-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathERF__ComputeTurbulentViscosity_8cpp.html
1474 lines (1466 loc) · 165 KB
/
ERF__ComputeTurbulentViscosity_8cpp.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
<meta http-equiv="X-UA-Compatible" content="IE=9"/>
<meta name="generator" content="Doxygen 1.9.1"/>
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<title>ERF: Source/Diffusion/ERF_ComputeTurbulentViscosity.cpp File Reference</title>
<link href="tabs.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="jquery.js"></script>
<script type="text/javascript" src="dynsections.js"></script>
<link href="navtree.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="resize.js"></script>
<script type="text/javascript" src="navtreedata.js"></script>
<script type="text/javascript" src="navtree.js"></script>
<link href="search/search.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="search/searchdata.js"></script>
<script type="text/javascript" src="search/search.js"></script>
<link href="doxygen.css" rel="stylesheet" type="text/css" />
</head>
<body>
<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
<div id="titlearea">
<table cellspacing="0" cellpadding="0">
<tbody>
<tr style="height: 56px;">
<td id="projectalign" style="padding-left: 0.5em;">
<div id="projectname">ERF
</div>
<div id="projectbrief">Energy Research and Forecasting: An Atmospheric Modeling Code</div>
</td>
</tr>
</tbody>
</table>
</div>
<!-- end header part -->
<!-- Generated by Doxygen 1.9.1 -->
<script type="text/javascript">
/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&dn=gpl-2.0.txt GPL-v2 */
var searchBox = new SearchBox("searchBox", "search",false,'Search','.html');
/* @license-end */
</script>
<script type="text/javascript" src="menudata.js"></script>
<script type="text/javascript" src="menu.js"></script>
<script type="text/javascript">
/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&dn=gpl-2.0.txt GPL-v2 */
$(function() {
initMenu('',true,false,'search.php','Search');
$(document).ready(function() { init_search(); });
});
/* @license-end */</script>
<div id="main-nav"></div>
</div><!-- top -->
<div id="side-nav" class="ui-resizable side-nav-resizable">
<div id="nav-tree">
<div id="nav-tree-contents">
<div id="nav-sync" class="sync"></div>
</div>
</div>
<div id="splitbar" style="-moz-user-select:none;"
class="ui-resizable-handle">
</div>
</div>
<script type="text/javascript">
/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&dn=gpl-2.0.txt GPL-v2 */
$(document).ready(function(){initNavTree('ERF__ComputeTurbulentViscosity_8cpp.html',''); initResizable(); });
/* @license-end */
</script>
<div id="doc-content">
<!-- window showing the filter options -->
<div id="MSearchSelectWindow"
onmouseover="return searchBox.OnSearchSelectShow()"
onmouseout="return searchBox.OnSearchSelectHide()"
onkeydown="return searchBox.OnSearchSelectKey(event)">
</div>
<!-- iframe showing the search results (closed by default) -->
<div id="MSearchResultsWindow">
<iframe src="javascript:void(0)" frameborder="0"
name="MSearchResults" id="MSearchResults">
</iframe>
</div>
<div class="header">
<div class="summary">
<a href="#func-members">Functions</a> </div>
<div class="headertitle">
<div class="title">ERF_ComputeTurbulentViscosity.cpp File Reference</div> </div>
</div><!--header-->
<div class="contents">
<div class="textblock"><code>#include <<a class="el" href="ERF__ABLMost_8H_source.html">ERF_ABLMost.H</a>></code><br />
<code>#include <<a class="el" href="ERF__EddyViscosity_8H_source.html">ERF_EddyViscosity.H</a>></code><br />
<code>#include <<a class="el" href="ERF__Diffusion_8H_source.html">ERF_Diffusion.H</a>></code><br />
<code>#include <<a class="el" href="ERF__PBLModels_8H_source.html">ERF_PBLModels.H</a>></code><br />
<code>#include <<a class="el" href="ERF__TileNoZ_8H_source.html">ERF_TileNoZ.H</a>></code><br />
<code>#include <<a class="el" href="ERF__TerrainMetrics_8H_source.html">ERF_TerrainMetrics.H</a>></code><br />
</div><div class="textblock"><div class="dynheader">
Include dependency graph for ERF_ComputeTurbulentViscosity.cpp:</div>
<div class="dyncontent">
<div class="center"><img src="ERF__ComputeTurbulentViscosity_8cpp__incl.png" border="0" usemap="#aSource_2Diffusion_2ERF__ComputeTurbulentViscosity_8cpp" alt=""/></div>
<map name="aSource_2Diffusion_2ERF__ComputeTurbulentViscosity_8cpp" id="aSource_2Diffusion_2ERF__ComputeTurbulentViscosity_8cpp">
<area shape="rect" title=" " alt="" coords="1435,5,1667,47"/>
<area shape="rect" href="ERF__ABLMost_8H.html" title=" " alt="" coords="1083,169,1208,196"/>
<area shape="rect" href="ERF__TerrainMetrics_8H.html" title=" " alt="" coords="624,319,784,345"/>
<area shape="rect" href="ERF__TileNoZ_8H.html" title=" " alt="" coords="2438,468,2557,495"/>
<area shape="rect" href="ERF__EddyViscosity_8H.html" title=" " alt="" coords="1556,95,1713,121"/>
<area shape="rect" href="ERF__Diffusion_8H.html" title=" " alt="" coords="1405,95,1531,121"/>
<area shape="rect" href="ERF__PBLModels_8H.html" title=" " alt="" coords="2264,169,2403,196"/>
<area shape="rect" title=" " alt="" coords="902,468,1055,495"/>
<area shape="rect" title=" " alt="" coords="1247,468,1406,495"/>
<area shape="rect" title=" " alt="" coords="1185,319,1341,345"/>
<area shape="rect" title=" " alt="" coords="523,393,669,420"/>
<area shape="rect" title=" " alt="" coords="808,319,957,345"/>
<area shape="rect" title=" " alt="" coords="876,244,1041,271"/>
<area shape="rect" href="ERF__IndexDefines_8H.html" title=" " alt="" coords="517,468,670,495"/>
<area shape="rect" href="ERF__Constants_8H.html" title=" " alt="" coords="227,468,360,495"/>
<area shape="rect" href="ERF__MOSTAverage_8H.html" title=" " alt="" coords="1066,244,1225,271"/>
<area shape="rect" href="ERF__MOSTStress_8H.html" title=" " alt="" coords="220,319,367,345"/>
<area shape="rect" href="ERF__PBLHeight_8H.html" title=" " alt="" coords="2341,244,2475,271"/>
<area shape="rect" title=" " alt="" coords="283,543,405,569"/>
<area shape="rect" title=" " alt="" coords="529,543,657,569"/>
<area shape="rect" title=" " alt="" coords="1442,468,1558,495"/>
<area shape="rect" href="ERF__DataStruct_8H.html" title=" " alt="" coords="1554,319,1691,345"/>
<area shape="rect" title=" " alt="" coords="1121,543,1204,569"/>
<area shape="rect" title=" " alt="" coords="1831,468,1889,495"/>
<area shape="rect" title=" " alt="" coords="1583,468,1663,495"/>
<area shape="rect" title=" " alt="" coords="1687,468,1807,495"/>
<area shape="rect" href="ERF__AdvStruct_8H.html" title=" " alt="" coords="1352,393,1483,420"/>
<area shape="rect" href="ERF__DiffStruct_8H.html" title=" " alt="" coords="1558,393,1687,420"/>
<area shape="rect" href="ERF__SpongeStruct_8H.html" title=" " alt="" coords="1712,393,1867,420"/>
<area shape="rect" href="ERF__TurbStruct_8H.html" title=" " alt="" coords="2043,393,2176,420"/>
<area shape="rect" href="ERF__TurbPertStruct_8H.html" title=" " alt="" coords="2201,393,2359,420"/>
<area shape="rect" href="ERF__MYNNStruct_8H.html" title=" " alt="" coords="1987,468,2133,495"/>
<area shape="rect" title=" " alt="" coords="2245,468,2413,495"/>
<area shape="rect" title=" " alt="" coords="2157,468,2221,495"/>
<area shape="rect" href="ERF__MOSTRoughness_8H.html" title=" " alt="" coords="39,393,217,420"/>
<area shape="rect" href="ERF__Wstar_8H.html" title=" " alt="" coords="241,393,346,420"/>
<area shape="rect" href="ERF__Thetav_8H.html" title=" " alt="" coords="2485,319,2597,345"/>
<area shape="rect" title=" " alt="" coords="1569,169,1701,196"/>
</map>
</div>
</div><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
Functions</h2></td></tr>
<tr class="memitem:acd9320f37597f453446a1e7e74804d0d"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="ERF__ComputeTurbulentViscosity_8cpp.html#acd9320f37597f453446a1e7e74804d0d">ComputeTurbulentViscosityLES</a> (const MultiFab &Tau11, const MultiFab &Tau22, const MultiFab &Tau33, const MultiFab &Tau12, const MultiFab &Tau13, const MultiFab &Tau23, const MultiFab &cons_in, MultiFab &eddyViscosity, MultiFab &Hfx1, MultiFab &Hfx2, MultiFab &Hfx3, MultiFab &Diss, const Geometry &geom, bool use_terrain, const MultiFab &mapfac_u, const MultiFab &mapfac_v, const std::unique_ptr< MultiFab > &z_phys_nd, const <a class="el" href="structTurbChoice.html">TurbChoice</a> &turbChoice, const Real const_grav, std::unique_ptr< <a class="el" href="classABLMost.html">ABLMost</a> > &most, const bool &exp_most)</td></tr>
<tr class="separator:acd9320f37597f453446a1e7e74804d0d"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a31dc0d2de3f7359bd296ad78bd179f6f"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="ERF__ComputeTurbulentViscosity_8cpp.html#a31dc0d2de3f7359bd296ad78bd179f6f">ComputeTurbulentViscosityRANS</a> (const MultiFab &, const MultiFab &, const MultiFab &, const MultiFab &, const MultiFab &, const MultiFab &, const MultiFab &cons_in, const MultiFab &wdist, MultiFab &eddyViscosity, MultiFab &Hfx1, MultiFab &Hfx2, MultiFab &Hfx3, MultiFab &Diss, const Geometry &geom, bool use_terrain, const MultiFab &, const MultiFab &, const std::unique_ptr< MultiFab > &z_phys_nd, const <a class="el" href="structTurbChoice.html">TurbChoice</a> &turbChoice, const Real const_grav, std::unique_ptr< <a class="el" href="classABLMost.html">ABLMost</a> > &most, const FArrayBox *z_0, const bool &exp_most)</td></tr>
<tr class="separator:a31dc0d2de3f7359bd296ad78bd179f6f"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ab682a12550cbc038e95af12eeaaf49da"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="ERF__ComputeTurbulentViscosity_8cpp.html#ab682a12550cbc038e95af12eeaaf49da">ComputeTurbulentViscosity</a> (const MultiFab &xvel, const MultiFab &yvel, const MultiFab &Tau11, const MultiFab &Tau22, const MultiFab &Tau33, const MultiFab &Tau12, const MultiFab &Tau13, const MultiFab &Tau23, const MultiFab &cons_in, const MultiFab &wdist, MultiFab &eddyViscosity, MultiFab &Hfx1, MultiFab &Hfx2, MultiFab &Hfx3, MultiFab &Diss, const Geometry &geom, const MultiFab &mapfac_u, const MultiFab &mapfac_v, const std::unique_ptr< MultiFab > &z_phys_nd, const <a class="el" href="structSolverChoice.html">SolverChoice</a> &solverChoice, std::unique_ptr< <a class="el" href="classABLMost.html">ABLMost</a> > &most, const amrex::FArrayBox *z_0, const bool &exp_most, const bool &use_terrain_fitted_coords, const bool &use_moisture, int level, const BCRec *bc_ptr, bool vert_only)</td></tr>
<tr class="separator:ab682a12550cbc038e95af12eeaaf49da"><td class="memSeparator" colspan="2"> </td></tr>
</table>
<h2 class="groupheader">Function Documentation</h2>
<a id="ab682a12550cbc038e95af12eeaaf49da"></a>
<h2 class="memtitle"><span class="permalink"><a href="#ab682a12550cbc038e95af12eeaaf49da">◆ </a></span>ComputeTurbulentViscosity()</h2>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname">void ComputeTurbulentViscosity </td>
<td>(</td>
<td class="paramtype">const MultiFab & </td>
<td class="paramname"><em>xvel</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const MultiFab & </td>
<td class="paramname"><em>yvel</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const MultiFab & </td>
<td class="paramname"><em>Tau11</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const MultiFab & </td>
<td class="paramname"><em>Tau22</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const MultiFab & </td>
<td class="paramname"><em>Tau33</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const MultiFab & </td>
<td class="paramname"><em>Tau12</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const MultiFab & </td>
<td class="paramname"><em>Tau13</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const MultiFab & </td>
<td class="paramname"><em>Tau23</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const MultiFab & </td>
<td class="paramname"><em>cons_in</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const MultiFab & </td>
<td class="paramname"><em>wdist</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">MultiFab & </td>
