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Copy pathVisualizeSequenceCurveActionListener.java
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678 lines (569 loc) · 33.1 KB
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/** Author: Shikhar K Gupta, Foram Joshi
* Project: 3DNA
* Mentor: Prof. Manish K Gupta
*/
import com.sun.j3d.loaders.Scene;
import com.sun.j3d.loaders.objectfile.ObjectFile;
import com.sun.j3d.utils.behaviors.mouse.MouseRotate;
import com.sun.j3d.utils.geometry.*;
import com.sun.j3d.utils.picking.PickCanvas;
import com.sun.j3d.utils.picking.PickResult;
import com.sun.j3d.utils.universe.SimpleUniverse;
import com.sun.j3d.utils.universe.ViewingPlatform;
import javax.media.j3d.*;
import javax.swing.*;
import javax.swing.text.BadLocationException;
import javax.swing.text.Style;
import javax.swing.text.StyleConstants;
import javax.swing.text.StyledDocument;
import javax.vecmath.Color3f;
import javax.vecmath.Point3d;
import javax.vecmath.Vector3f;
import java.awt.*;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import java.awt.event.MouseEvent;
import java.awt.event.MouseListener;
import java.util.ArrayList;
public class VisualizeSequenceCurveActionListener implements ActionListener, MouseListener {
@Override
public void actionPerformed(ActionEvent e) {
isVisualizePlaneSelected=true;
visualizePlaneFrame = new JFrame("3DNA Sequence Curve Visualization");
visualizePlaneFrame.setVisible(true);
visualizePlaneFrame.setExtendedState(JFrame.MAXIMIZED_BOTH);
visualizePlaneFrame.setDefaultCloseOperation(JFrame.DISPOSE_ON_CLOSE);
//Initialize the visualizeFrameBasePanel
visualizePlaneFrameBasePanel = new JPanel();
visualizePlaneFrameBasePanel.setLayout(new BorderLayout());
visualizePlaneFrame.getContentPane().add(visualizePlaneFrameBasePanel);
//Initialize LeftJToolbar
initializeLeftJToolBar();
visualizePlaneFrameBasePanel.add(leftJToolBar,BorderLayout.WEST);
//Initialize RightJToolbar
initializeRightJToolBar();
visualizePlaneFrameBasePanel.add(rightJToolBar,BorderLayout.EAST);
VisualizeSequenceCurveActionListener.printSuccess("Visualization Canvas has been initiated....");
//Initialize Canvas3D
initializeCanvas3D();
visualizePlaneFrameBasePanel.add(visualizePlaneCanvas,BorderLayout.CENTER);
}
public static void initializeRightJToolBar(){
rightJToolBar = new JToolBar("Visualization Status Toolbar", JToolBar.VERTICAL);
rightJToolBar.setBackground(Color.DARK_GRAY);
removeFocusButton = new JButton("<html><style>h4{color:white;}</style><h4> Remove Focus </h4></html>");
removeFocusButton.setBackground(Color.DARK_GRAY);
removeFocusButton.setEnabled(false);
removeFocusButton.addActionListener(new ActionListener() {
@Override
public void actionPerformed(ActionEvent actionEvent) {
removeFocusButton.setEnabled(false);
for (int i =0; masterTrans.getAllChildren().hasMoreElements();i++){
try {
if(masterTrans.getChild(i).getClass().getName().equals("javax.media.j3d.BranchGroup")){
masterTrans.removeChild(i);
isHighlightSelected=false;
break;
}
} catch (ArrayIndexOutOfBoundsException e) {
System.out.println("Index out of bounds");
}
}
}
});
visualizePlaneLog = new JTextPane();
visualizePlaneLog.setEditable(false);
visualizePlaneDoc = visualizePlaneLog.getStyledDocument();
visualizePlaneStyle = visualizePlaneLog.addStyle("3DNA Style", null);
visualizePlaneLog.setBackground(Color.DARK_GRAY);
visualizePlaneLogScrollPane = new JScrollPane(visualizePlaneLog);
