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README.md

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@@ -25,10 +25,11 @@ pip install git+https://github.com/ktroule/sctools.git
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- **calculate_pca**: (to be tested). calculates the PCA on the adata without scaling the gene expression.
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- **load_markers**: load set of expression markers.
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- **pseudobulk_matrix**: creates a pseudobulk matrix by aggregating gene counts per user-defined group.
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- **clean_markers**: removes from a dictionary those genes not present in the adata.
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### Notes
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To use R with jupyter notebooks you might need to install the following pacakges:
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- rpy2==3.4.2
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- anndata2ri==1.0.6
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- anndata2ri==1.0.6

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