<td class="paramname"><em>eddyViscosity</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">MultiFab & </td>
<td class="paramname"><em>Hfx1</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">MultiFab & </td>
<td class="paramname"><em>Hfx2</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">MultiFab & </td>
<td class="paramname"><em>Hfx3</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">MultiFab & </td>
<td class="paramname"><em>Diss</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const Geometry & </td>
<td class="paramname"><em>geom</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const MultiFab & </td>
<td class="paramname"><em>mapfac_u</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const MultiFab & </td>
<td class="paramname"><em>mapfac_v</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const std::unique_ptr< MultiFab > & </td>
<td class="paramname"><em>z_phys_nd</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const <a class="el" href="structSolverChoice.html">SolverChoice</a> & </td>
<td class="paramname"><em>solverChoice</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">std::unique_ptr< <a class="el" href="classABLMost.html">ABLMost</a> > & </td>
<td class="paramname"><em>most</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const amrex::FArrayBox * </td>
<td class="paramname"><em>z_0</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const bool & </td>
<td class="paramname"><em>exp_most</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const bool & </td>
<td class="paramname"><em>use_terrain_fitted_coords</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const bool & </td>
<td class="paramname"><em>use_moisture</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">int </td>
<td class="paramname"><em>level</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const BCRec * </td>
<td class="paramname"><em>bc_ptr</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">bool </td>
<td class="paramname"><em>vert_only</em> </td>
</tr>
<tr>
<td></td>
<td>)</td>
<td></td><td></td>
</tr>
</table>
</div><div class="memdoc">
<p>Wrapper to compute turbulent viscosity with LES or PBL.</p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramdir">[in]</td><td class="paramname">xvel</td><td>velocity in x-dir </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">yvel</td><td>velocity in y-dir </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">Tau11</td><td>11 strain </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">Tau22</td><td>22 strain </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">Tau33</td><td>33 strain </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">Tau12</td><td>12 strain </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">Tau13</td><td>13 strain </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">Tau23</td><td>23 strain </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">cons_in</td><td>cell center conserved quantities </td></tr>
<tr><td class="paramdir">[out]</td><td class="paramname">eddyViscosity</td><td>turbulent viscosity </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">Hfx1</td><td>heat flux in x-dir </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">Hfx2</td><td>heat flux in y-dir </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">Hfx3</td><td>heat flux in z-dir </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">Diss</td><td>dissipation of turbulent kinetic energy </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">geom</td><td>problem geometry </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">mapfac_u</td><td>map factor at x-face </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">mapfac_v</td><td>map factor at y-face </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">turbChoice</td><td>container with turbulence parameters </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">most</td><td>pointer to Monin-Obukhov class if instantiated </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">vert_only</td><td>flag for vertical components of eddyViscosity </td></tr>
</table>
</dd>
</dl>
<div class="fragment"><div class="line"><a name="l00561"></a><span class="lineno"> 561</span> {</div>
<div class="line"><a name="l00562"></a><span class="lineno"> 562</span>  BL_PROFILE_VAR(<span class="stringliteral">"ComputeTurbulentViscosity()"</span>,<a class="code" href="ERF__ComputeTurbulentViscosity_8cpp.html#ab682a12550cbc038e95af12eeaaf49da">ComputeTurbulentViscosity</a>);</div>
<div class="line"><a name="l00563"></a><span class="lineno"> 563</span>  <span class="comment">//</span></div>
<div class="line"><a name="l00564"></a><span class="lineno"> 564</span>  <span class="comment">// In LES mode, the turbulent viscosity is isotropic, so the LES model sets both horizontal and vertical viscosities</span></div>
<div class="line"><a name="l00565"></a><span class="lineno"> 565</span>  <span class="comment">// In PBL mode, the primary purpose of the PBL model is to control vertical transport, so the PBL model sets the vertical viscosity.</span></div>
<div class="line"><a name="l00566"></a><span class="lineno"> 566</span>  <span class="comment">// Optionally, the PBL model can be run in conjunction with an LES model that sets the horizontal viscosity</span></div>
<div class="line"><a name="l00567"></a><span class="lineno"> 567</span>  <span class="comment">// (this isn’t truly LES, but the model form is the same as Smagorinsky).</span></div>
<div class="line"><a name="l00568"></a><span class="lineno"> 568</span>  <span class="comment">//</span></div>
<div class="line"><a name="l00569"></a><span class="lineno"> 569</span>  <span class="comment">// ComputeTurbulentViscosityLES populates the LES viscosity for both horizontal and vertical components.</span></div>
<div class="line"><a name="l00570"></a><span class="lineno"> 570</span>  <span class="comment">// ComputeTurbulentViscosityPBL computes the PBL viscosity just for the vertical component.</span></div>
<div class="line"><a name="l00571"></a><span class="lineno"> 571</span>  <span class="comment">//</span></div>
<div class="line"><a name="l00572"></a><span class="lineno"> 572</span>  </div>
<div class="line"><a name="l00573"></a><span class="lineno"> 573</span>  <a class="code" href="structTurbChoice.html">TurbChoice</a> turbChoice = solverChoice.<a class="code" href="structSolverChoice.html#aa53b017d79e0067923180a0aa59367b4">turbChoice</a>[level];</div>
<div class="line"><a name="l00574"></a><span class="lineno"> 574</span>  <span class="keyword">const</span> Real const_grav = solverChoice.<a class="code" href="structSolverChoice.html#a47a54f2e44955202b5b437e4b1b4a61b">gravity</a>;</div>
<div class="line"><a name="l00575"></a><span class="lineno"> 575</span>  </div>
<div class="line"><a name="l00576"></a><span class="lineno"> 576</span>  <span class="keywordflow">if</span> (most) {</div>
<div class="line"><a name="l00577"></a><span class="lineno"> 577</span>  <span class="keywordtype">bool</span> l_use_turb = ( turbChoice.<a class="code" href="structTurbChoice.html#abbba68e0d699dd97701d31a0e37d5304">les_type</a> == LESType::Smagorinsky ||</div>
<div class="line"><a name="l00578"></a><span class="lineno"> 578</span>  turbChoice.<a class="code" href="structTurbChoice.html#abbba68e0d699dd97701d31a0e37d5304">les_type</a> == LESType::Deardorff ||</div>
<div class="line"><a name="l00579"></a><span class="lineno"> 579</span>  turbChoice.<a class="code" href="structTurbChoice.html#a52f7f04548a91715b142c88c2f214bc8">rans_type</a> == RANSType::kEqn ||</div>
<div class="line"><a name="l00580"></a><span class="lineno"> 580</span>  turbChoice.<a class="code" href="structTurbChoice.html#a15b9bb58cde72bab3f5714934125f3f9">pbl_type</a> == PBLType::MYNN25 ||</div>
<div class="line"><a name="l00581"></a><span class="lineno"> 581</span>  turbChoice.<a class="code" href="structTurbChoice.html#a15b9bb58cde72bab3f5714934125f3f9">pbl_type</a> == PBLType::MYNNEDMF ||</div>
<div class="line"><a name="l00582"></a><span class="lineno"> 582</span>  turbChoice.<a class="code" href="structTurbChoice.html#a15b9bb58cde72bab3f5714934125f3f9">pbl_type</a> == PBLType::YSU );</div>
<div class="line"><a name="l00583"></a><span class="lineno"> 583</span>  AMREX_ALWAYS_ASSERT_WITH_MESSAGE(l_use_turb,</div>
<div class="line"><a name="l00584"></a><span class="lineno"> 584</span>  <span class="stringliteral">"A turbulence model must be utilized with MOST boundaries to compute the turbulent viscosity"</span>);</div>
<div class="line"><a name="l00585"></a><span class="lineno"> 585</span>  } <span class="keywordflow">else</span> {</div>
<div class="line"><a name="l00586"></a><span class="lineno"> 586</span>  AMREX_ALWAYS_ASSERT(!vert_only);</div>
<div class="line"><a name="l00587"></a><span class="lineno"> 587</span>  }</div>
<div class="line"><a name="l00588"></a><span class="lineno"> 588</span>  </div>
<div class="line"><a name="l00589"></a><span class="lineno"> 589</span>  <span class="keywordtype">bool</span> impose_phys_bcs = <span class="keyword">false</span>;</div>
<div class="line"><a name="l00590"></a><span class="lineno"> 590</span>  </div>
<div class="line"><a name="l00591"></a><span class="lineno"> 591</span>  <span class="keywordflow">if</span> (turbChoice.<a class="code" href="structTurbChoice.html#abbba68e0d699dd97701d31a0e37d5304">les_type</a> != LESType::None) {</div>
<div class="line"><a name="l00592"></a><span class="lineno"> 592</span>  impose_phys_bcs = <span class="keyword">true</span>;</div>
<div class="line"><a name="l00593"></a><span class="lineno"> 593</span>  <a class="code" href="ERF__ComputeTurbulentViscosity_8cpp.html#acd9320f37597f453446a1e7e74804d0d">ComputeTurbulentViscosityLES</a>(Tau11, Tau22, Tau33,</div>
<div class="line"><a name="l00594"></a><span class="lineno"> 594</span>  Tau12, Tau13, Tau23,</div>
<div class="line"><a name="l00595"></a><span class="lineno"> 595</span>  cons_in, eddyViscosity,</div>
<div class="line"><a name="l00596"></a><span class="lineno"> 596</span>  Hfx1, Hfx2, Hfx3, Diss,</div>
<div class="line"><a name="l00597"></a><span class="lineno"> 597</span>  geom, use_terrain_fitted_coords,</div>
<div class="line"><a name="l00598"></a><span class="lineno"> 598</span>  mapfac_u, mapfac_v,</div>
<div class="line"><a name="l00599"></a><span class="lineno"> 599</span>  z_phys_nd, turbChoice, const_grav,</div>
<div class="line"><a name="l00600"></a><span class="lineno"> 600</span>  most, exp_most);</div>
<div class="line"><a name="l00601"></a><span class="lineno"> 601</span>  }</div>
<div class="line"><a name="l00602"></a><span class="lineno"> 602</span>  </div>
<div class="line"><a name="l00603"></a><span class="lineno"> 603</span>  <span class="keywordflow">if</span> (turbChoice.<a class="code" href="structTurbChoice.html#a52f7f04548a91715b142c88c2f214bc8">rans_type</a> != RANSType::None) {</div>
<div class="line"><a name="l00604"></a><span class="lineno"> 604</span>  impose_phys_bcs = <span class="keyword">true</span>;</div>
<div class="line"><a name="l00605"></a><span class="lineno"> 605</span>  <a class="code" href="ERF__ComputeTurbulentViscosity_8cpp.html#a31dc0d2de3f7359bd296ad78bd179f6f">ComputeTurbulentViscosityRANS</a>(Tau11, Tau22, Tau33,</div>
<div class="line"><a name="l00606"></a><span class="lineno"> 606</span>  Tau12, Tau13, Tau23,</div>
<div class="line"><a name="l00607"></a><span class="lineno"> 607</span>  cons_in, wdist,</div>
<div class="line"><a name="l00608"></a><span class="lineno"> 608</span>  eddyViscosity,</div>
<div class="line"><a name="l00609"></a><span class="lineno"> 609</span>  Hfx1, Hfx2, Hfx3, Diss,</div>
<div class="line"><a name="l00610"></a><span class="lineno"> 610</span>  geom, use_terrain_fitted_coords,</div>
<div class="line"><a name="l00611"></a><span class="lineno"> 611</span>  mapfac_u, mapfac_v,</div>
<div class="line"><a name="l00612"></a><span class="lineno"> 612</span>  z_phys_nd, turbChoice, const_grav,</div>