visualizePlaneLogScrollPane.setBackground(Color.DARK_GRAY);
rightJToolBar.add(removeFocusButton);
rightJToolBar.add(visualizePlaneLogScrollPane);
}
public void initializeLeftJToolBar(){
leftJToolBar = new JToolBar("Visualization Control Toolbar", JToolBar.VERTICAL);
leftJToolBar.setBackground(Color.DARK_GRAY);
// Add leftJToolBar Images and Buttons
ImageIcon zoominIcon = new ImageIcon("icons/zoomin.png");
ImageIcon zoomoutIcon = new ImageIcon("icons/zoomout.png");
ImageIcon upArrowIcon = new ImageIcon("icons/arrow-up.png");
ImageIcon downArrowIcon = new ImageIcon("icons/arrow-down.png");
ImageIcon leftArrowIcon = new ImageIcon("icons/arrow-left.png");
ImageIcon rightArrowIcon = new ImageIcon("icons/arrow-right.png");
ImageIcon previousIcon = new ImageIcon("icons/previous.png");
ImageIcon nextIcon = new ImageIcon("icons/next.png");
zoomInButton = new JButton(zoominIcon);
zoomInButton.setBackground(Color.DARK_GRAY);
zoomOutButton = new JButton(zoomoutIcon);
zoomOutButton.setBackground(Color.DARK_GRAY);
upButton = new JButton(upArrowIcon);
upButton.setBackground(Color.DARK_GRAY);
downButton = new JButton(downArrowIcon);
downButton.setBackground(Color.DARK_GRAY);
leftButton = new JButton(leftArrowIcon);
leftButton.setBackground(Color.DARK_GRAY);
rightButton = new JButton(rightArrowIcon);
rightButton.setBackground(Color.DARK_GRAY);
previousPlaneButton = new JButton(previousIcon);
previousPlaneButton.setBackground(Color.DARK_GRAY);
nextPlaneButton= new JButton(nextIcon);
nextPlaneButton.setBackground(Color.DARK_GRAY);
zoomInButton.addActionListener(new VisualizationZoomInActionListener());
zoomOutButton.addActionListener(new VisualizationZoomOutActionListener());
upButton.addActionListener(new VisualizationUpButtonActionListener());
downButton.addActionListener(new VisualizationDownButtonActionListener());
leftButton.addActionListener(new VisualizationLeftButtonActionListener());
rightButton.addActionListener(new VisualizationRightButtonActionListener());
nextPlaneButton.addActionListener(new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
displayPlane++;
if(displayPlane<=MainFrame.depth){
visualizePlaneScene.detach();
visualizePlaneScene=createSceneGraph();
visualizePlaneScene.setCapability(BranchGroup.ALLOW_DETACH);
visualizePlaneScene.compile();
visualizationPlaneSimpleUniverse.addBranchGraph(visualizePlaneScene);
visualizePlanePickCanvas= new PickCanvas(visualizePlaneCanvas, visualizePlaneScene);
visualizePlanePickCanvas.setMode(PickCanvas.GEOMETRY);
}else {
JOptionPane.showMessageDialog(null, "Canvas plane at maximum depth",
"Error!", JOptionPane.ERROR_MESSAGE);
}
}
});
previousPlaneButton.addActionListener(new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
displayPlane--;
if(displayPlane>=1){
visualizePlaneScene.detach();
visualizePlaneScene=createSceneGraph();
visualizePlaneScene.setCapability(BranchGroup.ALLOW_DETACH);
visualizePlaneScene.compile();
visualizationPlaneSimpleUniverse.addBranchGraph(visualizePlaneScene);
visualizePlanePickCanvas= new PickCanvas(visualizePlaneCanvas, visualizePlaneScene);
visualizePlanePickCanvas.setMode(PickCanvas.GEOMETRY);
VisualizeSequenceCurveActionListener.printMessage("Plane Number: "+displayPlane);
}else {
JOptionPane.showMessageDialog(null, "Canvas plane at minimum depth",
"Error!", JOptionPane.ERROR_MESSAGE);
}
}
});
leftJToolBar.add(zoomInButton);
leftJToolBar.add(zoomOutButton);
