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vaf_context_window
1 parent f4bd513 commit c5c3ad7Copy full SHA for c5c3ad7
scripts/run_deepvariant.py
@@ -293,7 +293,7 @@ class SmallModelConfig:
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small_model_checkpoint='/opt/smallmodels/wgs',
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snp_gq_threshold=25,
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indel_gq_threshold=30,
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- vaf_context_window=11,
+ vaf_context_window=51,
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),
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ModelType.PACBIO: SmallModelConfig(
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small_model_checkpoint='/opt/smallmodels/pacbio',
@@ -311,7 +311,7 @@ class SmallModelConfig:
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small_model_checkpoint='/opt/smallmodels/hybrid_pacbio_illumina',
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}
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