@@ -117,23 +117,23 @@ RUN \
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/opt/deepvariant/bin/run_pangenome_aware_deepvariant
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# Copy models
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- WORKDIR opt/models/pangenome_aware_deepvariant/wgs
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- ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wgs.pagenome .savedmodel/fingerprint.pb .
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- ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wgs.pagenome .savedmodel/saved_model.pb .
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- ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wgs.pagenome .savedmodel/example_info.json .
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- WORKDIR opt/models/pangenome_aware_deepvariant/wgs/variables
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- ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wgs.pagenome .savedmodel/variables/variables.data-00000-of-00001 .
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- ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wgs.pagenome .savedmodel/variables/variables.index .
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- RUN chmod -R +r opt/models/pangenome_aware_deepvariant/wgs/*
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-
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- WORKDIR opt/models/pangenome_aware_deepvariant/wes
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- ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wes.pagenome .savedmodel/fingerprint.pb .
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- ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wes.pagenome .savedmodel/saved_model.pb .
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- ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wes.pagenome .savedmodel/example_info.json .
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- WORKDIR opt/models/pangenome_aware_deepvariant/wes/variables
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- ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wes.pagenome .savedmodel/variables/variables.data-00000-of-00001 .
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- ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wes.pagenome .savedmodel/variables/variables.index .
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- RUN chmod -R +r opt/models/pangenome_aware_deepvariant/wes/*
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+ WORKDIR / opt/models/pangenome_aware_deepvariant/wgs
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+ ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wgs.pangenome .savedmodel/fingerprint.pb .
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+ ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wgs.pangenome .savedmodel/saved_model.pb .
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+ ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wgs.pangenome .savedmodel/example_info.json .
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+ WORKDIR / opt/models/pangenome_aware_deepvariant/wgs/variables
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+ ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wgs.pangenome .savedmodel/variables/variables.data-00000-of-00001 .
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+ ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wgs.pangenome .savedmodel/variables/variables.index .
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+ RUN chmod -R +r / opt/models/pangenome_aware_deepvariant/wgs/*
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+
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+ WORKDIR / opt/models/pangenome_aware_deepvariant/wes
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+ ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wes.pangenome .savedmodel/fingerprint.pb .
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+ ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wes.pangenome .savedmodel/saved_model.pb .
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+ ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wes.pangenome .savedmodel/example_info.json .
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+ WORKDIR / opt/models/pangenome_aware_deepvariant/wes/variables
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+ ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wes.pangenome .savedmodel/variables/variables.data-00000-of-00001 .
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+ ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wes.pangenome .savedmodel/variables/variables.index .
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+ RUN chmod -R +r / opt/models/pangenome_aware_deepvariant/wes/*
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ENV PATH="${PATH}":/opt/conda/bin:/opt/conda/envs/bio/bin:/opt/deepvariant/bin/pangenome_aware_deepvariant:/opt/deepvariant/bin
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