leftJToolBar.add(upButton);
leftJToolBar.add(leftButton);
leftJToolBar.add(rightButton);
leftJToolBar.add(downButton);
leftJToolBar.add(previousPlaneButton);
leftJToolBar.add(nextPlaneButton);
}
public static void printSuccess (String text){
visualizePlaneStyle.addAttribute(StyleConstants.FontFamily, "Lucida Console");
visualizePlaneStyle.addAttribute(StyleConstants.FontSize, new Integer(14));
StyleConstants.setForeground(visualizePlaneStyle, Color.CYAN);
try { visualizePlaneDoc.insertString(visualizePlaneDoc.getLength(), ">>>" +text + "\n",visualizePlaneStyle);
visualizePlaneLog.setCaretPosition(visualizePlaneLog.getDocument().getLength());}
catch (BadLocationException e){}
}
public static void printMessage (String text){
visualizePlaneStyle.addAttribute(StyleConstants.FontFamily, "Lucida Console");
visualizePlaneStyle.addAttribute(StyleConstants.FontSize, new Integer(14));
StyleConstants.setForeground(visualizePlaneStyle, Color.GREEN);
try { visualizePlaneDoc.insertString(visualizePlaneDoc.getLength(), ">>>" +text + "\n",visualizePlaneStyle);
visualizePlaneLog.setCaretPosition(visualizePlaneLog.getDocument().getLength());}
catch (BadLocationException e){}
}
public static void printAlert (String text){
visualizePlaneStyle.addAttribute(StyleConstants.FontFamily, "Lucida Console");
visualizePlaneStyle.addAttribute(StyleConstants.FontSize, new Integer(14));
StyleConstants.setForeground(visualizePlaneStyle, Color.PINK);
try { visualizePlaneDoc.insertString(visualizePlaneDoc.getLength(), ">>>" +text + "\n",visualizePlaneStyle);
visualizePlaneLog.setCaretPosition(visualizePlaneLog.getDocument().getLength());}
catch (BadLocationException e){}
}
public void initializeCanvas3D(){
visualizePlaneCanvas = new Canvas3D(SimpleUniverse.getPreferredConfiguration());
visualizationPlaneSimpleUniverse = new SimpleUniverse(visualizePlaneCanvas);
//initialize viewing platform
viewingPlatform = visualizationPlaneSimpleUniverse.getViewingPlatform();
//define background colors for the Canvas
BranchGroup backgroundBranchGroup = new BranchGroup();
Background background = new Background(new Color3f(1f,1f,1f));
BoundingSphere sphere = new BoundingSphere(new Point3d(0,0,0), 100000);
background.setApplicationBounds(sphere);
backgroundBranchGroup.addChild(background);
viewingPlatform.addChild(backgroundBranchGroup);
//setting the Viewing Platform with the initial values
canvasX = 2.0f;
canvasY = 2.0f;
canvasZ = 30.0f;
TransformGroup View_TransformGroup = viewingPlatform.getMultiTransformGroup().getTransformGroup(0); // get the TransformGroup associated
Transform3D View_Transform3D = new Transform3D(); // create a Transform3D for the ViewingPlatform
View_TransformGroup.getTransform(View_Transform3D); // get the current 3d from the ViewingPlatform
View_Transform3D.setTranslation(new Vector3f(canvasX,canvasY,canvasZ)); // set 3d to x=0, y=0, z=20
View_TransformGroup.setTransform(View_Transform3D); // assign Transform3D to ViewPlatform
//initialize visualizeScene
visualizePlaneScene = createSceneGraph();
visualizePlaneScene.setCapability(BranchGroup.ALLOW_DETACH);
visualizePlaneScene.compile();
visualizationPlaneSimpleUniverse.addBranchGraph(visualizePlaneScene);
visualizePlanePickCanvas= new PickCanvas(visualizePlaneCanvas, visualizePlaneScene);
visualizePlanePickCanvas.setMode(PickCanvas.GEOMETRY);
visualizePlaneCanvas.addMouseListener(this);
}
public static BranchGroup createSceneGraph() {
