update and fix urls to use https

Author: alexfikl

README.rst

@@ -28,13 +28,13 @@ performs constant folding, and it can compile its expressions into Python
 bytecode for fast(er) execution.
 
 If you are looking for a full-blown Computer Algebra System, look at
-`sympy <http://pypi.python.org/pypi/sympy>`_ or
-`PyGinac <http://pyginac.sourceforge.net/>`_. If you are looking for a
+`sympy <https://pypi.org/project/sympy/>`__ or
+`PyGinac <https://pyginac.sourceforge.net/>`__. If you are looking for a
 basic, small and extensible set of symbolic operations, pymbolic may
 well be for you.
 
 Resources:
 
-* `documentation <http://documen.tician.de/pymbolic>`_
-* `download <http://pypi.python.org/pypi/pymbolic>`_ (via the package index)
-* `source code via git <http://github.com/inducer/pymbolic>`_ (also bug tracker)
+* `PyPI package <https://pypi.org/project/pymbolic/>`__
+* `Documentation <https://documen.tician.de/pymbolic/>`__
+* `Source code (GitHub) <https://github.com/inducer/pymbolic>`__

doc/index.rst

@@ -101,9 +101,9 @@ As a final example, we can now derive from *MyMapper* to multiply all
 Pymbolic around the web
 -----------------------
 
-* `download <http://pypi.python.org/pypi/pymbolic>`_ (via the package index)
-* `documentation <http://documen.tician.de/pymbolic>`_
-* `source code via git <http://github.com/inducer/pymbolic>`_ (also bug tracker)
+* `PyPI package <https://pypi.org/project/pymbolic/>`__
+* `Documentation <https://documen.tician.de/pymbolic/>`__
+* `Source code (GitHub) <https://github.com/inducer/pymbolic>`__
 
 Contents
 --------

doc/misc.rst

@@ -5,17 +5,23 @@ This command should install :mod:`pymbolic`::
 
     pip install pymbolic
 
-You may need to run this with :command:`sudo`.
-If you don't already have `pip <https://pypi.python.org/pypi/pip>`_,
+You may need to run this with :command:`sudo` if you are not in a virtual environment
+(not recommended). If you don't already have `pip <https://pypi.org/project/pip>`__,
 run this beforehand::
 
-    curl -O https://raw.github.com/pypa/pip/master/contrib/get-pip.py
-    python get-pip.py
+    python -m ensurepip
 
-For a more manual installation, download the source, unpack it,
-and say::
+For a more manual installation, download the source, unpack it, and run::
 
-    python setup.py install
+    pip install .
+
+This should also install all the required dependencies (see ``pyproject.toml``
+for a complete list).
+
+For development, you may want to install in `editable mode
+<https://setuptools.pypa.io/en/latest/userguide/development_mode.html>`__::
+
+    pip install --no-build-isolation --editable .[test]
 
 Why pymbolic when there's already sympy?
 ========================================
@@ -65,10 +71,10 @@ At any rate, to answer your question, here goes:
 
     This part is a bit of a red herring though, since this can be
     implemented for sympy (and, in fact, `I have
-    <https://github.com/inducer/pymbolic/blob/master/pymbolic/sympy_interface.py#L71>`_).
+    <https://github.com/inducer/pymbolic/blob/main/pymbolic/interop/sympy.py#L47>`__).
     Also, I noticed that sympy's codegen module implements something similar (e.g.
     `here
-    <https://github.com/sympy/sympy/blob/master/sympy/printing/fcode.py#L174>`_).
+    <https://github.com/sympy/sympy/blob/master/sympy/printing/fortran.py#L70>`__).
     The remaining issue is that most of sympy's behaviors aren't available to
     extend in this style.
 
@@ -98,7 +104,7 @@ Version 2015.3
 .. note::
 
     This version is currently under development. You can get snapshots from
-    Pymbolic's `git repository <https://github.com/inducer/pymbolic>`_
+    Pymbolic's `git repository <https://github.com/inducer/pymbolic>`__
 
 * Add :mod:`pymbolic.geometric_algebra`.
 * First documented version.
@@ -133,19 +139,13 @@ WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
 FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
 OTHER DEALINGS IN THE SOFTWARE.
 
-Frequently Asked Questions
-==========================
-
-The FAQ is maintained collaboratively on the
-`Wiki FAQ page <http://wiki.tiker.net/Pymbolic/FrequentlyAskedQuestions>`_.
-
 Glossary
 ========
 
 .. glossary::
 
     mix-in
-        See `Wikipedia article <https://en.wikipedia.org/wiki/Mixin>`_.
+        See `Wikipedia article <https://en.wikipedia.org/wiki/Mixin>`__.
 
         Be sure to mention the mix-in before the base classe being mixed in the
         list of base classes. This way, the mix-in can override base class

pymbolic/algorithm.py

@@ -28,7 +28,7 @@
 def integer_power(x, n, one=1):
     """Compute :math:`x^n` using only multiplications.
 
