Install IWC tools for usegalaxy.org 2025-11-21

usegalaxy.org/annotation.yml

@@ -150,3 +150,9 @@ tools:
   owner: bgruening
 - name: staramr
   owner: iuc
+- name: prodigal
+  owner: iuc
+- name: argnorm
+  owner: iuc
+- name: mmseqs2_taxonomy_assignment
+  owner: iuc

usegalaxy.org/annotation.yml.lock

@@ -615,3 +615,21 @@ tools:
   - eaa563bd535a
   tool_panel_section_id: annotation
   tool_panel_section_label: Annotation
+- name: prodigal
+  owner: iuc
+  revisions:
+  - 91791b6ecd38
+  tool_panel_section_id: annotation
+  tool_panel_section_label: Annotation
+- name: argnorm
+  owner: iuc
+  revisions:
+  - d8e95a03321a
+  tool_panel_section_id: annotation
+  tool_panel_section_label: Annotation
+- name: mmseqs2_taxonomy_assignment
+  owner: iuc
+  revisions:
+  - 876d26806584
+  tool_panel_section_id: annotation
+  tool_panel_section_label: Annotation

usegalaxy.org/fasta_fastq.yml

@@ -37,7 +37,7 @@ tools:
 - name: seqkit_grep
   owner: iuc
 - name: seqkit_split2
-  owner: iuc  
+  owner: iuc
 - name: fastq_paired_end_splitter
   owner: devteam
 - name: fastq_masker_by_quality
@@ -102,3 +102,5 @@ tools:
   owner: iuc
 - name: fasta_regex_finder
   owner: mbernt
+- name: seqkit_translate
+  owner: iuc

usegalaxy.org/fasta_fastq.yml.lock

@@ -458,3 +458,10 @@ tools:
   - 9a811adb714f
   tool_panel_section_id: fasta_fastq
   tool_panel_section_label: FASTA/FASTQ
+- name: seqkit_translate
+  owner: iuc
+  revisions:
+  - 0e0b003c711f
+  - d35d114c26a7
+  tool_panel_section_id: fasta_fastq
+  tool_panel_section_label: FASTA/FASTQ

usegalaxy.org/hicexplorer.yml.lock

@@ -66,33 +66,6 @@ tools:
   - f881c94fb3b3
   tool_panel_section_id: hicexplorer
   tool_panel_section_label: HiCExplorer
-- name: hicexplorer_chicqualitycontrol
-  owner: bgruening
-  revisions:
-  - 9ea228a9afc8
-  - a63e9713c39d
-  - b892fa1fcaec
-  - f6a169b5e43b
-  tool_panel_section_id: hicexplorer
-  tool_panel_section_label: HiCExplorer
-- name: hicexplorer_chicsignificantinteractions
-  owner: bgruening
-  revisions:
-  - 45a386d18509
-  - 640e0e45518a
-  - f8320df1866b
-  - ff1af7bac1cb
-  tool_panel_section_id: hicexplorer
-  tool_panel_section_label: HiCExplorer
-- name: hicexplorer_chicviewpoint
-  owner: bgruening
-  revisions:
-  - 37125838e360
-  - 40fee49bc6c3
-  - c4ed35f4f77f
-  - f881c94fb3b3
-  tool_panel_section_id: hicexplorer
-  tool_panel_section_label: HiCExplorer
 - name: hicexplorer_chicviewpointbackgroundmodel
   owner: bgruening
   revisions:

usegalaxy.org/metabolomics.yml

@@ -22,3 +22,5 @@ tools:
   owner: recetox
 - name: mfassignr_mfassign
   owner: recetox
+- name: table_pandas_rename_column
+  owner: recetox

usegalaxy.org/metabolomics.yml.lock

@@ -69,3 +69,10 @@ tools:
   - 22c80f584bb1
   tool_panel_section_id: metabolomics
   tool_panel_section_label: Metabolomics
+- name: table_pandas_rename_column
+  owner: recetox
+  revisions:
+  - 3f54cd56a65e
+  - 8537763e4713
+  tool_panel_section_id: metabolomics
+  tool_panel_section_label: Metabolomics

usegalaxy.org/metagenomic_analysis.yml.lock

@@ -973,13 +973,6 @@ tools:
   - fac3911ad3b6
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
-- name: cami_amber_convert
-  owner: iuc
-  revisions:
-  - 848594e0be6a
-  - fac3911ad3b6
-  tool_panel_section_id: metagenomic_analysis
-  tool_panel_section_label: Metagenomic Analysis
 - name: cami_amber
   owner: iuc
   revisions:

usegalaxy.org/multiple_alignments.yml

@@ -44,3 +44,5 @@ tools:
   owner: iuc
 - name: ucsc_maftoaxt
   owner: iuc
+- name: mmseqs2_easy_linclust_clustering
+  owner: iuc

usegalaxy.org/multiple_alignments.yml.lock

@@ -194,3 +194,9 @@ tools:
   - bb486fb0103d
   tool_panel_section_id: multiple_alignments
   tool_panel_section_label: Multiple Alignments
+- name: mmseqs2_easy_linclust_clustering
+  owner: iuc
+  revisions:
+  - b174c3405549
+  tool_panel_section_id: multiple_alignments
+  tool_panel_section_label: Multiple Alignments