objRoot = new BranchGroup();
objRoot.setCapability(Group.ALLOW_CHILDREN_EXTEND);
objRoot.setCapability(Group.ALLOW_CHILDREN_WRITE);
masterTrans = new TransformGroup();
masterTrans.setCapability(TransformGroup.ALLOW_TRANSFORM_READ);
masterTrans.setCapability(TransformGroup.ALLOW_TRANSFORM_WRITE);
masterTrans.setCapability(Group.ALLOW_CHILDREN_EXTEND);
masterTrans.setCapability(Group.ALLOW_CHILDREN_WRITE);
rotateBehaviour=new MouseRotate();
rotateBehaviour.setTransformGroup(masterTrans);
rotateBehaviour.setSchedulingBounds(new BoundingSphere());
masterTrans.addChild(rotateBehaviour);
int x1, y1, z1, x2, y2, z2, x3, y3, z3, x4, y4, z4;
int canvasDomainXCoordinate, canvasDomainYCoordinate, canvasDomainZCoordinate;
ArrayList<VoxelToBrick> dnaSequenceDate = ImportSequencesCoordinatesMap.brickList;
for (int i = 0; i < dnaSequenceDate.size(); i++) {
//identify and print for domains 1 and 2(HalfBrick)
if (dnaSequenceDate.get(i).x3 == -1 && dnaSequenceDate.get(i).z2 == displayPlane ) {
x1 = dnaSequenceDate.get(i).x1;
y1 = dnaSequenceDate.get(i).y1;
z1 = dnaSequenceDate.get(i).z1;
x2 = dnaSequenceDate.get(i).x2;
y2 = dnaSequenceDate.get(i).y2;
z2 = dnaSequenceDate.get(i).z2;
System.out.println("Printing Domain12HalfBrick"+x1+":"+y1+":"+z1+","+x2+":"+y2+":"+z2);
canvasDomainXCoordinate = x2;
canvasDomainYCoordinate = y2;
canvasDomainZCoordinate = z2;
//Code for Domain12
// getDomain12Block((float) canvasDomainXCoordinate, (float) canvasDomainYCoordinate, (float) canvasDomainZCoordinate, dnaSequenceDate.get(i).getCompleteSequence());
}else if (dnaSequenceDate.get(i).x1 == -1 && dnaSequenceDate.get(i).z3 == displayPlane) {//identify and print for domains 3 and 4(HalfBrick)
x3 = dnaSequenceDate.get(i).x3;
y3 = dnaSequenceDate.get(i).y3;
z3 = dnaSequenceDate.get(i).z3;
x4 = dnaSequenceDate.get(i).x4;
y4 = dnaSequenceDate.get(i).y4;
z4 = dnaSequenceDate.get(i).z4;
System.out.println("Printing Domain34HalfBrick"+x3+":"+y3+":"+z3+","+x4+":"+y4+":"+z4);
canvasDomainXCoordinate = x3;
canvasDomainYCoordinate = y3;
canvasDomainZCoordinate = z3;
//Code for Domain34
// getDomain34Block((float) canvasDomainXCoordinate, (float) canvasDomainYCoordinate, (float) canvasDomainZCoordinate ,dnaSequenceDate.get(i).getCompleteSequence());
}else {//identify and print for full bricks(FullBrick)
x1 = dnaSequenceDate.get(i).x1;
y1 = dnaSequenceDate.get(i).y1;
z1 = dnaSequenceDate.get(i).z1;
x2 = dnaSequenceDate.get(i).x2;
y2 = dnaSequenceDate.get(i).y2;
z2 = dnaSequenceDate.get(i).z2;
x3 = dnaSequenceDate.get(i).x3;
y3 = dnaSequenceDate.get(i).y3;
z3 = dnaSequenceDate.get(i).z3;
x4 = dnaSequenceDate.get(i).x4;
y4 = dnaSequenceDate.get(i).y4;
z4 = dnaSequenceDate.get(i).z4;
//Code for adding Domain1234(FullBrick) based on their orientation
if(z2%4 == 0 && dnaSequenceDate.get(i).z2 == displayPlane){
canvasDomainXCoordinate = x2;
canvasDomainYCoordinate = y2;
canvasDomainZCoordinate = z2;
System.out.println("Printing North Brick"+x1+":"+y1+":"+z1+","+x2+":"+y2+":"+z2+","+x3+":"+y3+":"+z3+","+x4+":"+y4+":"+z4);
// getDomain1234NorthBlock((float) canvasDomainXCoordinate, (float) canvasDomainYCoordinate, (float) canvasDomainZCoordinate, dnaSequenceDate.get(i).getCompleteSequence());
}else if(z2%4 == 1 && dnaSequenceDate.get(i).z2 == displayPlane ){
canvasDomainXCoordinate = x2;
canvasDomainYCoordinate = y2;
canvasDomainZCoordinate = z2;
