diff --git a/Cargo.lock b/Cargo.lock
index 0cf47febc3..2c228d8cc7 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -1,5 +1,7 @@
 # This file is automatically @generated by Cargo.
 # It is not intended for manual editing.
+version = 3
+
 [[package]]
 name = "ahash"
 version = "0.4.7"
@@ -12,12 +14,6 @@ version = "1.0.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "cdb031dd78e28731d87d56cc8ffef4a8f36ca26c38fe2de700543e627f8a464a"
 
-[[package]]
-name = "cfg-if"
-version = "0.1.10"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "4785bdd1c96b2a846b2bd7cc02e86b6b3dbf14e7e53446c4f54c92a361040822"
-
 [[package]]
 name = "cfg-if"
 version = "1.0.0"
@@ -36,7 +32,7 @@ version = "0.5.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "dca26ee1f8d361640700bde38b2c37d8c22b3ce2d360e1fc1c74ea4b0aa7d775"
 dependencies = [
- "cfg-if 1.0.0",
+ "cfg-if",
  "crossbeam-utils",
 ]
 
@@ -46,7 +42,7 @@ version = "0.8.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "94af6efb46fef72616855b036a624cf27ba656ffc9be1b9a3c931cfc7749a9a9"
 dependencies = [
- "cfg-if 1.0.0",
+ "cfg-if",
  "crossbeam-epoch",
  "crossbeam-utils",
 ]
@@ -57,7 +53,7 @@ version = "0.9.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "a1aaa739f95311c2c7887a76863f500026092fb1dce0161dab577e559ef3569d"
 dependencies = [
- "cfg-if 1.0.0",
+ "cfg-if",
  "const_fn",
  "crossbeam-utils",
  "lazy_static",
@@ -72,7 +68,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "02d96d1e189ef58269ebe5b97953da3274d83a93af647c2ddd6f9dab28cedb8d"
 dependencies = [
  "autocfg",
- "cfg-if 1.0.0",
+ "cfg-if",
  "lazy_static",
 ]
 
@@ -104,7 +100,7 @@ version = "0.2.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "c9495705279e7140bf035dde1f6e750c162df8b625267cd52cc44e0b156732c8"
 dependencies = [
- "cfg-if 1.0.0",
+ "cfg-if",
  "libc",
  "wasi",
 ]
@@ -159,6 +155,15 @@ dependencies = [
  "proc-macro-hack",
 ]
 
+[[package]]
+name = "indoc"
+version = "1.0.4"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "e7906a9fababaeacb774f72410e497a1d18de916322e33797bb2cd29baa23c9e"
+dependencies = [
+ "unindent",
+]
+
 [[package]]
 name = "indoc-impl"
 version = "0.3.6"
@@ -178,7 +183,7 @@ version = "0.1.9"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "61124eeebbd69b8190558df225adf7e4caafce0d743919e5d6b19652314ec5ec"
 dependencies = [
- "cfg-if 1.0.0",
+ "cfg-if",
 ]
 
 [[package]]
@@ -297,18 +302,23 @@ dependencies = [
 
 [[package]]
 name = "numpy"
-version = "0.12.2"
+version = "0.16.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9fd9e8e652becf4ba6c11803945f8bf463c23f482f704bb33f70ae9d22482d10"
+checksum = "e0b4680aec093ae7b5522c849b3e949de3d92bbca52acdb047fd5be8e3b668db"
 dependencies = [
- "cfg-if 0.1.10",
  "libc",
  "ndarray",
  "num-complex",
  "num-traits",
- "pyo3",
+ "pyo3 0.16.1",
 ]
 
+[[package]]
+name = "once_cell"
+version = "1.10.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "87f3e037eac156d1775da914196f0f37741a274155e34a0b7e427c35d2a2ecb9"
+
 [[package]]
 name = "parking_lot"
 version = "0.11.1"
@@ -326,7 +336,7 @@ version = "0.8.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "9ccb628cad4f84851442432c60ad8e1f607e29752d0bf072cbd0baf28aa34272"
 dependencies = [
- "cfg-if 1.0.0",
+ "cfg-if",
  "instant",
  "libc",
  "redox_syscall",
@@ -392,7 +402,7 @@ checksum = "bf6bbbe8f70d179260b3728e5d04eb012f4f0c7988e58c11433dd689cecaa72e"
 dependencies = [
  "ctor",
  "hashbrown",
- "indoc",
+ "indoc 0.3.6",
  "inventory",
  "libc",
  "parking_lot",
@@ -401,6 +411,31 @@ dependencies = [
  "unindent",
 ]
 
+[[package]]
+name = "pyo3"
+version = "0.16.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "c00e5e97bb258ac0fcea67da5e845aae5f7e6fb4f723ec94a503a6d0a541ccb7"
+dependencies = [
+ "cfg-if",
+ "indoc 1.0.4",
+ "libc",
+ "parking_lot",
+ "pyo3-build-config",
+ "pyo3-ffi",
+ "pyo3-macros",
+ "unindent",
+]
+
+[[package]]
+name = "pyo3-build-config"
+version = "0.16.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "f61cb87bf5c9503fa0e7f38bcd311b31993328a5e29f3507dfbf763c8ccd37f4"
+dependencies = [
+ "once_cell",
+]
+
 [[package]]
 name = "pyo3-derive-backend"
 version = "0.12.4"
@@ -412,6 +447,40 @@ dependencies = [
  "syn",
 ]
 
+[[package]]
+name = "pyo3-ffi"
+version = "0.16.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "5dd4b0b76ae07ca5a7b0527a75afc9f47744d14f4f3576bdf66a9a2420b5c54d"
+dependencies = [
+ "libc",
+ "pyo3-build-config",
+]
+
+[[package]]
+name = "pyo3-macros"
+version = "0.16.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "a845f73eda2aa27d35b3840e2c6f0c9447347cdb49954552f09ae7b1f432a3d9"
+dependencies = [
+ "proc-macro2",
+ "pyo3-macros-backend",
+ "quote",
+ "syn",
+]
+
+[[package]]
+name = "pyo3-macros-backend"
+version = "0.16.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "4e72ef79ca96c2dcb66d9b22f149400ac6c6b32ab468398ebbcb145d72f80c00"
+dependencies = [
+ "proc-macro2",
+ "pyo3-build-config",
+ "quote",
+ "syn",
+]
+
 [[package]]
 name = "pyo3cls"
 version = "0.12.4"
@@ -527,7 +596,7 @@ dependencies = [
  "ndarray",
  "numpy",
  "petgraph",
- "pyo3",
+ "pyo3 0.12.4",
  "rand",
  "rand_pcg",
  "rayon",
@@ -564,9 +633,9 @@ checksum = "f7fe0bb3479651439c9112f72b6c505038574c9fbb575ed1bf3b797fa39dd564"
 
 [[package]]
 name = "unindent"
-version = "0.1.7"
+version = "0.1.8"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f14ee04d9415b52b3aeab06258a3f07093182b88ba0f9b8d203f211a7a7d41c7"
+checksum = "514672a55d7380da379785a4d70ca8386c8883ff7eaae877be4d2081cebe73d8"
 
 [[package]]
 name = "wasi"
diff --git a/Cargo.toml b/Cargo.toml
index 6fa1831bc2..e97f2d8508 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -19,7 +19,7 @@ crate-type = ["cdylib"]
 [dependencies]
 petgraph = "0.5.1"
 fixedbitset = "0.2.0"
-numpy = "0.12.1"
+numpy = "0.16.1"
 rand = "0.8"
 rand_pcg = "0.3"
 rayon = "1.5"