own SNP scheme

[ryobon-dev]

Hi,

Fast-lineage-caller is really helpful for me.

As an advanced usage, I created my own SNP scheme and run with the below command.
(fast-lineage-caller) kansensho@DESKTOP-QBEDU0F:/mnt/e/Desktop/genome_analysis/lineage_test/test1/vcf$ fast-lineage-caller FY31KIH063.targets.csq.vcf --out results.tsv --count --scheme new_L2_scheme.tsv --keep

I got the result but it indicated NA although the expected result was L2.2.M2.3 in my own SNP scheme.

It seems like my SNP scheme has some fault.

I have enclosed my SNP scheme and result with txt file (original files were .tsv). Could you please check it to see if there are any problems on my SNP scheme ?
Anyway, the SNP scheme was originally published in Microbial Genomics 2021; 7:000697 (Thawornwattana et al.).

new_L2_scheme.txt
results.txt