System.out.println("Printing West Brick"+x1+":"+y1+":"+z1+","+x2+":"+y2+":"+z2+","+x3+":"+y3+":"+z3+","+x4+":"+y4+":"+z4);
getDomain1234WestBlock((float) canvasDomainXCoordinate, (float) canvasDomainYCoordinate, (float) canvasDomainZCoordinate, dnaSequenceDate.get(i).getCompleteSequence());
}else if(z2%4 == 2 && dnaSequenceDate.get(i).z2 == displayPlane){
canvasDomainXCoordinate = x2;
canvasDomainYCoordinate = y2;
canvasDomainZCoordinate = z2;
System.out.println("Printing South Brick"+x1+":"+y1+":"+z1+","+x2+":"+y2+":"+z2+","+x3+":"+y3+":"+z3+","+x4+":"+y4+":"+z4);
// getDomain1234SouthBlock((float) canvasDomainXCoordinate, (float) canvasDomainYCoordinate, (float) canvasDomainZCoordinate,dnaSequenceDate.get(i).getCompleteSequence());
}else if(z2%4 == 3 && dnaSequenceDate.get(i).z2 == displayPlane){
canvasDomainXCoordinate = x2;
canvasDomainYCoordinate = y2;
canvasDomainZCoordinate = z2;
System.out.println("Printing East Brick"+x1+":"+y1+":"+z1+","+x2+":"+y2+":"+z2+","+x3+":"+y3+":"+z3+","+x4+":"+y4+":"+z4);
// getDomain1234EastBlock((float) canvasDomainXCoordinate, (float) canvasDomainYCoordinate, (float) canvasDomainZCoordinate,dnaSequenceDate.get(i).getCompleteSequence());
}
}
}
/**Code for creating 3DNA Domain Blocks
*The building units of the Visualization class comprises of 3 modular Blocks viz. domain12Block, domain34Block,
* domain1234Block
* Each block has its own domainXX[XX]tg, domainXX[XX]t3d, domainxx[XX]CoverBoxTransformGroup,
* domainxx[XX]CoverBoxTransform3D, domainxx[XX]CoverBox, lightForDomainxx[XX].
* The final parameters which will be used for creating the visualization canvas will include:
* domainBlockxx[XX]tg and domainBlockxx[XX]t3d
*/
objRoot.addChild(masterTrans);
return objRoot;
}
public static void getDomain12Block(float x, float y, float z, String sequence){
}
public static void getDomain34Block(float x, float y, float z, String sequence){
}
public static void getDomain1234NorthBlock(float x, float y, float z, String sequence){
DNATransformGroup domain1234CoverBoxTransformGroup = new DNATransformGroup();
Transform3D domain1234CoverBoxTransform3D = new Transform3D();
TransformGroup domain1234tg = new TransformGroup();
Transform3D domain1234t3d = new Transform3D();
domain1234CoverBoxTransformGroup.setCapability(TransformGroup.ALLOW_TRANSFORM_WRITE);
domain1234CoverBoxTransformGroup.setCapability(TransformGroup.ALLOW_TRANSFORM_READ);
lightForDomain1234North = new AmbientLight();
domainBlock1234tg = new DNATransformGroup();
domainBlock1234t3d = new Transform3D();
domainBlock1234tg.addChild(domain1234tg);
domainBlock1234tg.addChild(domain1234CoverBoxTransformGroup);
domainBlock1234tg.setSequence(sequence);
domainBlock1234tg.setCordinate(x,y,z);
domainBlock1234tg.isHalfBrick=false;
domainBlock1234tg.setCapability(Node.ALLOW_PICKABLE_READ);
domainBlock1234tg.setCapability(Node.ALLOW_PICKABLE_WRITE);
domainBlock1234tg.setCapability(Node.ENABLE_PICK_REPORTING);
Vector3f domainBlock1234Position = new Vector3f(1f+z,MainFrame.height-y+0.5f,x);
domainBlock1234t3d.setTranslation(domainBlock1234Position);
domainBlock1234tg.setTransform(domainBlock1234t3d);
lightForDomain1234North.setEnable(true);
lightForDomain1234North.setColor(new Color3f(0/255f, 0/255f, 255/255f));
lightForDomain1234North.setInfluencingBounds(bounds);
lightForDomain1234North.addScope(domain1234tg);
lightForDomain1234North.addScope(domain1234CoverBoxTransformGroup);
masterTrans.addChild(lightForDomain1234North);
