab6458f48c6878fc5a1fd996857fe3699ac7f9454e88d6ae76">EddyDiff::Turb_lengthscale</a></div><div class="ttdeci">@ Turb_lengthscale</div><div class="ttdef"><b>Definition:</b> ERF_IndexDefines.H:172</div></div>
<div class="ttc" id="anamespaceEddyDiff_html_a45268689de46663ab6458f48c6878fc5a4166b9561a2ef0ad6d1b6d2c34cb9580"><div class="ttname"><a href="namespaceEddyDiff.html#a45268689de46663ab6458f48c6878fc5a4166b9561a2ef0ad6d1b6d2c34cb9580">EddyDiff::Q_v</a></div><div class="ttdeci">@ Q_v</div><div class="ttdef"><b>Definition:</b> ERF_IndexDefines.H:171</div></div>
<div class="ttc" id="anamespaceEddyDiff_html_a45268689de46663ab6458f48c6878fc5a61ed124b350a1b26da1bd26aebfa5f82"><div class="ttname"><a href="namespaceEddyDiff.html#a45268689de46663ab6458f48c6878fc5a61ed124b350a1b26da1bd26aebfa5f82">EddyDiff::Mom_v</a></div><div class="ttdeci">@ Mom_v</div><div class="ttdef"><b>Definition:</b> ERF_IndexDefines.H:167</div></div>
<div class="ttc" id="anamespaceEddyDiff_html_a45268689de46663ab6458f48c6878fc5a937c191d351b2c26cd7ea07878978b94"><div class="ttname"><a href="namespaceEddyDiff.html#a45268689de46663ab6458f48c6878fc5a937c191d351b2c26cd7ea07878978b94">EddyDiff::KE_v</a></div><div class="ttdeci">@ KE_v</div><div class="ttdef"><b>Definition:</b> ERF_IndexDefines.H:169</div></div>
<div class="ttc" id="anamespaceMicVar__Kess_html_a889f8349e0684381d06cc26a8b1f49ffa89de8c3bfc941080efb960e5119fbd61"><div class="ttname"><a href="namespaceMicVar__Kess.html#a889f8349e0684381d06cc26a8b1f49ffa89de8c3bfc941080efb960e5119fbd61">MicVar_Kess::rho</a></div><div class="ttdeci">@ rho</div><div class="ttdef"><b>Definition:</b> ERF_Kessler.H:22</div></div>
<div class="ttc" id="anamespaceMicVar__SatAdj_html_ab8acc7ef47a63b5f03d4beeab01b214eaea3777efcbbb3712ce373924287c2cb3"><div class="ttname"><a href="namespaceMicVar__SatAdj.html#ab8acc7ef47a63b5f03d4beeab01b214eaea3777efcbbb3712ce373924287c2cb3">MicVar_SatAdj::qc</a></div><div class="ttdeci">@ qc</div><div class="ttdef"><b>Definition:</b> ERF_SatAdj.H:36</div></div>
<div class="ttc" id="anamespaceVars_html_a3e5e550795a0b745a4e43177e81f8c57a2a10a6e726515894b07621908abd4c0c"><div class="ttname"><a href="namespaceVars.html#a3e5e550795a0b745a4e43177e81f8c57a2a10a6e726515894b07621908abd4c0c">Vars::xvel</a></div><div class="ttdeci">@ xvel</div><div class="ttdef"><b>Definition:</b> ERF_IndexDefines.H:141</div></div>
<div class="ttc" id="anamespaceVars_html_a3e5e550795a0b745a4e43177e81f8c57a81793b83204cfa56d4683bc676fbbfb6"><div class="ttname"><a href="namespaceVars.html#a3e5e550795a0b745a4e43177e81f8c57a81793b83204cfa56d4683bc676fbbfb6">Vars::yvel</a></div><div class="ttdeci">@ yvel</div><div class="ttdef"><b>Definition:</b> ERF_IndexDefines.H:142</div></div>
<div class="ttc" id="astructTurbChoice_html_a11fd9429567c4dd4afa871170580aed0"><div class="ttname"><a href="structTurbChoice.html#a11fd9429567c4dd4afa871170580aed0">TurbChoice::pbl_mynn</a></div><div class="ttdeci">MYNNLevel25 pbl_mynn</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:242</div></div>
<div class="ttc" id="astructTurbChoice_html_a475d862a63ab672577fc2429f535feb9"><div class="ttname"><a href="structTurbChoice.html#a475d862a63ab672577fc2429f535feb9">TurbChoice::pbl_mynn_level2</a></div><div class="ttdeci">MYNNLevel2 pbl_mynn_level2</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:243</div></div>
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<p class="reference">Referenced by <a class="el" href="ERF__ComputeTurbulentViscosity_8cpp.html#ab682a12550cbc038e95af12eeaaf49da">ComputeTurbulentViscosity()</a>.</p>
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