<div class="line"><a name="l00613"></a><span class="lineno"> 613</span>  most, z_0, exp_most);</div>
<div class="line"><a name="l00614"></a><span class="lineno"> 614</span>  }</div>
<div class="line"><a name="l00615"></a><span class="lineno"> 615</span>  </div>
<div class="line"><a name="l00616"></a><span class="lineno"> 616</span>  <span class="keywordflow">if</span> (turbChoice.<a class="code" href="structTurbChoice.html#a15b9bb58cde72bab3f5714934125f3f9">pbl_type</a> == PBLType::MYNN25) {</div>
<div class="line"><a name="l00617"></a><span class="lineno"> 617</span>  <a class="code" href="ERF__ComputeDiffusivityMYNN25_8cpp.html#adcc6389bb07a9fa88881542c75625dd3">ComputeDiffusivityMYNN25</a>(<a class="code" href="namespaceVars.html#a3e5e550795a0b745a4e43177e81f8c57a2a10a6e726515894b07621908abd4c0c">xvel</a>, <a class="code" href="namespaceVars.html#a3e5e550795a0b745a4e43177e81f8c57a81793b83204cfa56d4683bc676fbbfb6">yvel</a>, cons_in, eddyViscosity,</div>
<div class="line"><a name="l00618"></a><span class="lineno"> 618</span>  geom, turbChoice, most,</div>
<div class="line"><a name="l00619"></a><span class="lineno"> 619</span>  use_terrain_fitted_coords, use_moisture,</div>
<div class="line"><a name="l00620"></a><span class="lineno"> 620</span>  level, bc_ptr, vert_only, z_phys_nd,</div>
<div class="line"><a name="l00621"></a><span class="lineno"> 621</span>  solverChoice.<a class="code" href="structSolverChoice.html#a9ac649bbebc73403e291d2af180d4061">RhoQv_comp</a>, solverChoice.<a class="code" href="structSolverChoice.html#a5dc385a342ac6c50e0f9a638a0e31f9f">RhoQc_comp</a>,</div>
<div class="line"><a name="l00622"></a><span class="lineno"> 622</span>  solverChoice.<a class="code" href="structSolverChoice.html#a1d9237205fd632dcde1599511f203131">RhoQr_comp</a>);</div>
<div class="line"><a name="l00623"></a><span class="lineno"> 623</span>  } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (turbChoice.<a class="code" href="structTurbChoice.html#a15b9bb58cde72bab3f5714934125f3f9">pbl_type</a> == PBLType::MYNNEDMF) {</div>
<div class="line"><a name="l00624"></a><span class="lineno"> 624</span>  <a class="code" href="ERF__ComputeDiffusivityMYNNEDMF_8cpp.html#a3cbfe71323c99ee9cdc865f3e2fcf6e4">ComputeDiffusivityMYNNEDMF</a>(<a class="code" href="namespaceVars.html#a3e5e550795a0b745a4e43177e81f8c57a2a10a6e726515894b07621908abd4c0c">xvel</a>, <a class="code" href="namespaceVars.html#a3e5e550795a0b745a4e43177e81f8c57a81793b83204cfa56d4683bc676fbbfb6">yvel</a>, cons_in, eddyViscosity,</div>
<div class="line"><a name="l00625"></a><span class="lineno"> 625</span>  geom, turbChoice, most,</div>
<div class="line"><a name="l00626"></a><span class="lineno"> 626</span>  use_terrain_fitted_coords, use_moisture,</div>
<div class="line"><a name="l00627"></a><span class="lineno"> 627</span>  level, bc_ptr, vert_only, z_phys_nd,</div>
<div class="line"><a name="l00628"></a><span class="lineno"> 628</span>  solverChoice.<a class="code" href="structSolverChoice.html#a9ac649bbebc73403e291d2af180d4061">RhoQv_comp</a>, solverChoice.<a class="code" href="structSolverChoice.html#a5dc385a342ac6c50e0f9a638a0e31f9f">RhoQc_comp</a>,</div>
<div class="line"><a name="l00629"></a><span class="lineno"> 629</span>  solverChoice.<a class="code" href="structSolverChoice.html#a1d9237205fd632dcde1599511f203131">RhoQr_comp</a>);</div>
<div class="line"><a name="l00630"></a><span class="lineno"> 630</span>  } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (turbChoice.<a class="code" href="structTurbChoice.html#a15b9bb58cde72bab3f5714934125f3f9">pbl_type</a> == PBLType::YSU) {</div>
<div class="line"><a name="l00631"></a><span class="lineno"> 631</span>  <a class="code" href="ERF__ComputeDiffusivityYSU_8cpp.html#a00027c8befe278e41369d809ddb6dbcc">ComputeDiffusivityYSU</a>(<a class="code" href="namespaceVars.html#a3e5e550795a0b745a4e43177e81f8c57a2a10a6e726515894b07621908abd4c0c">xvel</a>, <a class="code" href="namespaceVars.html#a3e5e550795a0b745a4e43177e81f8c57a81793b83204cfa56d4683bc676fbbfb6">yvel</a>, cons_in, eddyViscosity,</div>
<div class="line"><a name="l00632"></a><span class="lineno"> 632</span>  geom, turbChoice, most,</div>
<div class="line"><a name="l00633"></a><span class="lineno"> 633</span>  use_terrain_fitted_coords, use_moisture,</div>
<div class="line"><a name="l00634"></a><span class="lineno"> 634</span>  level, bc_ptr, vert_only, z_phys_nd);</div>
<div class="line"><a name="l00635"></a><span class="lineno"> 635</span>  }</div>
<div class="line"><a name="l00636"></a><span class="lineno"> 636</span>  </div>
<div class="line"><a name="l00637"></a><span class="lineno"> 637</span>  <span class="comment">//</span></div>
<div class="line"><a name="l00638"></a><span class="lineno"> 638</span>  <span class="comment">// At all levels we need to fill values outside the physical boundary for the LES coeffs.</span></div>
<div class="line"><a name="l00639"></a><span class="lineno"> 639</span>  <span class="comment">// In addition, for all cases, if at level > 0, we want to fill fine ghost cell values that</span></div>
<div class="line"><a name="l00640"></a><span class="lineno"> 640</span>  <span class="comment">// overlie coarse grid cells (and that are not in another fine valid region) with</span></div>
<div class="line"><a name="l00641"></a><span class="lineno"> 641</span>  <span class="comment">// extrapolated values from the interior, rather than interpolating from the coarser level,</span></div>
<div class="line"><a name="l00642"></a><span class="lineno"> 642</span>  <span class="comment">// since we may be using a different turbulence model there.</span></div>
<div class="line"><a name="l00643"></a><span class="lineno"> 643</span>  <span class="comment">//</span></div>
<div class="line"><a name="l00644"></a><span class="lineno"> 644</span>  <span class="comment">// Note: here "covered" refers to "covered by valid region of another grid at this level"</span></div>
<div class="line"><a name="l00645"></a><span class="lineno"> 645</span>  <span class="comment">// Note: here "physbnd" refers to "cells outside the domain if not periodic"</span></div>
<div class="line"><a name="l00646"></a><span class="lineno"> 646</span>  <span class="comment">// Note: here "interior" refers to "valid cells, i.e. inside 'my' grid"</span></div>
<div class="line"><a name="l00647"></a><span class="lineno"> 647</span>  <span class="comment">//</span></div>
<div class="line"><a name="l00648"></a><span class="lineno"> 648</span>  {</div>
<div class="line"><a name="l00649"></a><span class="lineno"> 649</span>  <span class="keywordtype">int</span> is_covered = 0;</div>
<div class="line"><a name="l00650"></a><span class="lineno"> 650</span>  <span class="keywordtype">int</span> is_notcovered = 1;</div>
<div class="line"><a name="l00651"></a><span class="lineno"> 651</span>  <span class="keywordtype">int</span> is_physbnd = 2;</div>
<div class="line"><a name="l00652"></a><span class="lineno"> 652</span>  <span class="keywordtype">int</span> is_interior = 3;</div>
<div class="line"><a name="l00653"></a><span class="lineno"> 653</span>  iMultiFab cc_mask(eddyViscosity.boxArray(),eddyViscosity.DistributionMap(),1,1);</div>
<div class="line"><a name="l00654"></a><span class="lineno"> 654</span>  cc_mask.BuildMask(geom.Domain(), geom.periodicity(), is_covered, is_notcovered, is_physbnd, is_interior);</div>
<div class="line"><a name="l00655"></a><span class="lineno"> 655</span>  </div>
<div class="line"><a name="l00656"></a><span class="lineno"> 656</span>  Box domain = geom.Domain();</div>
<div class="line"><a name="l00657"></a><span class="lineno"> 657</span>  <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i < AMREX_SPACEDIM; ++i) {</div>
<div class="line"><a name="l00658"></a><span class="lineno"> 658</span>  <span class="keywordflow">if</span> (geom.isPeriodic(i)) {</div>
<div class="line"><a name="l00659"></a><span class="lineno"> 659</span>  domain.grow(i,1);</div>
<div class="line"><a name="l00660"></a><span class="lineno"> 660</span>  }</div>
<div class="line"><a name="l00661"></a><span class="lineno"> 661</span>  }</div>
<div class="line"><a name="l00662"></a><span class="lineno"> 662</span>  </div>
<div class="line"><a name="l00663"></a><span class="lineno"> 663</span>  eddyViscosity.FillBoundary(geom.periodicity());</div>
<div class="line"><a name="l00664"></a><span class="lineno"> 664</span>  </div>
<div class="line"><a name="l00665"></a><span class="lineno"> 665</span>  <span class="keywordtype">int</span> ncomp = eddyViscosity.nComp();</div>
<div class="line"><a name="l00666"></a><span class="lineno"> 666</span>  </div>
<div class="line"><a name="l00667"></a><span class="lineno"> 667</span> <span class="preprocessor">#ifdef _OPENMP</span></div>
<div class="line"><a name="l00668"></a><span class="lineno"> 668</span> <span class="preprocessor">#pragma omp parallel if (Gpu::notInLaunchRegion())</span></div>
<div class="line"><a name="l00669"></a><span class="lineno"> 669</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00670"></a><span class="lineno"> 670</span>  <span class="keywordflow">for</span> (MFIter mfi(eddyViscosity); mfi.isValid(); ++mfi)</div>
<div class="line"><a name="l00671"></a><span class="lineno"> 671</span>  {</div>
<div class="line"><a name="l00672"></a><span class="lineno"> 672</span>  Box vbx = mfi.validbox();</div>
<div class="line"><a name="l00673"></a><span class="lineno"> 673</span>  </div>
<div class="line"><a name="l00674"></a><span class="lineno"> 674</span>  Box planex_lo = mfi.growntilebox(1); planex_lo.setBig(0, vbx.smallEnd(0)-1);</div>
<div class="line"><a name="l00675"></a><span class="lineno"> 675</span>  Box planey_lo = mfi.growntilebox(1); planey_lo.setBig(1, vbx.smallEnd(1)-1);</div>
<div class="line"><a name="l00676"></a><span class="lineno"> 676</span>  Box planez_lo = mfi.growntilebox(1); planez_lo.setBig(2, vbx.smallEnd(2)-1);</div>
<div class="line"><a name="l00677"></a><span class="lineno"> 677</span>  </div>
<div class="line"><a name="l00678"></a><span class="lineno"> 678</span>  Box planex_hi = mfi.growntilebox(1); planex_hi.setSmall(0, vbx.bigEnd(0)+1);</div>
<div class="line"><a name="l00679"></a><span class="lineno"> 679</span>  Box planey_hi = mfi.growntilebox(1); planey_hi.setSmall(1, vbx.bigEnd(1)+1);</div>
<div class="line"><a name="l00680"></a><span class="lineno"> 680</span>  Box planez_hi = mfi.growntilebox(1); planez_hi.setSmall(2, vbx.bigEnd(2)+1);</div>
<div class="line"><a name="l00681"></a><span class="lineno"> 681</span>  </div>
<div class="line"><a name="l00682"></a><span class="lineno"> 682</span>  <span class="keywordtype">int</span> i_lo = vbx.smallEnd(0); <span class="keywordtype">int</span> i_hi = vbx.bigEnd(0);</div>
<div class="line"><a name="l00683"></a><span class="lineno"> 683</span>  <span class="keywordtype">int</span> j_lo = vbx.smallEnd(1); <span class="keywordtype">int</span> j_hi = vbx.bigEnd(1);</div>
<div class="line"><a name="l00684"></a><span class="lineno"> 684</span>  <span class="keywordtype">int</span> k_lo = vbx.smallEnd(2); <span class="keywordtype">int</span> k_hi = vbx.bigEnd(2);</div>
<div class="line"><a name="l00685"></a><span class="lineno"> 685</span>  </div>
<div class="line"><a name="l00686"></a><span class="lineno"> 686</span>  <span class="keyword">const</span> Array4<Real>& mu_turb = eddyViscosity.array(mfi);</div>
<div class="line"><a name="l00687"></a><span class="lineno"> 687</span>  <span class="keyword">const</span> Array4<int>& mask_arr = cc_mask.array(mfi);</div>
<div class="line"><a name="l00688"></a><span class="lineno"> 688</span>  </div>
<div class="line"><a name="l00689"></a><span class="lineno"> 689</span>  <span class="keyword">auto</span> domlo = lbound(domain);</div>
<div class="line"><a name="l00690"></a><span class="lineno"> 690</span>  <span class="keyword">auto</span> domhi = ubound(domain);</div>