masterTrans.addChild(domainBlock1234tg);
}
public static void getDomain1234WestBlock(float x, float y, float z, String sequence){
}
public static void getDomain1234SouthBlock(float x, float y, float z, String sequence){
DNATransformGroup domain1234CoverBoxTransformGroup = new DNATransformGroup();
Transform3D domain1234CoverBoxTransform3D = new Transform3D();
TransformGroup domain1234tg = new TransformGroup();
Transform3D domain1234t3d = new Transform3D();
Transform3D rotation1234 = new Transform3D();
rotation1234.rotX(Math.PI);
domain1234CoverBoxTransformGroup.setCapability(TransformGroup.ALLOW_TRANSFORM_WRITE);
domain1234CoverBoxTransformGroup.setCapability(TransformGroup.ALLOW_TRANSFORM_READ);
try
{
Scene scene1 = null;
ObjectFile f = new ObjectFile ();
f.setFlags (ObjectFile.RESIZE | ObjectFile.TRIANGULATE | ObjectFile.STRIPIFY);
String s1 = "FullBrick.obj";
scene1 = f.load (s1);
domain1234tg.addChild (scene1.getSceneGroup ());
domain1234tg.setTransform(domain1234t3d);
Appearance ap = new Appearance();
Color3f col = new Color3f(1.0f, 0.0f, 1.0f);
ColoringAttributes ca = new ColoringAttributes(col, ColoringAttributes.NICEST);
ap.setColoringAttributes(ca);
TransparencyAttributes transparencyAttributes = new TransparencyAttributes(TransparencyAttributes.NICEST,0.7f);
ap.setTransparencyAttributes( transparencyAttributes );
com.sun.j3d.utils.geometry.Box domain1234CoverBox = new com.sun.j3d.utils.geometry.Box(1f, 1f, 0.5f, ap);
domain1234CoverBoxTransformGroup.setTransform(domain1234CoverBoxTransform3D);
domain1234CoverBoxTransformGroup.addChild(domain1234CoverBox);
}
catch (java.io.FileNotFoundException ex){
}
lightForDomain1234South = new AmbientLight();
domainBlock1234tg = new DNATransformGroup();
domainBlock1234t3d = new Transform3D();
domainBlock1234tg.addChild(domain1234tg);
domainBlock1234tg.addChild(domain1234CoverBoxTransformGroup);
domainBlock1234tg.setSequence(sequence);
domainBlock1234tg.setCordinate(x,y,z);
domainBlock1234tg.isHalfBrick=false;
domainBlock1234tg.setCapability(Node.ALLOW_PICKABLE_READ);
domainBlock1234tg.setCapability(Node.ALLOW_PICKABLE_WRITE);
domainBlock1234tg.setCapability(Node.ENABLE_PICK_REPORTING);
domainBlock1234t3d.mul(rotation1234);
Vector3f domainBlock1234Position = new Vector3f(1f+z,MainFrame.height-y-0.5f,x);
domainBlock1234t3d.setTranslation(domainBlock1234Position);
domainBlock1234tg.setTransform(domainBlock1234t3d);
lightForDomain1234South.setEnable(true);
lightForDomain1234South.setColor(new Color3f(255/255f, 0/255f, 255/255f));
lightForDomain1234South.setInfluencingBounds(bounds);
lightForDomain1234South.addScope(domain1234tg);
lightForDomain1234South.addScope(domain1234CoverBoxTransformGroup);
masterTrans.addChild(lightForDomain1234South);
masterTrans.addChild(domainBlock1234tg);
}
public static void getDomain1234EastBlock(float x, float y, float z, String sequence){
DNATransformGroup domain1234CoverBoxTransformGroup = new DNATransformGroup();
Transform3D domain1234CoverBoxTransform3D = new Transform3D();
TransformGroup domain1234tg = new TransformGroup();
Transform3D domain1234t3d = new Transform3D();
Transform3D rotation1234X = new Transform3D();
rotation1234X.rotX(3*Math.PI/2);
domain1234CoverBoxTransformGroup.setCapability(TransformGroup.ALLOW_TRANSFORM_WRITE);
domain1234CoverBoxTransformGroup.setCapability(TransformGroup.ALLOW_TRANSFORM_READ);
try
{
Scene scene1 = null;
ObjectFile f = new ObjectFile ();
