IDMappingService/.github/workflows/test.yaml at develop · jgi-kbase/IDMappingService · GitHub

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name: ID Mapping Service test

on:
  pull_request:
    types:
    - opened
    - reopened
    - synchronize
    - ready_for_review
  push:
    # run workflow when merging to main or develop
    branches:
      - main
      - master
      - develop

jobs:
  id_mapping_service_container_tests:
    runs-on: ubuntu-latest
    steps:
      - name: Check out GitHub repo
        uses: actions/checkout@v4

      - name: Setup Python
        uses: actions/setup-python@v5
        with:
          python-version: "3.9.19"

      - name: Install dependencies and set up test config
        shell: bash
        run: |
          # set up python dependencies
          pip install pytest requests

          # set up deploy.cfg
          cp -n deploy.cfg.example deploy.cfg
          sed -i "s#^mongo-host.*#mongo-host=mongo#" deploy.cfg
          sed -i "s#^mongo-db.*#mongo-db=idmapping#" deploy.cfg

      - name: Run tests
        shell: bash
        run: |
          sh container_test/run_tests.sh

  id_mapping_service_tests:
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        include:
          - python: '3.9.19'
            mongo: 'mongodb-linux-x86_64-3.6.23'
            wired_tiger: 'false'
          - python: '3.9.19'
            mongo: 'mongodb-linux-x86_64-ubuntu2204-7.0.4'
            wired_tiger: 'true'

    steps:
    - name: Check out GitHub repo
      uses: actions/checkout@v4

    - name: Setup Python
      uses: actions/setup-python@v5
      with:
        python-version: ${{matrix.python}}

    - name: Install dependencies and set up test config
      shell: bash
      run: |

        # install python libraries
        python -m pip install --upgrade pip
        pip install pipenv
        pipenv sync --system --dev

        # set up mongo
        cd ..
        wget -q http://fastdl.mongodb.org/linux/${{matrix.mongo}}.tgz
        tar xfz ${{matrix.mongo}}.tgz
        export MONGOD=`pwd`/${{matrix.mongo}}/bin/mongod
        cd -

        # set up test config
        cp -n test.cfg.example test.cfg
        sed -i "s#^test.temp.dir =.*#test.temp.dir=temp_test_dir#" test.cfg
        sed -i "s#^test.mongo.exe.*#test.mongo.exe=$MONGOD#" test.cfg
        sed -i "s#^test.mongo.wired_tiger.*#test.mongo.wired_tiger=${{matrix.wired_tiger}}#" test.cfg

    - name: Run tests
      shell: bash
      run: |
        HOMEDIR=`pwd`
        PYTHONPATH=$HOMEDIR/src:$PYTHONPATH
        make test

    - name: Upload coverage to Codecov
      uses: codecov/codecov-action@v3
      with:
        token: ${{ secrets.CODECOV_TOKEN }}
        fail_ci_if_error: true