<div class="line"><a name="l00691"></a><span class="lineno"> 691</span>  </div>
<div class="line"><a name="l00692"></a><span class="lineno"> 692</span>  ParallelFor(planex_lo, [=] AMREX_GPU_DEVICE (<span class="keywordtype">int</span> i, <span class="keywordtype">int</span> j, <span class="keywordtype">int</span> k) noexcept</div>
<div class="line"><a name="l00693"></a><span class="lineno"> 693</span>  {</div>
<div class="line"><a name="l00694"></a><span class="lineno"> 694</span>  <span class="keywordtype">int</span> lj = amrex::min(amrex::max(j, domlo.y), domhi.y);</div>
<div class="line"><a name="l00695"></a><span class="lineno"> 695</span>  <span class="keywordtype">int</span> lk = amrex::min(amrex::max(k, domlo.z), domhi.z);</div>
<div class="line"><a name="l00696"></a><span class="lineno"> 696</span>  <span class="keywordflow">if</span> ((mask_arr(i,j,k) == is_notcovered) ||</div>
<div class="line"><a name="l00697"></a><span class="lineno"> 697</span>  (mask_arr(i,j,k) == is_physbnd && i < domlo.x && impose_phys_bcs)) {</div>
<div class="line"><a name="l00698"></a><span class="lineno"> 698</span>  <span class="keywordflow">for</span> (<span class="keywordtype">int</span> n = 0; n < ncomp; n++) {</div>
<div class="line"><a name="l00699"></a><span class="lineno"> 699</span>  mu_turb(i,j,k,n) = mu_turb(i_lo,lj,lk,n);</div>
<div class="line"><a name="l00700"></a><span class="lineno"> 700</span>  }</div>
<div class="line"><a name="l00701"></a><span class="lineno"> 701</span>  }</div>
<div class="line"><a name="l00702"></a><span class="lineno"> 702</span>  });</div>
<div class="line"><a name="l00703"></a><span class="lineno"> 703</span>  ParallelFor(planex_hi, [=] AMREX_GPU_DEVICE (<span class="keywordtype">int</span> i, <span class="keywordtype">int</span> j, <span class="keywordtype">int</span> k) noexcept</div>
<div class="line"><a name="l00704"></a><span class="lineno"> 704</span>  {</div>
<div class="line"><a name="l00705"></a><span class="lineno"> 705</span>  <span class="keywordtype">int</span> lj = amrex::min(amrex::max(j, domlo.y), domhi.y);</div>
<div class="line"><a name="l00706"></a><span class="lineno"> 706</span>  <span class="keywordtype">int</span> lk = amrex::min(amrex::max(k, domlo.z), domhi.z);</div>
<div class="line"><a name="l00707"></a><span class="lineno"> 707</span>  <span class="keywordflow">if</span> ((mask_arr(i,j,k) == is_notcovered) ||</div>
<div class="line"><a name="l00708"></a><span class="lineno"> 708</span>  (mask_arr(i,j,k) == is_physbnd && i > domhi.x && impose_phys_bcs)) {</div>
<div class="line"><a name="l00709"></a><span class="lineno"> 709</span>  <span class="keywordflow">for</span> (<span class="keywordtype">int</span> n = 0; n < ncomp; n++) {</div>
<div class="line"><a name="l00710"></a><span class="lineno"> 710</span>  mu_turb(i,j,k,n) = mu_turb(i_hi,lj,lk,n);</div>
<div class="line"><a name="l00711"></a><span class="lineno"> 711</span>  }</div>
<div class="line"><a name="l00712"></a><span class="lineno"> 712</span>  }</div>
<div class="line"><a name="l00713"></a><span class="lineno"> 713</span>  });</div>
<div class="line"><a name="l00714"></a><span class="lineno"> 714</span>  ParallelFor(planey_lo, [=] AMREX_GPU_DEVICE (<span class="keywordtype">int</span> i, <span class="keywordtype">int</span> j, <span class="keywordtype">int</span> k) noexcept</div>
<div class="line"><a name="l00715"></a><span class="lineno"> 715</span>  {</div>
<div class="line"><a name="l00716"></a><span class="lineno"> 716</span>  <span class="keywordtype">int</span> lk = amrex::min(amrex::max(k, domlo.z), domhi.z);</div>
<div class="line"><a name="l00717"></a><span class="lineno"> 717</span>  <span class="keywordflow">if</span> ((mask_arr(i,j,k) == is_notcovered) ||</div>
<div class="line"><a name="l00718"></a><span class="lineno"> 718</span>  (mask_arr(i,j,k) == is_physbnd && j < domlo.y && impose_phys_bcs)) {</div>
<div class="line"><a name="l00719"></a><span class="lineno"> 719</span>  <span class="keywordflow">for</span> (<span class="keywordtype">int</span> n = 0; n < ncomp; n++) {</div>
<div class="line"><a name="l00720"></a><span class="lineno"> 720</span>  mu_turb(i,j,k,n) = mu_turb(i,j_lo,lk,n);</div>
<div class="line"><a name="l00721"></a><span class="lineno"> 721</span>  }</div>
<div class="line"><a name="l00722"></a><span class="lineno"> 722</span>  }</div>
<div class="line"><a name="l00723"></a><span class="lineno"> 723</span>  });</div>
<div class="line"><a name="l00724"></a><span class="lineno"> 724</span>  ParallelFor(planey_hi, [=] AMREX_GPU_DEVICE (<span class="keywordtype">int</span> i, <span class="keywordtype">int</span> j, <span class="keywordtype">int</span> k) noexcept</div>
<div class="line"><a name="l00725"></a><span class="lineno"> 725</span>  {</div>
<div class="line"><a name="l00726"></a><span class="lineno"> 726</span>  <span class="keywordtype">int</span> lk = amrex::min(amrex::max(k, domlo.z), domhi.z);</div>
<div class="line"><a name="l00727"></a><span class="lineno"> 727</span>  <span class="keywordflow">if</span> ((mask_arr(i,j,k) == is_notcovered) ||</div>
<div class="line"><a name="l00728"></a><span class="lineno"> 728</span>  (mask_arr(i,j,k) == is_physbnd && j > domhi.y && impose_phys_bcs)) {</div>
<div class="line"><a name="l00729"></a><span class="lineno"> 729</span>  <span class="keywordflow">for</span> (<span class="keywordtype">int</span> n = 0; n < ncomp; n++) {</div>
<div class="line"><a name="l00730"></a><span class="lineno"> 730</span>  mu_turb(i,j,k,n) = mu_turb(i,j_hi,lk,n);</div>
<div class="line"><a name="l00731"></a><span class="lineno"> 731</span>  }</div>
<div class="line"><a name="l00732"></a><span class="lineno"> 732</span>  }</div>
<div class="line"><a name="l00733"></a><span class="lineno"> 733</span>  });</div>
<div class="line"><a name="l00734"></a><span class="lineno"> 734</span>  ParallelFor(planez_lo, [=] AMREX_GPU_DEVICE (<span class="keywordtype">int</span> i, <span class="keywordtype">int</span> j, <span class="keywordtype">int</span> k) noexcept</div>
<div class="line"><a name="l00735"></a><span class="lineno"> 735</span>  {</div>
<div class="line"><a name="l00736"></a><span class="lineno"> 736</span>  <span class="keywordflow">if</span> ((mask_arr(i,j,k) == is_notcovered) ||</div>
<div class="line"><a name="l00737"></a><span class="lineno"> 737</span>  (mask_arr(i,j,k) == is_physbnd && k < domlo.z && impose_phys_bcs)) {</div>
<div class="line"><a name="l00738"></a><span class="lineno"> 738</span>  if (mask_arr(i,j,k) == is_physbnd) {</div>
<div class="line"><a name="l00739"></a><span class="lineno"> 739</span>  }</div>
<div class="line"><a name="l00740"></a><span class="lineno"> 740</span>  for (<span class="keywordtype">int</span> n = 0; n < ncomp; n++) {</div>
<div class="line"><a name="l00741"></a><span class="lineno"> 741</span>  mu_turb(i,j,k,n) = mu_turb(i,j,k_lo,n);</div>
<div class="line"><a name="l00742"></a><span class="lineno"> 742</span>  }</div>
<div class="line"><a name="l00743"></a><span class="lineno"> 743</span>  }</div>
<div class="line"><a name="l00744"></a><span class="lineno"> 744</span>  });</div>
<div class="line"><a name="l00745"></a><span class="lineno"> 745</span>  ParallelFor(planez_hi, [=] AMREX_GPU_DEVICE (<span class="keywordtype">int</span> i, <span class="keywordtype">int</span> j, <span class="keywordtype">int</span> k) noexcept</div>
<div class="line"><a name="l00746"></a><span class="lineno"> 746</span>  {</div>
<div class="line"><a name="l00747"></a><span class="lineno"> 747</span>  <span class="keywordflow">if</span> ((mask_arr(i,j,k) == is_notcovered) ||</div>
<div class="line"><a name="l00748"></a><span class="lineno"> 748</span>  (mask_arr(i,j,k) == is_physbnd && k > domhi.z && impose_phys_bcs)) {</div>
<div class="line"><a name="l00749"></a><span class="lineno"> 749</span>  for (int n = 0; n < ncomp; n++) {</div>
<div class="line"><a name="l00750"></a><span class="lineno"> 750</span>  mu_turb(i,j,k,n) = mu_turb(i,j,k_hi,n);</div>
<div class="line"><a name="l00751"></a><span class="lineno"> 751</span>  }</div>
<div class="line"><a name="l00752"></a><span class="lineno"> 752</span>  }</div>
<div class="line"><a name="l00753"></a><span class="lineno"> 753</span>  });</div>
<div class="line"><a name="l00754"></a><span class="lineno"> 754</span>  } <span class="comment">// mfi</span></div>
<div class="line"><a name="l00755"></a><span class="lineno"> 755</span>  eddyViscosity.FillBoundary(geom.periodicity());</div>
<div class="line"><a name="l00756"></a><span class="lineno"> 756</span>  }</div>
<div class="line"><a name="l00757"></a><span class="lineno"> 757</span> }</div>
<div class="ttc" id="aERF__ComputeDiffusivityMYNN25_8cpp_html_adcc6389bb07a9fa88881542c75625dd3"><div class="ttname"><a href="ERF__ComputeDiffusivityMYNN25_8cpp.html#adcc6389bb07a9fa88881542c75625dd3">ComputeDiffusivityMYNN25</a></div><div class="ttdeci">void ComputeDiffusivityMYNN25(const MultiFab &xvel, const MultiFab &yvel, const MultiFab &cons_in, MultiFab &eddyViscosity, const Geometry &geom, const TurbChoice &turbChoice, std::unique_ptr< ABLMost > &most, bool use_terrain_fitted_coords, bool use_moisture, int level, const BCRec *bc_ptr, bool, const std::unique_ptr< MultiFab > &z_phys_nd, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp)</div><div class="ttdef"><b>Definition:</b> ERF_ComputeDiffusivityMYNN25.cpp:11</div></div>
<div class="ttc" id="aERF__ComputeDiffusivityMYNNEDMF_8cpp_html_a3cbfe71323c99ee9cdc865f3e2fcf6e4"><div class="ttname"><a href="ERF__ComputeDiffusivityMYNNEDMF_8cpp.html#a3cbfe71323c99ee9cdc865f3e2fcf6e4">ComputeDiffusivityMYNNEDMF</a></div><div class="ttdeci">void ComputeDiffusivityMYNNEDMF(const MultiFab &xvel, const MultiFab &yvel, const MultiFab &cons_in, MultiFab &eddyViscosity, const Geometry &geom, const TurbChoice &turbChoice, std::unique_ptr< ABLMost > &most, bool use_terrain_fitted_coords, bool use_moisture, int level, const BCRec *bc_ptr, bool, const std::unique_ptr< MultiFab > &z_phys_nd, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp)</div><div class="ttdef"><b>Definition:</b> ERF_ComputeDiffusivityMYNNEDMF.cpp:4177</div></div>
<div class="ttc" id="aERF__ComputeDiffusivityYSU_8cpp_html_a00027c8befe278e41369d809ddb6dbcc"><div class="ttname"><a href="ERF__ComputeDiffusivityYSU_8cpp.html#a00027c8befe278e41369d809ddb6dbcc">ComputeDiffusivityYSU</a></div><div class="ttdeci">void ComputeDiffusivityYSU(const MultiFab &xvel, const MultiFab &yvel, const MultiFab &cons_in, MultiFab &eddyViscosity, const Geometry &geom, const TurbChoice &turbChoice, std::unique_ptr< ABLMost > &most, bool use_terrain_fitted_coords, bool, int level, const BCRec *bc_ptr, bool, const std::unique_ptr< MultiFab > &z_phys_nd)</div><div class="ttdef"><b>Definition:</b> ERF_ComputeDiffusivityYSU.cpp:11</div></div>
<div class="ttc" id="aERF__ComputeTurbulentViscosity_8cpp_html_a31dc0d2de3f7359bd296ad78bd179f6f"><div class="ttname"><a href="ERF__ComputeTurbulentViscosity_8cpp.html#a31dc0d2de3f7359bd296ad78bd179f6f">ComputeTurbulentViscosityRANS</a></div><div class="ttdeci">void ComputeTurbulentViscosityRANS(const MultiFab &, const MultiFab &, const MultiFab &, const MultiFab &, const MultiFab &, const MultiFab &, const MultiFab &cons_in, const MultiFab &wdist, MultiFab &eddyViscosity, MultiFab &Hfx1, MultiFab &Hfx2, MultiFab &Hfx3, MultiFab &Diss, const Geometry &geom, bool use_terrain, const MultiFab &, const MultiFab &, const std::unique_ptr< MultiFab > &z_phys_nd, const TurbChoice &turbChoice, const Real const_grav, std::unique_ptr< ABLMost > &most, const FArrayBox *z_0, const bool &exp_most)</div><div class="ttdef"><b>Definition:</b> ERF_ComputeTurbulentViscosity.cpp:310</div></div>