f.setFlags (ObjectFile.RESIZE | ObjectFile.TRIANGULATE | ObjectFile.STRIPIFY);
String s1 = "FullBrick.obj";
scene1 = f.load (s1);
domain1234tg.addChild (scene1.getSceneGroup ());
domain1234tg.setTransform(domain1234t3d);
Appearance ap = new Appearance();
Color3f col = new Color3f(0.0f, 1.0f, 1.0f);
ColoringAttributes ca = new ColoringAttributes(col, ColoringAttributes.NICEST);
ap.setColoringAttributes(ca);
TransparencyAttributes transparencyAttributes = new TransparencyAttributes(TransparencyAttributes.NICEST,0.7f);
ap.setTransparencyAttributes( transparencyAttributes );
com.sun.j3d.utils.geometry.Box domain1234CoverBox = new com.sun.j3d.utils.geometry.Box(1f, 1f, 0.5f, ap);
domain1234CoverBoxTransformGroup.setTransform(domain1234CoverBoxTransform3D);
domain1234CoverBoxTransformGroup.addChild(domain1234CoverBox); }
catch (java.io.FileNotFoundException ex){
}
lightForDomain1234East = new AmbientLight();
domainBlock1234tg = new DNATransformGroup();
domainBlock1234t3d = new Transform3D();
domainBlock1234tg.addChild(domain1234tg);
domainBlock1234tg.addChild(domain1234CoverBoxTransformGroup);
domainBlock1234tg.setSequence(sequence);
domainBlock1234tg.setCordinate(x,y,z);
domainBlock1234tg.isHalfBrick=false;
domainBlock1234tg.setCapability(Node.ALLOW_PICKABLE_READ);
domainBlock1234tg.setCapability(Node.ALLOW_PICKABLE_WRITE);
domainBlock1234tg.setCapability(Node.ENABLE_PICK_REPORTING);
domainBlock1234t3d.mul(rotation1234X);
Vector3f domainBlock1234Position = new Vector3f(1f+z,MainFrame.height-y,x+0.5f);
domainBlock1234t3d.setTranslation(domainBlock1234Position);
domainBlock1234tg.setTransform(domainBlock1234t3d);
lightForDomain1234East.setEnable(true);
lightForDomain1234East.setColor(new Color3f(0/255f, 255/255f, 255/255f));
lightForDomain1234East.setInfluencingBounds(bounds);
lightForDomain1234East.addScope(domain1234tg);
lightForDomain1234East.addScope(domain1234CoverBoxTransformGroup);
masterTrans.addChild(lightForDomain1234East);
masterTrans.addChild(domainBlock1234tg);
}
@Override
public void mouseClicked(MouseEvent e) {
if (!isHighlightSelected) {
visualizePlanePickCanvas.setShapeLocation(e);
PickResult mouseClickResult = visualizePlanePickCanvas.pickClosest();
if (mouseClickResult == null) {
int xCord=e.getX();
int yCord=e.getY();
System.out.println("Nothing selected at xCord "+xCord+" yCord"+yCord);
} else {
isHighlightSelected=true;
DNATransformGroup pickedSequence = (DNATransformGroup)mouseClickResult.getNode(PickResult.TRANSFORM_GROUP);
if (pickedSequence!= null) {
VisualizeSequenceCurveActionListener.printSuccess(pickedSequence.getSequence());
Sphere sphere = new Sphere(1.0f);
Appearance sphereAppearance = new Appearance();
Color3f col = new Color3f(0.0f, 0.0f, 1.0f);
ColoringAttributes ca = new ColoringAttributes(col, ColoringAttributes.NICEST);
sphereAppearance.setColoringAttributes(ca);
TransparencyAttributes transparencyAttributes = new TransparencyAttributes(TransparencyAttributes.NICEST,0.6f);
sphereAppearance.setTransparencyAttributes(transparencyAttributes);
sphere.setAppearance(sphereAppearance);
TransformGroup sphereTransformGroup= new TransformGroup();
Transform3D sphereTransform3D = new Transform3D();
sphereTransformGroup.addChild(sphere);
Vector3f spherePosition;
if(pickedSequence.isHalfBrick){
if(pickedSequence.isDomain12){
spherePosition = new Vector3f(pickedSequence.zCord -0.5f, MainFrame.height -pickedSequence.yCord, pickedSequence.xCord);
} else {
