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lucasbrambrinkcopybara-github
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Update the default value of vaf_context_window to 51 for WGS and Hybrid.
PiperOrigin-RevId: 678990451
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scripts/run_deepvariant.py

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@@ -293,7 +293,7 @@ class SmallModelConfig:
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small_model_checkpoint='/opt/smallmodels/wgs',
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snp_gq_threshold=25,
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indel_gq_threshold=30,
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vaf_context_window=11,
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vaf_context_window=51,
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),
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ModelType.PACBIO: SmallModelConfig(
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small_model_checkpoint='/opt/smallmodels/pacbio',
@@ -311,7 +311,7 @@ class SmallModelConfig:
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small_model_checkpoint='/opt/smallmodels/hybrid_pacbio_illumina',
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snp_gq_threshold=25,
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indel_gq_threshold=30,
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vaf_context_window=11,
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vaf_context_window=51,
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),
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}
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