<div class="ttc" id="aERF__ComputeTurbulentViscosity_8cpp_html_ab682a12550cbc038e95af12eeaaf49da"><div class="ttname"><a href="ERF__ComputeTurbulentViscosity_8cpp.html#ab682a12550cbc038e95af12eeaaf49da">ComputeTurbulentViscosity</a></div><div class="ttdeci">void ComputeTurbulentViscosity(const MultiFab &xvel, const MultiFab &yvel, const MultiFab &Tau11, const MultiFab &Tau22, const MultiFab &Tau33, const MultiFab &Tau12, const MultiFab &Tau13, const MultiFab &Tau23, const MultiFab &cons_in, const MultiFab &wdist, MultiFab &eddyViscosity, MultiFab &Hfx1, MultiFab &Hfx2, MultiFab &Hfx3, MultiFab &Diss, const Geometry &geom, const MultiFab &mapfac_u, const MultiFab &mapfac_v, const std::unique_ptr< MultiFab > &z_phys_nd, const SolverChoice &solverChoice, std::unique_ptr< ABLMost > &most, const amrex::FArrayBox *z_0, const bool &exp_most, const bool &use_terrain_fitted_coords, const bool &use_moisture, int level, const BCRec *bc_ptr, bool vert_only)</div><div class="ttdef"><b>Definition:</b> ERF_ComputeTurbulentViscosity.cpp:542</div></div>
<div class="ttc" id="aERF__ComputeTurbulentViscosity_8cpp_html_acd9320f37597f453446a1e7e74804d0d"><div class="ttname"><a href="ERF__ComputeTurbulentViscosity_8cpp.html#acd9320f37597f453446a1e7e74804d0d">ComputeTurbulentViscosityLES</a></div><div class="ttdeci">void ComputeTurbulentViscosityLES(const MultiFab &Tau11, const MultiFab &Tau22, const MultiFab &Tau33, const MultiFab &Tau12, const MultiFab &Tau13, const MultiFab &Tau23, const MultiFab &cons_in, MultiFab &eddyViscosity, MultiFab &Hfx1, MultiFab &Hfx2, MultiFab &Hfx3, MultiFab &Diss, const Geometry &geom, bool use_terrain, const MultiFab &mapfac_u, const MultiFab &mapfac_v, const std::unique_ptr< MultiFab > &z_phys_nd, const TurbChoice &turbChoice, const Real const_grav, std::unique_ptr< ABLMost > &most, const bool &exp_most)</div><div class="ttdef"><b>Definition:</b> ERF_ComputeTurbulentViscosity.cpp:32</div></div>
<div class="ttc" id="anamespaceVars_html_a3e5e550795a0b745a4e43177e81f8c57a2a10a6e726515894b07621908abd4c0c"><div class="ttname"><a href="namespaceVars.html#a3e5e550795a0b745a4e43177e81f8c57a2a10a6e726515894b07621908abd4c0c">Vars::xvel</a></div><div class="ttdeci">@ xvel</div><div class="ttdef"><b>Definition:</b> ERF_IndexDefines.H:141</div></div>
<div class="ttc" id="anamespaceVars_html_a3e5e550795a0b745a4e43177e81f8c57a81793b83204cfa56d4683bc676fbbfb6"><div class="ttname"><a href="namespaceVars.html#a3e5e550795a0b745a4e43177e81f8c57a81793b83204cfa56d4683bc676fbbfb6">Vars::yvel</a></div><div class="ttdeci">@ yvel</div><div class="ttdef"><b>Definition:</b> ERF_IndexDefines.H:142</div></div>
<div class="ttc" id="astructSolverChoice_html_a1d9237205fd632dcde1599511f203131"><div class="ttname"><a href="structSolverChoice.html#a1d9237205fd632dcde1599511f203131">SolverChoice::RhoQr_comp</a></div><div class="ttdeci">int RhoQr_comp</div><div class="ttdef"><b>Definition:</b> ERF_DataStruct.H:783</div></div>
<div class="ttc" id="astructSolverChoice_html_a47a54f2e44955202b5b437e4b1b4a61b"><div class="ttname"><a href="structSolverChoice.html#a47a54f2e44955202b5b437e4b1b4a61b">SolverChoice::gravity</a></div><div class="ttdeci">amrex::Real gravity</div><div class="ttdef"><b>Definition:</b> ERF_DataStruct.H:709</div></div>
<div class="ttc" id="astructSolverChoice_html_a5dc385a342ac6c50e0f9a638a0e31f9f"><div class="ttname"><a href="structSolverChoice.html#a5dc385a342ac6c50e0f9a638a0e31f9f">SolverChoice::RhoQc_comp</a></div><div class="ttdeci">int RhoQc_comp</div><div class="ttdef"><b>Definition:</b> ERF_DataStruct.H:777</div></div>
<div class="ttc" id="astructSolverChoice_html_a9ac649bbebc73403e291d2af180d4061"><div class="ttname"><a href="structSolverChoice.html#a9ac649bbebc73403e291d2af180d4061">SolverChoice::RhoQv_comp</a></div><div class="ttdeci">int RhoQv_comp</div><div class="ttdef"><b>Definition:</b> ERF_DataStruct.H:776</div></div>
<div class="ttc" id="astructSolverChoice_html_aa53b017d79e0067923180a0aa59367b4"><div class="ttname"><a href="structSolverChoice.html#aa53b017d79e0067923180a0aa59367b4">SolverChoice::turbChoice</a></div><div class="ttdeci">amrex::Vector< TurbChoice > turbChoice</div><div class="ttdef"><b>Definition:</b> ERF_DataStruct.H:676</div></div>
<div class="ttc" id="astructTurbChoice_html"><div class="ttname"><a href="structTurbChoice.html">TurbChoice</a></div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:31</div></div>
<div class="ttc" id="astructTurbChoice_html_a15b9bb58cde72bab3f5714934125f3f9"><div class="ttname"><a href="structTurbChoice.html#a15b9bb58cde72bab3f5714934125f3f9">TurbChoice::pbl_type</a></div><div class="ttdeci">PBLType pbl_type</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:240</div></div>
<div class="ttc" id="astructTurbChoice_html_a52f7f04548a91715b142c88c2f214bc8"><div class="ttname"><a href="structTurbChoice.html#a52f7f04548a91715b142c88c2f214bc8">TurbChoice::rans_type</a></div><div class="ttdeci">RANSType rans_type</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:237</div></div>
<div class="ttc" id="astructTurbChoice_html_abbba68e0d699dd97701d31a0e37d5304"><div class="ttname"><a href="structTurbChoice.html#abbba68e0d699dd97701d31a0e37d5304">TurbChoice::les_type</a></div><div class="ttdeci">LESType les_type</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:204</div></div>
</div><!-- fragment -->
<p class="reference">Referenced by <a class="el" href="classERF.html#af836d1bb05ac4c9f535358e14714f13e">ERF::advance_dycore()</a>.</p>
<div class="dynheader">
Here is the call graph for this function:</div>
<div class="dyncontent">
<div class="center"><img src="ERF__ComputeTurbulentViscosity_8cpp_ab682a12550cbc038e95af12eeaaf49da_cgraph.png" border="0" usemap="#aERF__ComputeTurbulentViscosity_8cpp_ab682a12550cbc038e95af12eeaaf49da_cgraph" alt=""/></div>
<map name="aERF__ComputeTurbulentViscosity_8cpp_ab682a12550cbc038e95af12eeaaf49da_cgraph" id="aERF__ComputeTurbulentViscosity_8cpp_ab682a12550cbc038e95af12eeaaf49da_cgraph">
<area shape="rect" title=" " alt="" coords="5,107,205,133"/>
<area shape="rect" href="ERF__ComputeDiffusivityMYNN25_8cpp.html#adcc6389bb07a9fa88881542c75625dd3" title=" " alt="" coords="269,5,473,32"/>
<area shape="rect" href="ERF__ComputeDiffusivityMYNNEDMF_8cpp.html#a3cbfe71323c99ee9cdc865f3e2fcf6e4" title=" " alt="" coords="258,56,485,83"/>
<area shape="rect" href="ERF__ComputeDiffusivityYSU_8cpp.html#a00027c8befe278e41369d809ddb6dbcc" title=" " alt="" coords="284,107,459,133"/>
<area shape="rect" href="ERF__ComputeTurbulentViscosity_8cpp.html#acd9320f37597f453446a1e7e74804d0d" title=" " alt="" coords="260,208,483,235"/>
<area shape="rect" href="ERF__ComputeTurbulentViscosity_8cpp.html#a31dc0d2de3f7359bd296ad78bd179f6f" title=" " alt="" coords="253,157,489,184"/>
<area shape="rect" href="ERF__TerrainMetrics_8H.html#a32eeeb066c70da970aa6a60918515987" title=" " alt="" coords="542,107,762,133"/>
<area shape="rect" href="ERF__TerrainMetrics_8H.html#a41f9b3a5604791daf44935b10a55a565" title=" " alt="" coords="551,56,753,83"/>
<area shape="rect" href="ERF__PBLModels_8H.html#acb354f0d34a376d6c1769d0a3b1521d5" title=" " alt="" coords="537,5,767,32"/>
<area shape="rect" href="ERF__Thetav_8H.html#a560eb559ee1d5b8dceaae23f4f4581d5" title=" " alt="" coords="815,5,881,32"/>
<area shape="rect" href="ERF__EddyViscosity_8H.html#a1d775f0ce64d37053b33d514438ee856" title=" " alt="" coords="583,208,721,235"/>
<area shape="rect" href="ERF__ReadBndryPlanes_8cpp.html#a63d3125f6fd361f61d697799f46da817" title=" " alt="" coords="623,157,681,184"/>
</map>
</div>
<div class="dynheader">
Here is the caller graph for this function:</div>
<div class="dyncontent">
<div class="center"><img src="ERF__ComputeTurbulentViscosity_8cpp_ab682a12550cbc038e95af12eeaaf49da_icgraph.png" border="0" usemap="#aERF__ComputeTurbulentViscosity_8cpp_ab682a12550cbc038e95af12eeaaf49da_icgraph" alt=""/></div>
<map name="aERF__ComputeTurbulentViscosity_8cpp_ab682a12550cbc038e95af12eeaaf49da_icgraph" id="aERF__ComputeTurbulentViscosity_8cpp_ab682a12550cbc038e95af12eeaaf49da_icgraph">
<area shape="rect" title=" " alt="" coords="213,5,413,32"/>
<area shape="rect" href="classERF.html#af836d1bb05ac4c9f535358e14714f13e" title=" " alt="" coords="5,5,165,32"/>
</map>
</div>
</div>
</div>
<a id="acd9320f37597f453446a1e7e74804d0d"></a>
<h2 class="memtitle"><span class="permalink"><a href="#acd9320f37597f453446a1e7e74804d0d">◆ </a></span>ComputeTurbulentViscosityLES()</h2>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname">void ComputeTurbulentViscosityLES </td>
<td>(</td>
<td class="paramtype">const MultiFab & </td>
<td class="paramname"><em>Tau11</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const MultiFab & </td>
<td class="paramname"><em>Tau22</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const MultiFab & </td>
<td class="paramname"><em>Tau33</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const MultiFab & </td>
<td class="paramname"><em>Tau12</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const MultiFab & </td>
<td class="paramname"><em>Tau13</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const MultiFab & </td>
<td class="paramname"><em>Tau23</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const MultiFab & </td>
<td class="paramname"><em>cons_in</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">MultiFab & </td>
<td class="paramname"><em>eddyViscosity</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">MultiFab & </td>
<td class="paramname"><em>Hfx1</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">MultiFab & </td>
<td class="paramname"><em>Hfx2</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">MultiFab & </td>
<td class="paramname"><em>Hfx3</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">MultiFab & </td>
<td class="paramname"><em>Diss</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const Geometry & </td>
<td class="paramname"><em>geom</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">bool </td>
<td class="paramname"><em>use_terrain</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const MultiFab & </td>
<td class="paramname"><em>mapfac_u</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const MultiFab & </td>
<td class="paramname"><em>mapfac_v</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const std::unique_ptr< MultiFab > & </td>
<td class="paramname"><em>z_phys_nd</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const <a class="el" href="structTurbChoice.html">TurbChoice</a> & </td>
<td class="paramname"><em>turbChoice</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const Real </td>
<td class="paramname"><em>const_grav</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">std::unique_ptr< <a class="el" href="classABLMost.html">ABLMost</a> > & </td>
<td class="paramname"><em>most</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const bool & </td>
<td class="paramname"><em>exp_most</em> </td>
</tr>
<tr>
<td></td>
<td>)</td>
<td></td><td></td>
</tr>
</table>
</div><div class="memdoc">
<p>Function for computing the turbulent viscosity with LES.</p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramdir">[in]</td><td class="paramname">Tau11</td><td>11 strain </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">Tau22</td><td>22 strain </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">Tau33</td><td>33 strain </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">Tau12</td><td>12 strain </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">Tau13</td><td>13 strain </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">Tau23</td><td>23 strain </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">cons_in</td><td>cell center conserved quantities </td></tr>
<tr><td class="paramdir">[out]</td><td class="paramname">eddyViscosity</td><td>turbulent viscosity </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">Hfx1</td><td>heat flux in x-dir </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">Hfx2</td><td>heat flux in y-dir </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">Hfx3</td><td>heat flux in z-dir </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">Diss</td><td>dissipation of turbulent kinetic energy </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">geom</td><td>problem geometry </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">mapfac_u</td><td>map factor at x-face </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">mapfac_v</td><td>map factor at y-face </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">turbChoice</td><td>container with turbulence parameters </td></tr>