spherePosition = new Vector3f(pickedSequence.zCord -0.5f, MainFrame.height -pickedSequence.yCord, pickedSequence.xCord);
}
}else{
if(!pickedSequence.isHalfBrick && pickedSequence.zCord%4 ==0){
spherePosition = new Vector3f(pickedSequence.zCord, MainFrame.height -pickedSequence.yCord+0.5f, pickedSequence.xCord);
}
else if(!pickedSequence.isHalfBrick && pickedSequence.zCord%4 ==1){
spherePosition = new Vector3f(pickedSequence.zCord -0.5f , MainFrame.height -pickedSequence.yCord, pickedSequence.xCord - 0.5f);
}
else if(!pickedSequence.isHalfBrick && pickedSequence.zCord%4 ==2){
spherePosition = new Vector3f(pickedSequence.zCord, MainFrame.height -pickedSequence.yCord -0.5f, pickedSequence.xCord);
}
else{
spherePosition = new Vector3f(pickedSequence.zCord , MainFrame.height -pickedSequence.yCord, pickedSequence.xCord + 0.5f);
}
}
sphere.setBounds(pickedSequence.getBounds());
sphereTransform3D.setTranslation(spherePosition);
sphereTransformGroup.setTransform(sphereTransform3D);
BranchGroup coverSphereBranchGroup = new BranchGroup();
coverSphereBranchGroup.setCapability(BranchGroup.ALLOW_DETACH);
coverSphereBranchGroup.addChild(sphereTransformGroup);
removeFocusButton.setEnabled(true);
masterTrans.addChild(coverSphereBranchGroup);
}else{
VisualizeSequenceCurveActionListener.printAlert("Unidentified Class");
}
}
}
}
@Override
public void mousePressed(MouseEvent e) {
}
@Override
public void mouseReleased(MouseEvent e) {
}
@Override
public void mouseEntered(MouseEvent e) {
}
@Override
public void mouseExited(MouseEvent e) {
}
public static JTextPane visualizePlaneLog;
public static StyledDocument visualizePlaneDoc;
public static Style visualizePlaneStyle;
public static JScrollPane visualizePlaneLogScrollPane;
public static AmbientLight lightForDomain1234North;
public static AmbientLight lightForDomain1234West;
public static AmbientLight lightForDomain1234South;
public static AmbientLight lightForDomain1234East;
public static TransformGroup masterTrans;
public static DNATransformGroup domainBlock12tg;
public static Transform3D domainBlock12t3d;
public static DNATransformGroup domainBlock34tg;
public static Transform3D domainBlock34t3d;
public static DNATransformGroup domainBlock1234tg;
public static Transform3D domainBlock1234t3d;
public static float canvasX;
public static float canvasY;
public static float canvasZ;
public static BranchGroup objRoot;
public static BranchGroup visualizePlaneScene;
public static ViewingPlatform viewingPlatform;
public static Canvas3D visualizePlaneCanvas;
public static SimpleUniverse visualizationPlaneSimpleUniverse;
public static JPanel visualizePlaneFrameBasePanel;
public static JFrame visualizePlaneFrame;
public static JToolBar leftJToolBar;
public static JToolBar rightJToolBar;
public static JButton zoomInButton;
public static JButton zoomOutButton;
public static JButton upButton;
public static JButton downButton;
public static JButton rightButton;
public static JButton leftButton;
public static JButton previousPlaneButton;
public static JButton nextPlaneButton;
public static MouseRotate rotateBehaviour;
public static BoundingSphere bounds;
public static Boolean isHighlightSelected= false;
public static float visualizePlaneCanvasStep = 1.00f;
public static PickCanvas visualizePlanePickCanvas;
public static JButton removeFocusButton;
public static boolean isVisualizePlaneSelected=false;
public static int displayPlane = 1;
}