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get human and mouse reference for cell ranger #13

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lpantano opened this issue Feb 20, 2025 · 0 comments
Open

get human and mouse reference for cell ranger #13

lpantano opened this issue Feb 20, 2025 · 0 comments
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@eberdan

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lpantano commented Feb 20, 2025 •
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HCBC path: /n/shared_db/bcbio/biodata

  • human 38: /n/shared_db/GRCh38/uk/cellranger
  • mouse 39: /n/shared_db/GRCm39/uk/cellranger
  • mm10

/n/shared_db/GRCh38-mm10/uk/cellranger
/n/shared_db/GRCh39-GRCm39/uk/cellranger

to support RNAseq, ATACseq and T/Bcell receptors.
@lpantano lpantano moved this to Backlog in Tools Feb 20, 2025
@lpantano lpantano added this to Tools Feb 20, 2025
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