</table>
</dd>
</dl>
<div class="fragment"><div class="line"><a name="l00041"></a><span class="lineno"> 41</span> {</div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span>  <span class="keyword">const</span> GpuArray<Real, AMREX_SPACEDIM> cellSizeInv = geom.InvCellSizeArray();</div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span>  <span class="keyword">const</span> Box& domain = geom.Domain();</div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span>  <span class="keyword">const</span> <span class="keywordtype">int</span>& klo = domain.smallEnd(2);</div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span>  <span class="keyword">const</span> <span class="keywordtype">bool</span> use_most = (most != <span class="keyword">nullptr</span>);</div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span>  </div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span>  Real inv_Pr_t = turbChoice.<a class="code" href="structTurbChoice.html#aa90aa6c577f632a8c4582a3538d98ad5">Pr_t_inv</a>;</div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span>  Real inv_Sc_t = turbChoice.<a class="code" href="structTurbChoice.html#a2daa4d23f9d89ee777a0d0fbd43196b6">Sc_t_inv</a>;</div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span>  Real inv_sigma_k = 1.0 / turbChoice.<a class="code" href="structTurbChoice.html#a0bb2b38f64a12b0b50552e05dee629e7">sigma_k</a>;</div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span>  </div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span>  <span class="comment">// SMAGORINSKY: Fill Kturb for momentum in horizontal and vertical</span></div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span>  <span class="comment">//***********************************************************************************</span></div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span>  <span class="keywordflow">if</span> (turbChoice.<a class="code" href="structTurbChoice.html#abbba68e0d699dd97701d31a0e37d5304">les_type</a> == LESType::Smagorinsky)</div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span>  {</div>
<div class="line"><a name="l00055"></a><span class="lineno"> 55</span>  Real Cs = turbChoice.<a class="code" href="structTurbChoice.html#aa75682bb872d7917ffb8fddb21532f40">Cs</a>;</div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span>  </div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span> <span class="preprocessor">#ifdef _OPENMP</span></div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span> <span class="preprocessor">#pragma omp parallel if (Gpu::notInLaunchRegion())</span></div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00060"></a><span class="lineno"> 60</span>  <span class="keywordflow">for</span> (MFIter mfi(eddyViscosity,TilingIfNotGPU()); mfi.isValid(); ++mfi)</div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span>  {</div>
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span>  <span class="comment">// NOTE: This gets us the lateral ghost cells for lev>0; which</span></div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span>  <span class="comment">// have been filled from FP Two Levels.</span></div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span>  Box bxcc = mfi.growntilebox(1) & domain;</div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span>  </div>
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span>  <span class="keyword">const</span> Array4<Real>& mu_turb = eddyViscosity.array(mfi);</div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span>  <span class="keyword">const</span> Array4<Real>& hfx_x = Hfx1.array(mfi);</div>
<div class="line"><a name="l00068"></a><span class="lineno"> 68</span>  <span class="keyword">const</span> Array4<Real>& hfx_y = Hfx2.array(mfi);</div>
<div class="line"><a name="l00069"></a><span class="lineno"> 69</span>  <span class="keyword">const</span> Array4<Real>& hfx_z = Hfx3.array(mfi);</div>
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span>  <span class="keyword">const</span> Array4<Real const > &cell_data = cons_in.array(mfi);</div>
<div class="line"><a name="l00071"></a><span class="lineno"> 71</span>  </div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span>  Array4<Real const> tau11 = Tau11.array(mfi);</div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span>  Array4<Real const> tau22 = Tau22.array(mfi);</div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span>  Array4<Real const> tau33 = Tau33.array(mfi);</div>
<div class="line"><a name="l00075"></a><span class="lineno"> 75</span>  Array4<Real const> tau12 = Tau12.array(mfi);</div>
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span>  Array4<Real const> tau13 = Tau13.array(mfi);</div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span>  Array4<Real const> tau23 = Tau23.array(mfi);</div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span>  </div>
<div class="line"><a name="l00079"></a><span class="lineno"> 79</span>  Array4<Real const> mf_u = mapfac_u.array(mfi);</div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span>  Array4<Real const> mf_v = mapfac_v.array(mfi);</div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span>  </div>
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span>  Array4<Real const> z_nd_arr = z_phys_nd->const_array(mfi);</div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span>  </div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span>  ParallelFor(bxcc, [=] AMREX_GPU_DEVICE (<span class="keywordtype">int</span> i, <span class="keywordtype">int</span> j, <span class="keywordtype">int</span> k) noexcept</div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span>  {</div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span>  Real SmnSmn = <a class="code" href="ERF__EddyViscosity_8H.html#a1d775f0ce64d37053b33d514438ee856">ComputeSmnSmn</a>(i,j,k,tau11,tau22,tau33,tau12,tau13,tau23,klo,use_most,exp_most);</div>
<div class="line"><a name="l00087"></a><span class="lineno"> 87</span>  Real dxInv = cellSizeInv[0];</div>
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span>  Real dyInv = cellSizeInv[1];</div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span>  Real dzInv = cellSizeInv[2];</div>
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span>  <span class="keywordflow">if</span> (use_terrain) {</div>
<div class="line"><a name="l00091"></a><span class="lineno"> 91</span>  <span class="comment">// the terrain grid is only deformed in z for now</span></div>
<div class="line"><a name="l00092"></a><span class="lineno"> 92</span>  dzInv /= <a class="code" href="ERF__TerrainMetrics_8H.html#a32eeeb066c70da970aa6a60918515987">Compute_h_zeta_AtCellCenter</a>(i,j,k, cellSizeInv, z_nd_arr);</div>
<div class="line"><a name="l00093"></a><span class="lineno"> 93</span>  }</div>
<div class="line"><a name="l00094"></a><span class="lineno"> 94</span>  Real cellVolMsf = 1.0 / (dxInv * mf_u(i,j,0) * dyInv * mf_v(i,j,0) * dzInv);</div>
<div class="line"><a name="l00095"></a><span class="lineno"> 95</span>  Real DeltaMsf = std::pow(cellVolMsf,1.0/3.0);</div>
<div class="line"><a name="l00096"></a><span class="lineno"> 96</span>  Real CsDeltaSqrMsf = Cs*Cs*DeltaMsf*DeltaMsf;</div>
<div class="line"><a name="l00097"></a><span class="lineno"> 97</span>  </div>
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span>  mu_turb(i, j, k, <a class="code" href="namespaceEddyDiff.html#a45268689de46663ab6458f48c6878fc5a2e96e6d5e84e7d7b9857e73159dfbe2b">EddyDiff::Mom_h</a>) = CsDeltaSqrMsf * cell_data(i, j, k, <a class="code" href="ERF__IndexDefines_8H.html#a27dcc910aeb002a0fd44727954dc0e49">Rho_comp</a>) * std::sqrt(2.0*SmnSmn);</div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span>  mu_turb(i, j, k, <a class="code" href="namespaceEddyDiff.html#a45268689de46663ab6458f48c6878fc5a61ed124b350a1b26da1bd26aebfa5f82">EddyDiff::Mom_v</a>) = mu_turb(i, j, k, <a class="code" href="namespaceEddyDiff.html#a45268689de46663ab6458f48c6878fc5a2e96e6d5e84e7d7b9857e73159dfbe2b">EddyDiff::Mom_h</a>);</div>
<div class="line"><a name="l00100"></a><span class="lineno"> 100</span>  </div>
<div class="line"><a name="l00101"></a><span class="lineno"> 101</span>  <span class="comment">// Calculate SFS quantities</span></div>
<div class="line"><a name="l00102"></a><span class="lineno"> 102</span>  Real dtheta_dz;</div>
<div class="line"><a name="l00103"></a><span class="lineno"> 103</span>  <span class="keywordflow">if</span> (use_most && k==klo) {</div>
<div class="line"><a name="l00104"></a><span class="lineno"> 104</span>  <span class="keywordflow">if</span> (exp_most) {</div>
<div class="line"><a name="l00105"></a><span class="lineno"> 105</span>  dtheta_dz = ( cell_data(i,j,k+1,<a class="code" href="ERF__IndexDefines_8H.html#a28f96fd04e1ff08fa7a8f53ccde0f877">RhoTheta_comp</a>)/cell_data(i,j,k+1,<a class="code" href="ERF__IndexDefines_8H.html#a27dcc910aeb002a0fd44727954dc0e49">Rho_comp</a>)</div>
<div class="line"><a name="l00106"></a><span class="lineno"> 106</span>  - cell_data(i,j,k ,<a class="code" href="ERF__IndexDefines_8H.html#a28f96fd04e1ff08fa7a8f53ccde0f877">RhoTheta_comp</a>)/cell_data(i,j,k ,<a class="code" href="ERF__IndexDefines_8H.html#a27dcc910aeb002a0fd44727954dc0e49">Rho_comp</a>) )*dzInv;</div>
<div class="line"><a name="l00107"></a><span class="lineno"> 107</span>  } <span class="keywordflow">else</span> {</div>
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span>  dtheta_dz = 0.5 * (-3 * cell_data(i,j,k ,<a class="code" href="ERF__IndexDefines_8H.html#a28f96fd04e1ff08fa7a8f53ccde0f877">RhoTheta_comp</a>)</div>
<div class="line"><a name="l00109"></a><span class="lineno"> 109</span>  / cell_data(i,j,k ,<a class="code" href="ERF__IndexDefines_8H.html#a27dcc910aeb002a0fd44727954dc0e49">Rho_comp</a>)</div>
<div class="line"><a name="l00110"></a><span class="lineno"> 110</span>  + 4 * cell_data(i,j,k+1,<a class="code" href="ERF__IndexDefines_8H.html#a28f96fd04e1ff08fa7a8f53ccde0f877">RhoTheta_comp</a>)</div>
<div class="line"><a name="l00111"></a><span class="lineno"> 111</span>  / cell_data(i,j,k+1,<a class="code" href="ERF__IndexDefines_8H.html#a27dcc910aeb002a0fd44727954dc0e49">Rho_comp</a>)</div>
<div class="line"><a name="l00112"></a><span class="lineno"> 112</span>  - cell_data(i,j,k+2,<a class="code" href="ERF__IndexDefines_8H.html#a28f96fd04e1ff08fa7a8f53ccde0f877">RhoTheta_comp</a>)</div>
<div class="line"><a name="l00113"></a><span class="lineno"> 113</span>  / cell_data(i,j,k+2,<a class="code" href="ERF__IndexDefines_8H.html#a27dcc910aeb002a0fd44727954dc0e49">Rho_comp</a>) ) * dzInv;</div>
<div class="line"><a name="l00114"></a><span class="lineno"> 114</span>  }</div>
<div class="line"><a name="l00115"></a><span class="lineno"> 115</span>  } <span class="keywordflow">else</span> {</div>
<div class="line"><a name="l00116"></a><span class="lineno"> 116</span>  dtheta_dz = 0.5 * ( cell_data(i,j,k+1,<a class="code" href="ERF__IndexDefines_8H.html#a28f96fd04e1ff08fa7a8f53ccde0f877">RhoTheta_comp</a>)/cell_data(i,j,k+1,<a class="code" href="ERF__IndexDefines_8H.html#a27dcc910aeb002a0fd44727954dc0e49">Rho_comp</a>)</div>
<div class="line"><a name="l00117"></a><span class="lineno"> 117</span>  - cell_data(i,j,k-1,<a class="code" href="ERF__IndexDefines_8H.html#a28f96fd04e1ff08fa7a8f53ccde0f877">RhoTheta_comp</a>)/cell_data(i,j,k-1,<a class="code" href="ERF__IndexDefines_8H.html#a27dcc910aeb002a0fd44727954dc0e49">Rho_comp</a>) )*dzInv;</div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span>  }</div>
<div class="line"><a name="l00119"></a><span class="lineno"> 119</span>  <span class="comment">// - heat flux</span></div>
