Problem
CyTOF has several non-obvious requirements scattered across individual function docs:
- Data must be arcsinh-normalized and stored in the counts slot
ndim must equal the number of markers
- Normalization is automatically skipped
- Sketching uses all features instead of variable features
Users have to piece this together from multiple ?function pages.
Proposal
Add a single end-to-end CyTOF example — either as a vignette section or as an inst/scripts/run_clustopt_cytof.R template — that consolidates all CyTOF-specific requirements and walks through the full workflow.
Problem
CyTOF has several non-obvious requirements scattered across individual function docs:
ndimmust equal the number of markersUsers have to piece this together from multiple
?functionpages.Proposal
Add a single end-to-end CyTOF example — either as a vignette section or as an
inst/scripts/run_clustopt_cytof.Rtemplate — that consolidates all CyTOF-specific requirements and walks through the full workflow.