Prefix remapper #456
alinakbasetests.yml
on: pull_request
Check code formatting
3m 44s
Matrix: tests
Annotations
10 errors
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ruff (PTH123):
notebooks/prefix_remapper_investigation.ipynb#L1
notebooks/prefix_remapper_investigation.ipynb:1:1: PTH123 `open()` should be replaced by `Path.open()`
help: Replace with `Path.open()`
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ruff (D103):
notebooks/prefix_remapper_investigation.ipynb#L1
notebooks/prefix_remapper_investigation.ipynb:1:1: D103 Missing docstring in public function
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ruff (SIM118):
notebooks/prefix_remapper_investigation.ipynb#L1
notebooks/prefix_remapper_investigation.ipynb:1:1: SIM118 Use `key in dict` instead of `key in dict.keys()`
help: Remove `.keys()`
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ruff (PTH123):
notebooks/prefix_remapper_investigation.ipynb#L1
notebooks/prefix_remapper_investigation.ipynb:1:1: PTH123 `open()` should be replaced by `Path.open()`
help: Replace with `Path.open()`
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ruff (D103):
notebooks/prefix_remapper_investigation.ipynb#L1
notebooks/prefix_remapper_investigation.ipynb:1:1: D103 Missing docstring in public function
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ruff (PTH123):
notebooks/prefix_remapper_investigation.ipynb#L1
notebooks/prefix_remapper_investigation.ipynb:1:1: PTH123 `open()` should be replaced by `Path.open()`
help: Replace with `Path.open()`
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ruff (D103):
notebooks/prefix_remapper_investigation.ipynb#L1
notebooks/prefix_remapper_investigation.ipynb:1:1: D103 Missing docstring in public function
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ruff (F401):
notebooks/prefix_remapper_investigation.ipynb#L1
notebooks/prefix_remapper_investigation.ipynb:1:1: F401 `gzip` imported but unused
help: Remove unused import: `gzip`
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ruff (I001):
notebooks/prefix_remapper_investigation.ipynb#L1
notebooks/prefix_remapper_investigation.ipynb:1:1: I001 Import block is un-sorted or un-formatted
help: Organize imports
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ruff (I001):
notebooks/pangenome_refseq.py#L14
notebooks/pangenome_refseq.py:14:1: I001 Import block is un-sorted or un-formatted
help: Organize imports
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