<div class="line"><a name="l00120"></a><span class="lineno"> 120</span>  <span class="comment">// (Note: If using ERF_EXPLICIT_MOST_STRESS, the value at k=0 will</span></div>
<div class="line"><a name="l00121"></a><span class="lineno"> 121</span>  <span class="comment">// be overwritten when BCs are applied)</span></div>
<div class="line"><a name="l00122"></a><span class="lineno"> 122</span>  hfx_x(i,j,k) = 0.0;</div>
<div class="line"><a name="l00123"></a><span class="lineno"> 123</span>  hfx_y(i,j,k) = 0.0;</div>
<div class="line"><a name="l00124"></a><span class="lineno"> 124</span>  hfx_z(i,j,k) = -inv_Pr_t*mu_turb(i,j,k,<a class="code" href="namespaceEddyDiff.html#a45268689de46663ab6458f48c6878fc5a61ed124b350a1b26da1bd26aebfa5f82">EddyDiff::Mom_v</a>) * dtheta_dz; <span class="comment">// (rho*w)' theta' [kg m^-2 s^-1 K]</span></div>
<div class="line"><a name="l00125"></a><span class="lineno"> 125</span>  });</div>
<div class="line"><a name="l00126"></a><span class="lineno"> 126</span>  }</div>
<div class="line"><a name="l00127"></a><span class="lineno"> 127</span>  }</div>
<div class="line"><a name="l00128"></a><span class="lineno"> 128</span>  <span class="comment">// DEARDORFF: Fill Kturb for momentum in horizontal and vertical</span></div>
<div class="line"><a name="l00129"></a><span class="lineno"> 129</span>  <span class="comment">//***********************************************************************************</span></div>
<div class="line"><a name="l00130"></a><span class="lineno"> 130</span>  <span class="keywordflow">else</span> <span class="keywordflow">if</span> (turbChoice.<a class="code" href="structTurbChoice.html#abbba68e0d699dd97701d31a0e37d5304">les_type</a> == LESType::Deardorff)</div>
<div class="line"><a name="l00131"></a><span class="lineno"> 131</span>  {</div>
<div class="line"><a name="l00132"></a><span class="lineno"> 132</span>  <span class="keyword">const</span> Real l_C_k = turbChoice.<a class="code" href="structTurbChoice.html#a61ff7dc6ee4001ae8f2978efd5ff57e4">Ck</a>;</div>
<div class="line"><a name="l00133"></a><span class="lineno"> 133</span>  <span class="keyword">const</span> Real l_C_e = turbChoice.<a class="code" href="structTurbChoice.html#ab6d0ae39e92dcbe7362abf53364c1a8e">Ce</a>;</div>
<div class="line"><a name="l00134"></a><span class="lineno"> 134</span>  <span class="keyword">const</span> Real l_C_e_wall = turbChoice.<a class="code" href="structTurbChoice.html#ab2d1ecb36171ca19ea851e8e682a1478">Ce_wall</a>;</div>
<div class="line"><a name="l00135"></a><span class="lineno"> 135</span>  <span class="keyword">const</span> Real Ce_lcoeff = amrex::max(0.0, l_C_e - 1.9*l_C_k);</div>
<div class="line"><a name="l00136"></a><span class="lineno"> 136</span>  <span class="keyword">const</span> Real l_abs_g = const_grav;</div>
<div class="line"><a name="l00137"></a><span class="lineno"> 137</span>  <span class="keyword">const</span> Real l_inv_theta0 = 1.0 / turbChoice.<a class="code" href="structTurbChoice.html#aeb3c184b540858407426a606327fba3a">theta_ref</a>;</div>
<div class="line"><a name="l00138"></a><span class="lineno"> 138</span>  </div>
<div class="line"><a name="l00139"></a><span class="lineno"> 139</span> <span class="preprocessor">#ifdef _OPENMP</span></div>
<div class="line"><a name="l00140"></a><span class="lineno"> 140</span> <span class="preprocessor">#pragma omp parallel if (Gpu::notInLaunchRegion())</span></div>
<div class="line"><a name="l00141"></a><span class="lineno"> 141</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00142"></a><span class="lineno"> 142</span>  <span class="keywordflow">for</span> ( MFIter mfi(eddyViscosity,TilingIfNotGPU()); mfi.isValid(); ++mfi)</div>
<div class="line"><a name="l00143"></a><span class="lineno"> 143</span>  {</div>
<div class="line"><a name="l00144"></a><span class="lineno"> 144</span>  Box bxcc = mfi.tilebox();</div>
<div class="line"><a name="l00145"></a><span class="lineno"> 145</span>  </div>
<div class="line"><a name="l00146"></a><span class="lineno"> 146</span>  <span class="keyword">const</span> Array4<Real>& mu_turb = eddyViscosity.array(mfi);</div>
<div class="line"><a name="l00147"></a><span class="lineno"> 147</span>  <span class="keyword">const</span> Array4<Real>& hfx_x = Hfx1.array(mfi);</div>
<div class="line"><a name="l00148"></a><span class="lineno"> 148</span>  <span class="keyword">const</span> Array4<Real>& hfx_y = Hfx2.array(mfi);</div>
<div class="line"><a name="l00149"></a><span class="lineno"> 149</span>  <span class="keyword">const</span> Array4<Real>& hfx_z = Hfx3.array(mfi);</div>
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span>  <span class="keyword">const</span> Array4<Real>& diss = Diss.array(mfi);</div>
<div class="line"><a name="l00151"></a><span class="lineno"> 151</span>  </div>
<div class="line"><a name="l00152"></a><span class="lineno"> 152</span>  <span class="keyword">const</span> Array4<Real const > &cell_data = cons_in.array(mfi);</div>
<div class="line"><a name="l00153"></a><span class="lineno"> 153</span>  </div>
<div class="line"><a name="l00154"></a><span class="lineno"> 154</span>  Array4<Real const> mf_u = mapfac_u.array(mfi);</div>
<div class="line"><a name="l00155"></a><span class="lineno"> 155</span>  Array4<Real const> mf_v = mapfac_v.array(mfi);</div>
<div class="line"><a name="l00156"></a><span class="lineno"> 156</span>  </div>
<div class="line"><a name="l00157"></a><span class="lineno"> 157</span>  Array4<Real const> z_nd_arr = z_phys_nd->const_array(mfi);</div>
<div class="line"><a name="l00158"></a><span class="lineno"> 158</span>  </div>
<div class="line"><a name="l00159"></a><span class="lineno"> 159</span>  ParallelFor(bxcc, [=] AMREX_GPU_DEVICE (<span class="keywordtype">int</span> i, <span class="keywordtype">int</span> j, <span class="keywordtype">int</span> k) noexcept</div>
<div class="line"><a name="l00160"></a><span class="lineno"> 160</span>  {</div>
<div class="line"><a name="l00161"></a><span class="lineno"> 161</span>  Real dxInv = cellSizeInv[0];</div>
<div class="line"><a name="l00162"></a><span class="lineno"> 162</span>  Real dyInv = cellSizeInv[1];</div>
<div class="line"><a name="l00163"></a><span class="lineno"> 163</span>  Real dzInv = cellSizeInv[2];</div>
<div class="line"><a name="l00164"></a><span class="lineno"> 164</span>  <span class="keywordflow">if</span> (use_terrain) {</div>
<div class="line"><a name="l00165"></a><span class="lineno"> 165</span>  <span class="comment">// the terrain grid is only deformed in z for now</span></div>
<div class="line"><a name="l00166"></a><span class="lineno"> 166</span>  dzInv /= <a class="code" href="ERF__TerrainMetrics_8H.html#a32eeeb066c70da970aa6a60918515987">Compute_h_zeta_AtCellCenter</a>(i,j,k, cellSizeInv, z_nd_arr);</div>
<div class="line"><a name="l00167"></a><span class="lineno"> 167</span>  }</div>
<div class="line"><a name="l00168"></a><span class="lineno"> 168</span>  Real cellVolMsf = 1.0 / (dxInv * mf_u(i,j,0) * dyInv * mf_v(i,j,0) * dzInv);</div>
<div class="line"><a name="l00169"></a><span class="lineno"> 169</span>  Real DeltaMsf = std::pow(cellVolMsf,1.0/3.0);</div>
<div class="line"><a name="l00170"></a><span class="lineno"> 170</span>  </div>
<div class="line"><a name="l00171"></a><span class="lineno"> 171</span>  <span class="comment">// Calculate stratification-dependent mixing length (Deardorff 1980)</span></div>
<div class="line"><a name="l00172"></a><span class="lineno"> 172</span>  Real eps = std::numeric_limits<Real>::epsilon();</div>
<div class="line"><a name="l00173"></a><span class="lineno"> 173</span>  Real dtheta_dz;</div>
<div class="line"><a name="l00174"></a><span class="lineno"> 174</span>  <span class="keywordflow">if</span> (use_most && k==klo) {</div>
<div class="line"><a name="l00175"></a><span class="lineno"> 175</span>  <span class="keywordflow">if</span> (exp_most) {</div>
<div class="line"><a name="l00176"></a><span class="lineno"> 176</span>  dtheta_dz = ( cell_data(i,j,k+1,<a class="code" href="ERF__IndexDefines_8H.html#a28f96fd04e1ff08fa7a8f53ccde0f877">RhoTheta_comp</a>)/cell_data(i,j,k+1,<a class="code" href="ERF__IndexDefines_8H.html#a27dcc910aeb002a0fd44727954dc0e49">Rho_comp</a>)</div>
<div class="line"><a name="l00177"></a><span class="lineno"> 177</span>  - cell_data(i,j,k ,<a class="code" href="ERF__IndexDefines_8H.html#a28f96fd04e1ff08fa7a8f53ccde0f877">RhoTheta_comp</a>)/cell_data(i,j,k ,<a class="code" href="ERF__IndexDefines_8H.html#a27dcc910aeb002a0fd44727954dc0e49">Rho_comp</a>) )*dzInv;</div>
<div class="line"><a name="l00178"></a><span class="lineno"> 178</span>  } <span class="keywordflow">else</span> {</div>
<div class="line"><a name="l00179"></a><span class="lineno"> 179</span>  dtheta_dz = 0.5 * (-3 * cell_data(i,j,k ,<a class="code" href="ERF__IndexDefines_8H.html#a28f96fd04e1ff08fa7a8f53ccde0f877">RhoTheta_comp</a>)</div>
<div class="line"><a name="l00180"></a><span class="lineno"> 180</span>  / cell_data(i,j,k ,<a class="code" href="ERF__IndexDefines_8H.html#a27dcc910aeb002a0fd44727954dc0e49">Rho_comp</a>)</div>
<div class="line"><a name="l00181"></a><span class="lineno"> 181</span>  + 4 * cell_data(i,j,k+1,<a class="code" href="ERF__IndexDefines_8H.html#a28f96fd04e1ff08fa7a8f53ccde0f877">RhoTheta_comp</a>)</div>
<div class="line"><a name="l00182"></a><span class="lineno"> 182</span>  / cell_data(i,j,k+1,<a class="code" href="ERF__IndexDefines_8H.html#a27dcc910aeb002a0fd44727954dc0e49">Rho_comp</a>)</div>
<div class="line"><a name="l00183"></a><span class="lineno"> 183</span>  - cell_data(i,j,k+2,<a class="code" href="ERF__IndexDefines_8H.html#a28f96fd04e1ff08fa7a8f53ccde0f877">RhoTheta_comp</a>)</div>
<div class="line"><a name="l00184"></a><span class="lineno"> 184</span>  / cell_data(i,j,k+2,<a class="code" href="ERF__IndexDefines_8H.html#a27dcc910aeb002a0fd44727954dc0e49">Rho_comp</a>) ) * dzInv;</div>
<div class="line"><a name="l00185"></a><span class="lineno"> 185</span>  }</div>
<div class="line"><a name="l00186"></a><span class="lineno"> 186</span>  } <span class="keywordflow">else</span> {</div>
<div class="line"><a name="l00187"></a><span class="lineno"> 187</span>  dtheta_dz = 0.5 * ( cell_data(i,j,k+1,<a class="code" href="ERF__IndexDefines_8H.html#a28f96fd04e1ff08fa7a8f53ccde0f877">RhoTheta_comp</a>)/cell_data(i,j,k+1,<a class="code" href="ERF__IndexDefines_8H.html#a27dcc910aeb002a0fd44727954dc0e49">Rho_comp</a>)</div>
<div class="line"><a name="l00188"></a><span class="lineno"> 188</span>  - cell_data(i,j,k-1,<a class="code" href="ERF__IndexDefines_8H.html#a28f96fd04e1ff08fa7a8f53ccde0f877">RhoTheta_comp</a>)/cell_data(i,j,k-1,<a class="code" href="ERF__IndexDefines_8H.html#a27dcc910aeb002a0fd44727954dc0e49">Rho_comp</a>) )*dzInv;</div>
<div class="line"><a name="l00189"></a><span class="lineno"> 189</span>  }</div>
<div class="line"><a name="l00190"></a><span class="lineno"> 190</span>  Real E = amrex::max(cell_data(i,j,k,<a class="code" href="ERF__IndexDefines_8H.html#ae15721db2cb4c2ab4732afe226bbba64">RhoKE_comp</a>)/cell_data(i,j,k,<a class="code" href="ERF__IndexDefines_8H.html#a27dcc910aeb002a0fd44727954dc0e49">Rho_comp</a>),Real(0.0));</div>
<div class="line"><a name="l00191"></a><span class="lineno"> 191</span>  Real stratification = l_abs_g * dtheta_dz * l_inv_theta0;</div>
<div class="line"><a name="l00192"></a><span class="lineno"> 192</span>  Real length;</div>
<div class="line"><a name="l00193"></a><span class="lineno"> 193</span>  <span class="keywordflow">if</span> (stratification <= eps) {</div>
<div class="line"><a name="l00194"></a><span class="lineno"> 194</span>  length = DeltaMsf;</div>
<div class="line"><a name="l00195"></a><span class="lineno"> 195</span>  } <span class="keywordflow">else</span> {</div>
<div class="line"><a name="l00196"></a><span class="lineno"> 196</span>  length = 0.76 * std::sqrt(E / amrex::max(stratification,eps));</div>