-    See also the `C2 wiki <http://c2.com/cgi/wiki?IntegerPowerAlgorithm>`_.
+    See also the `C2 wiki <https://wiki.c2.com/?IntegerPowerAlgorithm>`__.
     """
 
     assert isinstance(n, int)
@@ -60,7 +60,7 @@ def extended_euclidean(q, r):
 
     See also the
     `Wikipedia article on the Euclidean algorithm
-    <https://en.wikipedia.org/wiki/Euclidean_algorithm>`_.
+    <https://en.wikipedia.org/wiki/Euclidean_algorithm>`__.
     """
     import pymbolic.traits as traits
 
@@ -138,7 +138,7 @@ def fft(x, sign=1,
     where :math:`z = \exp(-2i\pi\operatorname{sign}/n)` and ``n == len(x)``.
     Works for all positive *n*.
 
-    See also `Wikipedia <http://en.wikipedia.org/wiki/Cooley-Tukey_FFT_algorithm>`_.
+    See also `Wikipedia <https://en.wikipedia.org/wiki/Cooley%E2%80%93Tukey_FFT_algorithm>`__.
     """
 
     # revision 293076305

pymbolic/compiler.py

@@ -30,7 +30,7 @@
 class CompileMapper(StringifyMapper):
     def map_constant(self, expr, enclosing_prec):
         # work around numpy bug #1137 (locale-sensitive repr)
-        # http://projects.scipy.org/numpy/ticket/1137
+        # https://github.com/numpy/numpy/issues/1735
         try:
             import numpy
         except ImportError:

pymbolic/geometric_algebra/__init__.py

@@ -25,7 +25,7 @@
 
 
 __doc__ = """
-See `Wikipedia <https://en.wikipedia.org/wiki/Geometric_algebra>`_ for an idea
+See `Wikipedia <https://en.wikipedia.org/wiki/Geometric_algebra>`__ for an idea
 of what this is.
 
 .. versionadded:: 2013.2
@@ -139,7 +139,7 @@ def permutation_sign(p):
 def bit_count(i):
     """Count the number of set bits in *i*."""
 
-    # nicked from http://wiki.python.org/moin/BitManipulation
+    # nicked from https://wiki.python.org/moin/BitManipulation
 
     count = 0
     while i:
@@ -408,11 +408,11 @@ class MultiVector:
 
         [DFM] L. Dorst, D. Fontijne, and S. Mann, `Geometric Algebra for Computer
         Science: An Object-Oriented Approach to Geometry
-        <https://books.google.com?isbn=0080553109>`_. Morgan Kaufmann, 2010.
+        <https://books.google.com?isbn=0080553109>`__. Morgan Kaufmann, 2010.
 
         [HS] D. Hestenes and G. Sobczyk, `Clifford Algebra to Geometric Calculus: A
         Unified Language for Mathematics and Physics
-        <https://books.google.com?isbn=9027725616>`_. Springer, 1987.
+        <https://books.google.com?isbn=9027725616>`__. Springer, 1987.
 
     The object behaves much like the corresponding :class:`galgebra.mv.Mv`
     object in :mod:`galgebra`, especially with respect to the supported

pymbolic/imperative/utils.py

@@ -43,7 +43,7 @@ def get_dot_dependency_graph(
 
         # deprecated
         use_insn_ids=None,):
-    """Return a string in the `dot <http://graphviz.org/>`_ language depicting
+    """Return a string in the `dot <https://graphviz.org/>`__ language depicting
     dependencies among kernel statements.
 
     :arg statements: A sequence of statements, each of which is stringified by

pymbolic/interop/maxima.py

@@ -32,7 +32,7 @@
 """
 
 # Inspired by similar code in Sage at:
-# http://trac.sagemath.org/sage_trac/browser/sage/interfaces/maxima.py
+# https://github.com/sagemath/sage/blob/master/src/sage/interfaces/maxima.py
 
 import re
 from sys import intern

pymbolic/mapper/constant_converter.py

@@ -24,7 +24,7 @@
 
 
 class ConstantToNumpyConversionMapper(pymbolic.mapper.IdentityMapper):
-    """Because of `this numpy bug <https://github.com/numpy/numpy/issues/9438>`_,
+    """Because of `this numpy bug <https://github.com/numpy/numpy/issues/9438>`__,
     sized :mod:`numpy` number (i.e. ones with definite bit width, such as
     :class:`numpy.complex64`) have a low likelihood of surviving expression
     construction.

pymbolic/mapper/graphviz.py

@@ -28,7 +28,7 @@
 
 
 class GraphvizMapper(WalkMapper):
-    """Produces code for `dot <http://graphviz.org>`_ that yields
+    """Produces code for `dot <https://graphviz.org>`__ that yields
     an expression tree of the traversed expression(s).
 
     .. automethod:: get_dot_code