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set autoapi_add_toctree_entry to True
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docs/api.rst

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docs/conf.py

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@@ -60,7 +60,7 @@
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autoapi_type = 'python'
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autoapi_dirs = ['../src']
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autoapi_options = ['members', 'undoc-members', 'show-inheritance']
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autoapi_add_toctree_entry = False
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autoapi_add_toctree_entry = True
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autoapi_generate_api_docs = True
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autoapi_root = 'api'
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autoapi_file_patterns = ['*.py']

docs/index.rst

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@@ -21,7 +21,6 @@ Project Links: `Github`_ | `PyPI`_
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seeding
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relationships
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examples
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api
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Indices and tables
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==================

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