<div class="line"><a name="l00197"></a><span class="lineno"> 197</span>  <span class="comment">// mixing length should be _reduced_ for stable stratification</span></div>
<div class="line"><a name="l00198"></a><span class="lineno"> 198</span>  length = amrex::min(length, DeltaMsf);</div>
<div class="line"><a name="l00199"></a><span class="lineno"> 199</span>  <span class="comment">// following WRF, make sure the mixing length isn't too small</span></div>
<div class="line"><a name="l00200"></a><span class="lineno"> 200</span>  length = amrex::max(length, 0.001 * DeltaMsf);</div>
<div class="line"><a name="l00201"></a><span class="lineno"> 201</span>  }</div>
<div class="line"><a name="l00202"></a><span class="lineno"> 202</span>  </div>
<div class="line"><a name="l00203"></a><span class="lineno"> 203</span>  <span class="comment">// Calculate eddy diffusivities</span></div>
<div class="line"><a name="l00204"></a><span class="lineno"> 204</span>  <span class="comment">// K = rho * C_k * l * KE^(1/2)</span></div>
<div class="line"><a name="l00205"></a><span class="lineno"> 205</span>  mu_turb(i,j,k,<a class="code" href="namespaceEddyDiff.html#a45268689de46663ab6458f48c6878fc5a2e96e6d5e84e7d7b9857e73159dfbe2b">EddyDiff::Mom_h</a>) = cell_data(i,j,k,<a class="code" href="ERF__IndexDefines_8H.html#a27dcc910aeb002a0fd44727954dc0e49">Rho_comp</a>) * l_C_k * length * std::sqrt(E);</div>
<div class="line"><a name="l00206"></a><span class="lineno"> 206</span>  mu_turb(i,j,k,<a class="code" href="namespaceEddyDiff.html#a45268689de46663ab6458f48c6878fc5a61ed124b350a1b26da1bd26aebfa5f82">EddyDiff::Mom_v</a>) = mu_turb(i,j,k,<a class="code" href="namespaceEddyDiff.html#a45268689de46663ab6458f48c6878fc5a2e96e6d5e84e7d7b9857e73159dfbe2b">EddyDiff::Mom_h</a>);</div>
<div class="line"><a name="l00207"></a><span class="lineno"> 207</span>  <span class="comment">// KH = (1 + 2*l/delta) * mu_turb</span></div>
<div class="line"><a name="l00208"></a><span class="lineno"> 208</span>  mu_turb(i,j,k,<a class="code" href="namespaceEddyDiff.html#a45268689de46663ab6458f48c6878fc5ad0cfc6c50b43867895cbc2c02eb2b99a">EddyDiff::Theta_h</a>) = (1.+2.*length/DeltaMsf) * mu_turb(i,j,k,<a class="code" href="namespaceEddyDiff.html#a45268689de46663ab6458f48c6878fc5a2e96e6d5e84e7d7b9857e73159dfbe2b">EddyDiff::Mom_h</a>);</div>
<div class="line"><a name="l00209"></a><span class="lineno"> 209</span>  mu_turb(i,j,k,<a class="code" href="namespaceEddyDiff.html#a45268689de46663ab6458f48c6878fc5a0af64d676c5c6f4312eb892f9a7a46cd">EddyDiff::Theta_v</a>) = mu_turb(i,j,k,<a class="code" href="namespaceEddyDiff.html#a45268689de46663ab6458f48c6878fc5ad0cfc6c50b43867895cbc2c02eb2b99a">EddyDiff::Theta_h</a>);</div>
<div class="line"><a name="l00210"></a><span class="lineno"> 210</span>  <span class="comment">// Store lengthscale for TKE source terms</span></div>
<div class="line"><a name="l00211"></a><span class="lineno"> 211</span>  mu_turb(i,j,k,<a class="code" href="namespaceEddyDiff.html#a45268689de46663ab6458f48c6878fc5a1fd996857fe3699ac7f9454e88d6ae76">EddyDiff::Turb_lengthscale</a>) = length;</div>
<div class="line"><a name="l00212"></a><span class="lineno"> 212</span>  </div>
<div class="line"><a name="l00213"></a><span class="lineno"> 213</span>  <span class="comment">// Calculate SFS quantities</span></div>
<div class="line"><a name="l00214"></a><span class="lineno"> 214</span>  <span class="comment">// - dissipation</span></div>
<div class="line"><a name="l00215"></a><span class="lineno"> 215</span>  Real Ce;</div>
<div class="line"><a name="l00216"></a><span class="lineno"> 216</span>  <span class="keywordflow">if</span> ((l_C_e_wall > 0) && (k==0)) {</div>
<div class="line"><a name="l00217"></a><span class="lineno"> 217</span>  Ce = l_C_e_wall;</div>
<div class="line"><a name="l00218"></a><span class="lineno"> 218</span>  } <span class="keywordflow">else</span> {</div>
<div class="line"><a name="l00219"></a><span class="lineno"> 219</span>  Ce = 1.9*l_C_k + Ce_lcoeff*length / DeltaMsf;</div>
<div class="line"><a name="l00220"></a><span class="lineno"> 220</span>  }</div>
<div class="line"><a name="l00221"></a><span class="lineno"> 221</span>  diss(i,j,k) = cell_data(i,j,k,<a class="code" href="ERF__IndexDefines_8H.html#a27dcc910aeb002a0fd44727954dc0e49">Rho_comp</a>) * Ce * std::pow(E,1.5) / length;</div>
<div class="line"><a name="l00222"></a><span class="lineno"> 222</span>  </div>
<div class="line"><a name="l00223"></a><span class="lineno"> 223</span>  <span class="comment">// - heat flux</span></div>
<div class="line"><a name="l00224"></a><span class="lineno"> 224</span>  <span class="comment">// (Note: If using ERF_EXPLICIT_MOST_STRESS, the value at k=0 will</span></div>
<div class="line"><a name="l00225"></a><span class="lineno"> 225</span>  <span class="comment">// be overwritten when BCs are applied)</span></div>
<div class="line"><a name="l00226"></a><span class="lineno"> 226</span>  hfx_x(i,j,k) = 0.0;</div>
<div class="line"><a name="l00227"></a><span class="lineno"> 227</span>  hfx_y(i,j,k) = 0.0;</div>
<div class="line"><a name="l00228"></a><span class="lineno"> 228</span>  hfx_z(i,j,k) = -mu_turb(i,j,k,<a class="code" href="namespaceEddyDiff.html#a45268689de46663ab6458f48c6878fc5a0af64d676c5c6f4312eb892f9a7a46cd">EddyDiff::Theta_v</a>) * dtheta_dz; <span class="comment">// (rho*w)' theta' [kg m^-2 s^-1 K]</span></div>
<div class="line"><a name="l00229"></a><span class="lineno"> 229</span>  });</div>
<div class="line"><a name="l00230"></a><span class="lineno"> 230</span>  }</div>
<div class="line"><a name="l00231"></a><span class="lineno"> 231</span>  }</div>
<div class="line"><a name="l00232"></a><span class="lineno"> 232</span>  </div>
<div class="line"><a name="l00233"></a><span class="lineno"> 233</span>  <span class="comment">// Extrapolate Kturb in x/y, fill remaining elements (relevant to lev==0)</span></div>
<div class="line"><a name="l00234"></a><span class="lineno"> 234</span>  <span class="comment">//***********************************************************************************</span></div>
<div class="line"><a name="l00235"></a><span class="lineno"> 235</span>  <span class="keywordtype">int</span> ngc(1);</div>
<div class="line"><a name="l00236"></a><span class="lineno"> 236</span>  <span class="comment">// EddyDiff mapping : Theta_h KE_h Scalar_h Q_h</span></div>
<div class="line"><a name="l00237"></a><span class="lineno"> 237</span>  Vector<Real> Factors = {inv_Pr_t, inv_sigma_k, inv_Sc_t, inv_Sc_t}; <span class="comment">// alpha = mu/Pr</span></div>
<div class="line"><a name="l00238"></a><span class="lineno"> 238</span>  Gpu::AsyncVector<Real> d_Factors; d_Factors.resize(Factors.size());</div>
<div class="line"><a name="l00239"></a><span class="lineno"> 239</span>  Gpu::copy(Gpu::hostToDevice, Factors.begin(), Factors.end(), d_Factors.begin());</div>
<div class="line"><a name="l00240"></a><span class="lineno"> 240</span>  Real* fac_ptr = d_Factors.data();</div>
<div class="line"><a name="l00241"></a><span class="lineno"> 241</span>  </div>
<div class="line"><a name="l00242"></a><span class="lineno"> 242</span>  <span class="keyword">const</span> <span class="keywordtype">bool</span> use_KE = ( turbChoice.<a class="code" href="structTurbChoice.html#abbba68e0d699dd97701d31a0e37d5304">les_type</a> == LESType::Deardorff );</div>
<div class="line"><a name="l00243"></a><span class="lineno"> 243</span>  </div>
<div class="line"><a name="l00244"></a><span class="lineno"> 244</span> <span class="preprocessor">#ifdef _OPENMP</span></div>
<div class="line"><a name="l00245"></a><span class="lineno"> 245</span> <span class="preprocessor">#pragma omp parallel if (Gpu::notInLaunchRegion())</span></div>
<div class="line"><a name="l00246"></a><span class="lineno"> 246</span> <span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00247"></a><span class="lineno"> 247</span>  <span class="keywordflow">for</span> ( MFIter mfi(eddyViscosity,TilingIfNotGPU()); mfi.isValid(); ++mfi)</div>
<div class="line"><a name="l00248"></a><span class="lineno"> 248</span>  {</div>
<div class="line"><a name="l00249"></a><span class="lineno"> 249</span>  Box bxcc = mfi.tilebox();</div>
<div class="line"><a name="l00250"></a><span class="lineno"> 250</span>  Box planex = bxcc; planex.setSmall(0, 1); planex.setBig(0, ngc); planex.grow(1,1);</div>
<div class="line"><a name="l00251"></a><span class="lineno"> 251</span>  Box planey = bxcc; planey.setSmall(1, 1); planey.setBig(1, ngc); planey.grow(0,1);</div>
<div class="line"><a name="l00252"></a><span class="lineno"> 252</span>  bxcc.growLo(0,ngc); bxcc.growHi(0,ngc);</div>
<div class="line"><a name="l00253"></a><span class="lineno"> 253</span>  bxcc.growLo(1,ngc); bxcc.growHi(1,ngc);</div>
<div class="line"><a name="l00254"></a><span class="lineno"> 254</span>  </div>
<div class="line"><a name="l00255"></a><span class="lineno"> 255</span>  <span class="keyword">const</span> Array4<Real>& mu_turb = eddyViscosity.array(mfi);</div>
<div class="line"><a name="l00256"></a><span class="lineno"> 256</span>  </div>
<div class="line"><a name="l00257"></a><span class="lineno"> 257</span>  <span class="keywordflow">for</span> (<span class="keyword">auto</span> n = 1; n < (<a class="code" href="namespaceEddyDiff.html#a45268689de46663ab6458f48c6878fc5aa3900ab375460932d825b615bb532446">EddyDiff::NumDiffs</a>-1)/2; ++n) {</div>
<div class="line"><a name="l00258"></a><span class="lineno"> 258</span>  <span class="keywordtype">int</span> <a class="code" href="ERF__ReadBndryPlanes_8cpp.html#a63d3125f6fd361f61d697799f46da817">offset</a> = (<a class="code" href="namespaceEddyDiff.html#a45268689de46663ab6458f48c6878fc5aa3900ab375460932d825b615bb532446">EddyDiff::NumDiffs</a>-1)/2;</div>
<div class="line"><a name="l00259"></a><span class="lineno"> 259</span>  <span class="keywordflow">switch</span> (n)</div>
<div class="line"><a name="l00260"></a><span class="lineno"> 260</span>  {</div>
<div class="line"><a name="l00261"></a><span class="lineno"> 261</span>  <span class="keywordflow">case</span> <a class="code" href="namespaceEddyDiff.html#a45268689de46663ab6458f48c6878fc5afa0c87454b22a819e328491f78bf6767">EddyDiff::KE_h</a>:</div>
<div class="line"><a name="l00262"></a><span class="lineno"> 262</span>  <span class="keywordflow">if</span> (use_KE) {</div>
<div class="line"><a name="l00263"></a><span class="lineno"> 263</span>  ParallelFor(bxcc, [=] AMREX_GPU_DEVICE (<span class="keywordtype">int</span> i, <span class="keywordtype">int</span> j, <span class="keywordtype">int</span> k) noexcept</div>
<div class="line"><a name="l00264"></a><span class="lineno"> 264</span>  {</div>
<div class="line"><a name="l00265"></a><span class="lineno"> 265</span>  <span class="keywordtype">int</span> indx = n;</div>
<div class="line"><a name="l00266"></a><span class="lineno"> 266</span>  <span class="keywordtype">int</span> indx_v = indx + <a class="code" href="ERF__ReadBndryPlanes_8cpp.html#a63d3125f6fd361f61d697799f46da817">offset</a>;</div>
<div class="line"><a name="l00267"></a><span class="lineno"> 267</span>  mu_turb(i,j,k,indx) = mu_turb(i,j,k,<a class="code" href="namespaceEddyDiff.html#a45268689de46663ab6458f48c6878fc5a2e96e6d5e84e7d7b9857e73159dfbe2b">EddyDiff::Mom_h</a>) * fac_ptr[indx-1];</div>
<div class="line"><a name="l00268"></a><span class="lineno"> 268</span>  mu_turb(i,j,k,indx_v) = mu_turb(i,j,k,indx);</div>
<div class="line"><a name="l00269"></a><span class="lineno"> 269</span>  });</div>
<div class="line"><a name="l00270"></a><span class="lineno"> 270</span>  }</div>
<div class="line"><a name="l00271"></a><span class="lineno"> 271</span>  <span class="keywordflow">break</span>;</div>
<div class="line"><a name="l00272"></a><span class="lineno"> 272</span>  <span class="keywordflow">default</span>:</div>
<div class="line"><a name="l00273"></a><span class="lineno"> 273</span>  ParallelFor(bxcc, [=] AMREX_GPU_DEVICE (<span class="keywordtype">int</span> i, <span class="keywordtype">int</span> j, <span class="keywordtype">int</span> k) noexcept</div>