Skip to content

return GTF file format for MetaGenome object #196

@Tianhao-Gu

Description

@Tianhao-Gu

is_gtf argument in metagenome_to_gff is not effective

If I read code correctly, for MetaGenome, the export method will return the gff_handle_ref shock file directly and ignore the is_gtf argument.

https://github.com/kbaseapps/GenomeFileUtil/blob/master/lib/GenomeFileUtil/core/GenomeToGFF.py#L66

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions