From 6702300883359247b813a2baa16ec30c4e4a172b Mon Sep 17 00:00:00 2001
From: isaac hershenson <ihershenson@hmc.edu>
Date: Tue, 27 Aug 2024 17:20:45 -0700
Subject: [PATCH 01/21] wip

---
 .github/workflows/link_check.yml | 87 ++++++++++++++++++++++++++++++++
 docs/docs/concepts/low_level.md  |  6 +--
 2 files changed, 90 insertions(+), 3 deletions(-)
 create mode 100644 .github/workflows/link_check.yml

diff --git a/.github/workflows/link_check.yml b/.github/workflows/link_check.yml
new file mode 100644
index 00000000..f8b1f91c
--- /dev/null
+++ b/.github/workflows/link_check.yml
@@ -0,0 +1,87 @@
+name: Check Docs & Links
+
+on:
+  pull_request:
+    branches:
+      - main
+  push:
+    branches:
+      - main
+  schedule:
+    - cron: "0 5 * * *"
+  workflow_dispatch:
+
+env:
+  POETRY_VERSION: "1.7.1"
+
+jobs:
+  markdown-link-check:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - name: Check links in Markdown files
+        uses: gaurav-nelson/github-action-markdown-link-check@v1
+        with:
+          folder-path: "examples/,docs/"
+          check-modified-files-only: ${{ github.event_name != 'schedule' }}
+          file-path: "./README.md"
+          config-file: "./.markdown-link-check.config.json"
+
+  notebook-link-check:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+      - name: Set up Python 3.x + Poetry ${{ env.POETRY_VERSION }}
+        uses: "./.github/actions/poetry_setup"
+        with:
+          python-version: "3.11"
+          poetry-version: ${{ env.POETRY_VERSION }}
+          cache-key: core
+
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          poetry install --with docs
+          poetry run pip install -U pytest pytest-check-links langsmith langchain GitPython
+
+      - name: Check links in notebooks
+        env:
+          LANGCHAIN_API_KEY: test
+        run: |
+          if [ "${{ github.event_name }}" == "schedule" ] || [ "${{ github.event_name }}" == "workflow_dispatch" ] || ([ "${{ github.event_name }}" == "push" ] && [ "${{ github.ref }}" == "refs/heads/main" ]); then
+            echo "Running link check on all notebooks in examples directory..."
+            poetry run pytest -v --check-links-ignore "https://(api|web)\.smith\.langchain\.com/.*" --check-links-ignore "https://x.com/.*" --check-links examples
+          else
+            echo "Fetching changes from origin/main..."
+            git fetch origin main
+            echo "Checking for changed notebook files..."
+            CHANGED_FILES=$(git diff --name-only --diff-filter=d origin/main | grep '\.ipynb$' || true)
+            echo "Changed files: ${CHANGED_FILES}"
+            if [ -n "${CHANGED_FILES}" ]; then
+              echo "Running link check on changed notebook files..."
+              poetry run pytest -v --check-links-ignore "https://(api|web)\.smith\.langchain\.com/.*" --check-links-ignore "https://x.com/.*" --check-links ${CHANGED_FILES} || ([ $? = 5 ] && exit 0 || exit $?)
+            else
+              echo "No notebook files changed."
+            fi
+          fi
+  check-readmes-synced:
+    # This checks that the repo README.md is identical to the libs/langgraph/README.md
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 1
+
+      - name: Check README.md is in sync
+        run: |
+            if ! diff -q README.md libs/langgraph/README.md >/dev/null; then
+            echo "README.md is out of sync with libs/langgraph/README.md"
+            diff -C 3 README.md libs/langgraph/README.md
+            exit 1
+            fi
\ No newline at end of file
diff --git a/docs/docs/concepts/low_level.md b/docs/docs/concepts/low_level.md
index 29461270..340946b3 100644
--- a/docs/docs/concepts/low_level.md
+++ b/docs/docs/concepts/low_level.md
@@ -4,7 +4,7 @@
 
 At its core, LangGraph models agent workflows as graphs. You define the behavior of your agents using three key components:
 
-1. [`State`](#state): A shared data structure that represents the current snapshot of your application. It is represented by an [`annotations`](/langgraphjs/reference/functions/langgraph.Annotation-1.html) object.
+1. [`State`](#state): A shared data structure that represents the current snapshot of your application. It is represented by an [`annotations`](/langgraphjs/reference/modules/langgraph.Annotation.html) object.
 
 2. [`Nodes`](#nodes): JavaScript/TypeScript functions that encode the logic of your agents. They receive the current `State` as input, perform some computation or side-effect, and return an updated `State`.
 
@@ -40,11 +40,11 @@ You **MUST** compile your graph before you can use it.
 
 ## State
 
-The first thing you do when you define a graph is define the `State` of the graph. The `State` consists of the [schema of the graph](#schema) as well as [`reducer` functions](#reducers) which specify how to apply updates to the state. The schema of the `State` will be the input schema to all `Nodes` and `Edges` in the graph, and should be defined using an [`Annotation`](/langgraphjs/reference/functions/langgraph.Annotation-1.html) object. All `Nodes` will emit updates to the `State` which are then applied using the specified `reducer` function.
+The first thing you do when you define a graph is define the `State` of the graph. The `State` consists of the [schema of the graph](#schema) as well as [`reducer` functions](#reducers) which specify how to apply updates to the state. The schema of the `State` will be the input schema to all `Nodes` and `Edges` in the graph, and should be defined using an [`Annotation`](/langgraphjs/reference/modules/langgraph.Annotation.html) object. All `Nodes` will emit updates to the `State` which are then applied using the specified `reducer` function.
 
 ### Schema
 
-The way to specify the schema of a graph is by defining an [`Annotation`](/langgraphjs/reference/functions/langgraph.Annotation-1.html) object, where each key is an item in the state.
+The way to specify the schema of a graph is by defining an [`Annotation`](/anggraphjs/reference/modules/langgraph.Annotation.html) object, where each key is an item in the state.
 
 ### Reducers
 

From 54dd6c657c8d7af5685336ebe0f47dfc42e0baad Mon Sep 17 00:00:00 2001
From: isaac hershenson <ihershenson@hmc.edu>
Date: Tue, 27 Aug 2024 17:25:07 -0700
Subject: [PATCH 02/21] edits

---
 .markdown-link-check.config.json | 4 ++++
 1 file changed, 4 insertions(+)
 create mode 100644 .markdown-link-check.config.json

diff --git a/.markdown-link-check.config.json b/.markdown-link-check.config.json
new file mode 100644
index 00000000..030951e4
--- /dev/null
+++ b/.markdown-link-check.config.json
@@ -0,0 +1,4 @@
+{
+  "aliveStatusCodes": [200, 206, 402],
+  "ignorePatterns": ["*dcbadge.vercel.app*"]
+}

From 29821fd29c442d8b2b56139d8743f3455ba21422 Mon Sep 17 00:00:00 2001
From: isaac hershenson <ihershenson@hmc.edu>
Date: Tue, 27 Aug 2024 17:27:49 -0700
Subject: [PATCH 03/21] changes!

---
 .github/actions/poetry_setup/action.yml | 88 +++++++++++++++++++++++++
 1 file changed, 88 insertions(+)
 create mode 100644 .github/actions/poetry_setup/action.yml

diff --git a/.github/actions/poetry_setup/action.yml b/.github/actions/poetry_setup/action.yml
new file mode 100644
index 00000000..df04e1e7
--- /dev/null
+++ b/.github/actions/poetry_setup/action.yml
@@ -0,0 +1,88 @@
+# An action for setting up poetry install with caching.
+# Using a custom action since the default action does not
+# take poetry install groups into account.
+# Action code from:
+# https://github.com/actions/setup-python/issues/505#issuecomment-1273013236
+name: poetry-install-with-caching
+description: Poetry install with support for caching of dependency groups.
+
+inputs:
+  python-version:
+    description: Python version, supporting MAJOR.MINOR only
+    required: true
+
+  poetry-version:
+    description: Poetry version
+    required: true
+
+  cache-key:
+    description: Cache key to use for manual handling of caching
+    required: true
+
+runs:
+  using: composite
+  steps:
+    - uses: actions/setup-python@v5
+      name: Setup python ${{ inputs.python-version }}
+      id: setup-python
+      with:
+        python-version: ${{ inputs.python-version }}
+
+    - uses: actions/cache@v3
+      id: cache-bin-poetry
+      name: Cache Poetry binary - Python ${{ inputs.python-version }}
+      env:
+        SEGMENT_DOWNLOAD_TIMEOUT_MIN: "1"
+      with:
+        path: |
+          /opt/pipx/venvs/poetry
+        # This step caches the poetry installation, so make sure it's keyed on the poetry version as well.
+        key: bin-poetry-${{ runner.os }}-${{ runner.arch }}-py-${{ inputs.python-version }}-${{ inputs.poetry-version }}
+
+    - name: Refresh shell hashtable and fixup softlinks
+      if: steps.cache-bin-poetry.outputs.cache-hit == 'true'
+      shell: bash
+      env:
+        POETRY_VERSION: ${{ inputs.poetry-version }}
+        PYTHON_VERSION: ${{ inputs.python-version }}
+      run: |
+        set -eux
+
+        # Refresh the shell hashtable, to ensure correct `which` output.
+        hash -r
+
+        # `actions/cache@v3` doesn't always seem able to correctly unpack softlinks.
+        # Delete and recreate the softlinks pipx expects to have.
+        rm /opt/pipx/venvs/poetry/bin/python
+        cd /opt/pipx/venvs/poetry/bin
+        ln -s "$(which "python$PYTHON_VERSION")" python
+        chmod +x python
+        cd /opt/pipx_bin/
+        ln -s /opt/pipx/venvs/poetry/bin/poetry poetry
+        chmod +x poetry
+
+        # Ensure everything got set up correctly.
+        /opt/pipx/venvs/poetry/bin/python --version
+        /opt/pipx_bin/poetry --version
+
+    - name: Install poetry
+      if: steps.cache-bin-poetry.outputs.cache-hit != 'true'
+      shell: bash
+      env:
+        POETRY_VERSION: ${{ inputs.poetry-version }}
+        PYTHON_VERSION: ${{ inputs.python-version }}
+      # Install poetry using the python version installed by setup-python step.
+      run: pipx install "poetry==$POETRY_VERSION" --python '${{ steps.setup-python.outputs.python-path }}' --verbose
+
+    - name: Restore pip and poetry cached dependencies
+      uses: actions/cache@v3
+      env:
+        SEGMENT_DOWNLOAD_TIMEOUT_MIN: "4"
+      with:
+        path: |
+          ~/.cache/pip
+          ~/.cache/pypoetry/virtualenvs
+          ~/.cache/pypoetry/cache
+          ~/.cache/pypoetry/artifacts
+          ./.venv
+        key: py-deps-${{ runner.os }}-${{ runner.arch }}-py-${{ inputs.python-version }}-poetry-${{ inputs.poetry-version }}-${{ inputs.cache-key }}-${{ hashFiles('./poetry.lock') }}

From ce3b2700eaab8dcc7f86ec0c360453ef3929534d Mon Sep 17 00:00:00 2001
From: isaac hershenson <ihershenson@hmc.edu>
Date: Tue, 27 Aug 2024 17:34:19 -0700
Subject: [PATCH 04/21] x

---
 .github/actions/poetry_setup/action.yml | 88 -------------------------
 .github/workflows/link_check.yml        | 20 +++---
 2 files changed, 9 insertions(+), 99 deletions(-)
 delete mode 100644 .github/actions/poetry_setup/action.yml

diff --git a/.github/actions/poetry_setup/action.yml b/.github/actions/poetry_setup/action.yml
deleted file mode 100644
index df04e1e7..00000000
--- a/.github/actions/poetry_setup/action.yml
+++ /dev/null
@@ -1,88 +0,0 @@
-# An action for setting up poetry install with caching.
-# Using a custom action since the default action does not
-# take poetry install groups into account.
-# Action code from:
-# https://github.com/actions/setup-python/issues/505#issuecomment-1273013236
-name: poetry-install-with-caching
-description: Poetry install with support for caching of dependency groups.
-
-inputs:
-  python-version:
-    description: Python version, supporting MAJOR.MINOR only
-    required: true
-
-  poetry-version:
-    description: Poetry version
-    required: true
-
-  cache-key:
-    description: Cache key to use for manual handling of caching
-    required: true
-
-runs:
-  using: composite
-  steps:
-    - uses: actions/setup-python@v5
-      name: Setup python ${{ inputs.python-version }}
-      id: setup-python
-      with:
-        python-version: ${{ inputs.python-version }}
-
-    - uses: actions/cache@v3
-      id: cache-bin-poetry
-      name: Cache Poetry binary - Python ${{ inputs.python-version }}
-      env:
-        SEGMENT_DOWNLOAD_TIMEOUT_MIN: "1"
-      with:
-        path: |
-          /opt/pipx/venvs/poetry
-        # This step caches the poetry installation, so make sure it's keyed on the poetry version as well.
-        key: bin-poetry-${{ runner.os }}-${{ runner.arch }}-py-${{ inputs.python-version }}-${{ inputs.poetry-version }}
-
-    - name: Refresh shell hashtable and fixup softlinks
-      if: steps.cache-bin-poetry.outputs.cache-hit == 'true'
-      shell: bash
-      env:
-        POETRY_VERSION: ${{ inputs.poetry-version }}
-        PYTHON_VERSION: ${{ inputs.python-version }}
-      run: |
-        set -eux
-
-        # Refresh the shell hashtable, to ensure correct `which` output.
-        hash -r
-
-        # `actions/cache@v3` doesn't always seem able to correctly unpack softlinks.
-        # Delete and recreate the softlinks pipx expects to have.
-        rm /opt/pipx/venvs/poetry/bin/python
-        cd /opt/pipx/venvs/poetry/bin
-        ln -s "$(which "python$PYTHON_VERSION")" python
-        chmod +x python
-        cd /opt/pipx_bin/
-        ln -s /opt/pipx/venvs/poetry/bin/poetry poetry
-        chmod +x poetry
-
-        # Ensure everything got set up correctly.
-        /opt/pipx/venvs/poetry/bin/python --version
-        /opt/pipx_bin/poetry --version
-
-    - name: Install poetry
-      if: steps.cache-bin-poetry.outputs.cache-hit != 'true'
-      shell: bash
-      env:
-        POETRY_VERSION: ${{ inputs.poetry-version }}
-        PYTHON_VERSION: ${{ inputs.python-version }}
-      # Install poetry using the python version installed by setup-python step.
-      run: pipx install "poetry==$POETRY_VERSION" --python '${{ steps.setup-python.outputs.python-path }}' --verbose
-
-    - name: Restore pip and poetry cached dependencies
-      uses: actions/cache@v3
-      env:
-        SEGMENT_DOWNLOAD_TIMEOUT_MIN: "4"
-      with:
-        path: |
-          ~/.cache/pip
-          ~/.cache/pypoetry/virtualenvs
-          ~/.cache/pypoetry/cache
-          ~/.cache/pypoetry/artifacts
-          ./.venv
-        key: py-deps-${{ runner.os }}-${{ runner.arch }}-py-${{ inputs.python-version }}-poetry-${{ inputs.poetry-version }}-${{ inputs.cache-key }}-${{ hashFiles('./poetry.lock') }}
diff --git a/.github/workflows/link_check.yml b/.github/workflows/link_check.yml
index f8b1f91c..2b828522 100644
--- a/.github/workflows/link_check.yml
+++ b/.github/workflows/link_check.yml
@@ -36,18 +36,16 @@ jobs:
     steps:
       - name: Checkout code
         uses: actions/checkout@v4
-      - name: Set up Python 3.x + Poetry ${{ env.POETRY_VERSION }}
-        uses: "./.github/actions/poetry_setup"
-        with:
-          python-version: "3.11"
-          poetry-version: ${{ env.POETRY_VERSION }}
-          cache-key: core
 
+      - name: Set up Node.js
+        uses: actions/setup-node@v3
+        with:
+          node-version: '16.x'
+          cache: 'yarn'
+      
       - name: Install dependencies
         run: |
-          python -m pip install --upgrade pip
-          poetry install --with docs
-          poetry run pip install -U pytest pytest-check-links langsmith langchain GitPython
+          yarn install --frozen-lockfile
 
       - name: Check links in notebooks
         env:
@@ -55,7 +53,7 @@ jobs:
         run: |
           if [ "${{ github.event_name }}" == "schedule" ] || [ "${{ github.event_name }}" == "workflow_dispatch" ] || ([ "${{ github.event_name }}" == "push" ] && [ "${{ github.ref }}" == "refs/heads/main" ]); then
             echo "Running link check on all notebooks in examples directory..."
-            poetry run pytest -v --check-links-ignore "https://(api|web)\.smith\.langchain\.com/.*" --check-links-ignore "https://x.com/.*" --check-links examples
+            yarn run pytest -v --check-links-ignore "https://(api|web)\.smith\.langchain\.com/.*" --check-links-ignore "https://x.com/.*" --check-links examples
           else
             echo "Fetching changes from origin/main..."
             git fetch origin main
@@ -64,7 +62,7 @@ jobs:
             echo "Changed files: ${CHANGED_FILES}"
             if [ -n "${CHANGED_FILES}" ]; then
               echo "Running link check on changed notebook files..."
-              poetry run pytest -v --check-links-ignore "https://(api|web)\.smith\.langchain\.com/.*" --check-links-ignore "https://x.com/.*" --check-links ${CHANGED_FILES} || ([ $? = 5 ] && exit 0 || exit $?)
+              yarn run pytest -v --check-links-ignore "https://(api|web)\.smith\.langchain\.com/.*" --check-links-ignore "https://x.com/.*" --check-links ${CHANGED_FILES} || ([ $? = 5 ] && exit 0 || exit $?)
             else
               echo "No notebook files changed."
             fi

From 15ba5767940e663f2cd1e09f5ac1306a756b7ab3 Mon Sep 17 00:00:00 2001
From: isaac hershenson <ihershenson@hmc.edu>
Date: Tue, 27 Aug 2024 17:57:04 -0700
Subject: [PATCH 05/21] link

---
 docs/docs/concepts/low_level.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/docs/docs/concepts/low_level.md b/docs/docs/concepts/low_level.md
index 340946b3..296151eb 100644
--- a/docs/docs/concepts/low_level.md
+++ b/docs/docs/concepts/low_level.md
@@ -44,7 +44,7 @@ The first thing you do when you define a graph is define the `State` of the grap
 
 ### Schema
 
-The way to specify the schema of a graph is by defining an [`Annotation`](/anggraphjs/reference/modules/langgraph.Annotation.html) object, where each key is an item in the state.
+The way to specify the schema of a graph is by defining an [`Annotation`](/langgraphjs/reference/modules/langgraph.Annotation.html) object, where each key is an item in the state.
 
 ### Reducers
 

From cdeb61e675a8a340b870f2af0283020d8ce7505f Mon Sep 17 00:00:00 2001
From: isaac hershenson <ihershenson@hmc.edu>
Date: Wed, 28 Aug 2024 10:27:01 -0700
Subject: [PATCH 06/21] x

---
 docs/docs/concepts/low_level.md | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/docs/docs/concepts/low_level.md b/docs/docs/concepts/low_level.md
index 296151eb..29461270 100644
--- a/docs/docs/concepts/low_level.md
+++ b/docs/docs/concepts/low_level.md
@@ -4,7 +4,7 @@
 
 At its core, LangGraph models agent workflows as graphs. You define the behavior of your agents using three key components:
 
-1. [`State`](#state): A shared data structure that represents the current snapshot of your application. It is represented by an [`annotations`](/langgraphjs/reference/modules/langgraph.Annotation.html) object.
+1. [`State`](#state): A shared data structure that represents the current snapshot of your application. It is represented by an [`annotations`](/langgraphjs/reference/functions/langgraph.Annotation-1.html) object.
 
 2. [`Nodes`](#nodes): JavaScript/TypeScript functions that encode the logic of your agents. They receive the current `State` as input, perform some computation or side-effect, and return an updated `State`.
 
@@ -40,11 +40,11 @@ You **MUST** compile your graph before you can use it.
 
 ## State
 
-The first thing you do when you define a graph is define the `State` of the graph. The `State` consists of the [schema of the graph](#schema) as well as [`reducer` functions](#reducers) which specify how to apply updates to the state. The schema of the `State` will be the input schema to all `Nodes` and `Edges` in the graph, and should be defined using an [`Annotation`](/langgraphjs/reference/modules/langgraph.Annotation.html) object. All `Nodes` will emit updates to the `State` which are then applied using the specified `reducer` function.
+The first thing you do when you define a graph is define the `State` of the graph. The `State` consists of the [schema of the graph](#schema) as well as [`reducer` functions](#reducers) which specify how to apply updates to the state. The schema of the `State` will be the input schema to all `Nodes` and `Edges` in the graph, and should be defined using an [`Annotation`](/langgraphjs/reference/functions/langgraph.Annotation-1.html) object. All `Nodes` will emit updates to the `State` which are then applied using the specified `reducer` function.
 
 ### Schema
 
-The way to specify the schema of a graph is by defining an [`Annotation`](/langgraphjs/reference/modules/langgraph.Annotation.html) object, where each key is an item in the state.
+The way to specify the schema of a graph is by defining an [`Annotation`](/langgraphjs/reference/functions/langgraph.Annotation-1.html) object, where each key is an item in the state.
 
 ### Reducers
 

From fc9155ee6789b86e7f324fcc3fc51450462de0f2 Mon Sep 17 00:00:00 2001
From: isaac hershenson <ihershenson@hmc.edu>
Date: Wed, 28 Aug 2024 20:19:47 -0700
Subject: [PATCH 07/21] x

---
 .github/workflows/link_check.yml | 50 +++++++++-----------------------
 package.json                     |  3 +-
 2 files changed, 16 insertions(+), 37 deletions(-)

diff --git a/.github/workflows/link_check.yml b/.github/workflows/link_check.yml
index 2b828522..a88612d4 100644
--- a/.github/workflows/link_check.yml
+++ b/.github/workflows/link_check.yml
@@ -1,12 +1,11 @@
 name: Check Docs & Links
 
 on:
-  pull_request:
-    branches:
-      - main
   push:
-    branches:
-      - main
+    branches: ["main"]
+  pull_request:
+    paths:
+      - '**.ipynb'
   schedule:
     - cron: "0 5 * * *"
   workflow_dispatch:
@@ -51,35 +50,14 @@ jobs:
         env:
           LANGCHAIN_API_KEY: test
         run: |
-          if [ "${{ github.event_name }}" == "schedule" ] || [ "${{ github.event_name }}" == "workflow_dispatch" ] || ([ "${{ github.event_name }}" == "push" ] && [ "${{ github.ref }}" == "refs/heads/main" ]); then
-            echo "Running link check on all notebooks in examples directory..."
-            yarn run pytest -v --check-links-ignore "https://(api|web)\.smith\.langchain\.com/.*" --check-links-ignore "https://x.com/.*" --check-links examples
+          echo "Fetching changes from origin/main..."
+          git fetch origin main
+          echo "Checking for changed notebook files..."
+          CHANGED_FILES=$(git diff --name-only --diff-filter=d origin/main | grep '\.ipynb$' || true)
+          echo "Changed files: ${CHANGED_FILES}"
+          if [ -n "${CHANGED_FILES}" ]; then
+            echo "Running link check on changed notebook files..."
+            yarn run pytest -v --check-links-ignore "https://(api|web)\.smith\.langchain\.com/.*" --check-links-ignore "https://x.com/.*" --check-links ${CHANGED_FILES} || ([ $? = 5 ] && exit 0 || exit $?)
           else
-            echo "Fetching changes from origin/main..."
-            git fetch origin main
-            echo "Checking for changed notebook files..."
-            CHANGED_FILES=$(git diff --name-only --diff-filter=d origin/main | grep '\.ipynb$' || true)
-            echo "Changed files: ${CHANGED_FILES}"
-            if [ -n "${CHANGED_FILES}" ]; then
-              echo "Running link check on changed notebook files..."
-              yarn run pytest -v --check-links-ignore "https://(api|web)\.smith\.langchain\.com/.*" --check-links-ignore "https://x.com/.*" --check-links ${CHANGED_FILES} || ([ $? = 5 ] && exit 0 || exit $?)
-            else
-              echo "No notebook files changed."
-            fi
-          fi
-  check-readmes-synced:
-    # This checks that the repo README.md is identical to the libs/langgraph/README.md
-    runs-on: ubuntu-latest
-    steps:
-      - name: Checkout code
-        uses: actions/checkout@v4
-        with:
-          fetch-depth: 1
-
-      - name: Check README.md is in sync
-        run: |
-            if ! diff -q README.md libs/langgraph/README.md >/dev/null; then
-            echo "README.md is out of sync with libs/langgraph/README.md"
-            diff -C 3 README.md libs/langgraph/README.md
-            exit 1
-            fi
\ No newline at end of file
+            echo "No notebook files changed."
+          fi
\ No newline at end of file
diff --git a/package.json b/package.json
index 99a3ca72..da23814c 100644
--- a/package.json
+++ b/package.json
@@ -28,7 +28,8 @@
     "test:exports:docker": "docker compose -f environment_tests/docker-compose.yml up --force-recreate",
     "format": "turbo run format",
     "format:check": "turbo run format:check",
-    "release": "node scripts/release_workspace.cjs --workspace"
+    "release": "node scripts/release_workspace.cjs --workspace",
+    "pytest": "pytest"
   },
   "author": "LangChain",
   "license": "MIT",

From e226b7fc801806785d368df30eca3243fa6f9d1c Mon Sep 17 00:00:00 2001
From: isaac hershenson <ihershenson@hmc.edu>
Date: Wed, 28 Aug 2024 20:22:58 -0700
Subject: [PATCH 08/21] messing with notebook

---
 examples/how-tos/breakpoints.ipynb | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/examples/how-tos/breakpoints.ipynb b/examples/how-tos/breakpoints.ipynb
index a41177d4..57641686 100644
--- a/examples/how-tos/breakpoints.ipynb
+++ b/examples/how-tos/breakpoints.ipynb
@@ -58,7 +58,7 @@
     "\n",
     "Below, we do two things:\n",
     "\n",
-    "1) We specify the [breakpoint](https://langchain-ai.github.io/langgraph/concepts/low_level/#breakpoints) using `interruptBefore` the specified step.\n",
+    "1) We specify the [breakpoint](https://langchain-ai.github.io/langgraph/concepts/low_level/#breakpoints2) using `interruptBefore` the specified step.\n",
     "\n",
     "2) We set up a [checkpointer](https://langchain-ai.github.io/langgraphjs/concepts/#checkpoints) to save the state of the graph."
    ]

From c1a7ac83c772891ed19826cedee2caa3803f8fc3 Mon Sep 17 00:00:00 2001
From: isaac hershenson <ihershenson@hmc.edu>
Date: Wed, 28 Aug 2024 21:09:13 -0700
Subject: [PATCH 09/21] x

---
 .github/workflows/link_check.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/link_check.yml b/.github/workflows/link_check.yml
index a88612d4..03affab0 100644
--- a/.github/workflows/link_check.yml
+++ b/.github/workflows/link_check.yml
@@ -57,6 +57,7 @@ jobs:
           echo "Changed files: ${CHANGED_FILES}"
           if [ -n "${CHANGED_FILES}" ]; then
             echo "Running link check on changed notebook files..."
+            yarn add pytest
             yarn run pytest -v --check-links-ignore "https://(api|web)\.smith\.langchain\.com/.*" --check-links-ignore "https://x.com/.*" --check-links ${CHANGED_FILES} || ([ $? = 5 ] && exit 0 || exit $?)
           else
             echo "No notebook files changed."

From cc8ec4c15b0a29a0d4158ecb276ad352b19c2822 Mon Sep 17 00:00:00 2001
From: isaac hershenson <ihershenson@hmc.edu>
Date: Wed, 28 Aug 2024 21:38:36 -0700
Subject: [PATCH 10/21] x

---
 .github/workflows/link_check.yml | 19 +++-----
 package.json                     |  5 ++-
 scripts/check-link.js            | 75 ++++++++++++++++++++++++++++++++
 3 files changed, 84 insertions(+), 15 deletions(-)
 create mode 100644 scripts/check-link.js

diff --git a/.github/workflows/link_check.yml b/.github/workflows/link_check.yml
index 03affab0..4a910fff 100644
--- a/.github/workflows/link_check.yml
+++ b/.github/workflows/link_check.yml
@@ -46,19 +46,12 @@ jobs:
         run: |
           yarn install --frozen-lockfile
 
+      - name: Get changed files
+        id: changed-files
+        uses: tj-actions/changed-files@v35
+
       - name: Check links in notebooks
         env:
-          LANGCHAIN_API_KEY: test
+          CHANGED_FILES: ${{ steps.changed-files.outputs.all_changed_files }}
         run: |
-          echo "Fetching changes from origin/main..."
-          git fetch origin main
-          echo "Checking for changed notebook files..."
-          CHANGED_FILES=$(git diff --name-only --diff-filter=d origin/main | grep '\.ipynb$' || true)
-          echo "Changed files: ${CHANGED_FILES}"
-          if [ -n "${CHANGED_FILES}" ]; then
-            echo "Running link check on changed notebook files..."
-            yarn add pytest
-            yarn run pytest -v --check-links-ignore "https://(api|web)\.smith\.langchain\.com/.*" --check-links-ignore "https://x.com/.*" --check-links ${CHANGED_FILES} || ([ $? = 5 ] && exit 0 || exit $?)
-          else
-            echo "No notebook files changed."
-          fi
\ No newline at end of file
+          yarn check-links
\ No newline at end of file
diff --git a/package.json b/package.json
index da23814c..8467f7e5 100644
--- a/package.json
+++ b/package.json
@@ -29,7 +29,7 @@
     "format": "turbo run format",
     "format:check": "turbo run format:check",
     "release": "node scripts/release_workspace.cjs --workspace",
-    "pytest": "pytest"
+    "check-links": "node scripts/check-links.js"
   },
   "author": "LangChain",
   "license": "MIT",
@@ -49,7 +49,8 @@
     "tsx": "^4.7.0",
     "turbo": "canary",
     "typedoc": "^0.25.13",
-    "typescript": "^4.9.5 || ^5.4.5"
+    "typescript": "^4.9.5 || ^5.4.5",
+    "markdown-link-check": "^3.10.3"
   },
   "resolutions": {
     "cheerio": "^1.0.0-rc.12",
diff --git a/scripts/check-link.js b/scripts/check-link.js
new file mode 100644
index 00000000..f3312da1
--- /dev/null
+++ b/scripts/check-link.js
@@ -0,0 +1,75 @@
+const { exec } = require('child_process');
+const fs = require('fs');
+const path = require('path');
+const markdownLinkCheck = require('markdown-link-check');
+
+const ignoredUrls = [
+  'https://(api|web)\\.smith\\.langchain\\.com/.*',
+  'https://x\\.com/.*'
+];
+
+function convertNotebookToMarkdown(filePath) {
+  return new Promise((resolve, reject) => {
+    const outputPath = filePath.replace('.ipynb', '.md');
+    exec(`jupyter nbconvert --to markdown "${filePath}" --output "${outputPath}"`, (error) => {
+      if (error) {
+        reject(error);
+      } else {
+        resolve(outputPath);
+      }
+    });
+  });
+}
+
+function checkLinks(filePath) {
+  return new Promise((resolve, reject) => {
+    const markdown = fs.readFileSync(filePath, 'utf8');
+    markdownLinkCheck(markdown, {
+      ignorePatterns: ignoredUrls,
+      baseUrl: 'https://github.com', // Adjust this if needed
+      httpHeaders: [
+        {
+          urls: ['https://github.com'],
+          headers: {
+            'User-Agent': 'Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/93.0.4577.63 Safari/537.36'
+          }
+        }
+      ]
+    }, (err, results) => {
+      if (err) {
+        reject(err);
+      } else {
+        const brokenLinks = results.filter(result => result.status === 'dead');
+        resolve(brokenLinks);
+      }
+    });
+  });
+}
+
+async function main() {
+  const changedFiles = process.env.CHANGED_FILES.split(' ');
+  const notebookFiles = changedFiles.filter(file => path.extname(file) === '.ipynb');
+
+  for (const file of notebookFiles) {
+    try {
+      const markdownFile = await convertNotebookToMarkdown(file);
+      const brokenLinks = await checkLinks(markdownFile);
+
+      if (brokenLinks.length > 0) {
+        console.error(`Broken links found in ${file}:`);
+        brokenLinks.forEach(link => console.error(`- ${link.link}: ${link.statusCode}`));
+        process.exit(1);
+      } else {
+        console.log(`No broken links found in ${file}`);
+      }
+
+      // Clean up the temporary markdown file
+      fs.unlinkSync(markdownFile);
+    } catch (error) {
+      console.error(`Error processing ${file}:`, error);
+      process.exit(1);
+    }
+  }
+}
+
+main();
\ No newline at end of file

From 3030bfe7e768a4a5987538f2dbe535635c70690d Mon Sep 17 00:00:00 2001
From: isaac hershenson <ihershenson@hmc.edu>
Date: Wed, 28 Aug 2024 21:41:57 -0700
Subject: [PATCH 11/21] x

---
 package.json |   4 +-
 yarn.lock    | 134 +++++++++++++++++++++++++++++++++++++++++++++++++--
 2 files changed, 132 insertions(+), 6 deletions(-)

diff --git a/package.json b/package.json
index 8467f7e5..12cac103 100644
--- a/package.json
+++ b/package.json
@@ -42,6 +42,7 @@
     "cheminfo-types": "^1.4.0",
     "d3": "^7.9.0",
     "esm-hook": "^0.1.4",
+    "markdown-link-check": "^3.10.3",
     "readline": "^1.3.0",
     "release-it": "^17.6.0",
     "semver": "^7.6.3",
@@ -49,8 +50,7 @@
     "tsx": "^4.7.0",
     "turbo": "canary",
     "typedoc": "^0.25.13",
-    "typescript": "^4.9.5 || ^5.4.5",
-    "markdown-link-check": "^3.10.3"
+    "typescript": "^4.9.5 || ^5.4.5"
   },
   "resolutions": {
     "cheerio": "^1.0.0-rc.12",
diff --git a/yarn.lock b/yarn.lock
index df20aa0a..0790876e 100644
--- a/yarn.lock
+++ b/yarn.lock
@@ -4022,6 +4022,13 @@ __metadata:
   languageName: node
   linkType: hard
 
+"async@npm:^3.2.5":
+  version: 3.2.6
+  resolution: "async@npm:3.2.6"
+  checksum: ee6eb8cd8a0ab1b58bd2a3ed6c415e93e773573a91d31df9d5ef559baafa9dab37d3b096fa7993e84585cac3697b2af6ddb9086f45d3ac8cae821bb2aab65682
+  languageName: node
+  linkType: hard
+
 "asynckit@npm:^0.4.0":
   version: 0.4.0
   resolution: "asynckit@npm:0.4.0"
@@ -4755,6 +4762,13 @@ __metadata:
   languageName: node
   linkType: hard
 
+"commander@npm:^12.1.0":
+  version: 12.1.0
+  resolution: "commander@npm:12.1.0"
+  checksum: 68e9818b00fc1ed9cdab9eb16905551c2b768a317ae69a5e3c43924c2b20ac9bb65b27e1cab36aeda7b6496376d4da908996ba2c0b5d79463e0fb1e77935d514
+  languageName: node
+  linkType: hard
+
 "commondir@npm:^1.0.1":
   version: 1.0.1
   resolution: "commondir@npm:1.0.1"
@@ -7273,6 +7287,15 @@ __metadata:
   languageName: node
   linkType: hard
 
+"html-link-extractor@npm:^1.0.5":
+  version: 1.0.5
+  resolution: "html-link-extractor@npm:1.0.5"
+  dependencies:
+    cheerio: ^1.0.0-rc.10
+  checksum: 8974e15fb2cbe451274ab1704a984b75bdb66e56ac69fa0d14b100280de9782f0248deef200dafa92021f3313a25933ce86b06f218c7098414553a70bda93560
+  languageName: node
+  linkType: hard
+
 "htmlparser2@npm:^8.0.1":
   version: 8.0.2
   resolution: "htmlparser2@npm:8.0.2"
@@ -7355,7 +7378,7 @@ __metadata:
   languageName: node
   linkType: hard
 
-"iconv-lite@npm:0.6, iconv-lite@npm:^0.6.2":
+"iconv-lite@npm:0.6, iconv-lite@npm:^0.6.2, iconv-lite@npm:^0.6.3":
   version: 0.6.3
   resolution: "iconv-lite@npm:0.6.3"
   dependencies:
@@ -7516,6 +7539,13 @@ __metadata:
   languageName: node
   linkType: hard
 
+"is-absolute-url@npm:^4.0.1":
+  version: 4.0.1
+  resolution: "is-absolute-url@npm:4.0.1"
+  checksum: de172a718439982a54477fdae55f21be69ec0e6a4b205db5484975d2f4ee749851fd46c28f3790dfc51a274c2ed1d0f8457b6d1fff02ab829069fd9cc761e48c
+  languageName: node
+  linkType: hard
+
 "is-any-array@npm:^2.0.0":
   version: 2.0.1
   resolution: "is-any-array@npm:2.0.1"
@@ -7778,6 +7808,15 @@ __metadata:
   languageName: node
   linkType: hard
 
+"is-relative-url@npm:^4.0.0":
+  version: 4.0.0
+  resolution: "is-relative-url@npm:4.0.0"
+  dependencies:
+    is-absolute-url: ^4.0.1
+  checksum: 9556fc1d7d88b147428f237408a02ecab2a9bf45e2b93cf17069ada5207ff4050dcd5c3a1cf9bbc8c9133a858de9228a0c6c9c45a6a84eb0b98e210cacbe99ea
+  languageName: node
+  linkType: hard
+
 "is-shared-array-buffer@npm:^1.0.2, is-shared-array-buffer@npm:^1.0.3":
   version: 1.0.3
   resolution: "is-shared-array-buffer@npm:1.0.3"
@@ -7890,6 +7929,15 @@ __metadata:
   languageName: node
   linkType: hard
 
+"isemail@npm:^3.2.0":
+  version: 3.2.0
+  resolution: "isemail@npm:3.2.0"
+  dependencies:
+    punycode: 2.x.x
+  checksum: 77adfbe8d6b3f9970c37516e008fd1c2e33be186f4cd09b31daf37a9fa8f82adc0dd8ce4bd12818f0c0e63018f9ec0c22490793d704ed635770c98a9d48b21c4
+  languageName: node
+  linkType: hard
+
 "isexe@npm:^2.0.0":
   version: 2.0.0
   resolution: "isexe@npm:2.0.0"
@@ -9204,6 +9252,7 @@ __metadata:
     cheminfo-types: ^1.4.0
     d3: ^7.9.0
     esm-hook: ^0.1.4
+    markdown-link-check: ^3.10.3
     readline: ^1.3.0
     release-it: ^17.6.0
     semver: ^7.6.3
@@ -9322,6 +9371,19 @@ __metadata:
   languageName: node
   linkType: hard
 
+"link-check@npm:^5.3.0":
+  version: 5.3.0
+  resolution: "link-check@npm:5.3.0"
+  dependencies:
+    is-relative-url: ^4.0.0
+    isemail: ^3.2.0
+    ms: ^2.1.3
+    needle: ^3.3.1
+    proxy-agent: ^6.4.0
+  checksum: e4a19314bee54eda5f55ca8a53750b0177a45ff11c5df58d71e251ae8fdebbdd24ef28c84a26be5cda51967d394ed57c0d7413a6aa0a4d11a83d87cb2498b7b2
+  languageName: node
+  linkType: hard
+
 "locate-path@npm:^5.0.0":
   version: 5.0.0
   resolution: "locate-path@npm:5.0.0"
@@ -9520,6 +9582,44 @@ __metadata:
   languageName: node
   linkType: hard
 
+"markdown-link-check@npm:^3.10.3":
+  version: 3.12.2
+  resolution: "markdown-link-check@npm:3.12.2"
+  dependencies:
+    async: ^3.2.5
+    chalk: ^5.3.0
+    commander: ^12.1.0
+    link-check: ^5.3.0
+    lodash: ^4.17.21
+    markdown-link-extractor: ^4.0.2
+    needle: ^3.3.1
+    progress: ^2.0.3
+    proxy-agent: ^6.4.0
+  bin:
+    markdown-link-check: markdown-link-check
+  checksum: da67cf618cafe432b546e51990985fdffd5bb399d884c9bd4f9418aa51f4d7ab12d876b9418b3f4bb17992e6fe8ec9f91cc739a586482dff3b5078ef94a8c949
+  languageName: node
+  linkType: hard
+
+"markdown-link-extractor@npm:^4.0.2":
+  version: 4.0.2
+  resolution: "markdown-link-extractor@npm:4.0.2"
+  dependencies:
+    html-link-extractor: ^1.0.5
+    marked: ^12.0.1
+  checksum: c3e0f2f6dca39a91bd074b44c51026ad59c1704a67fc9e0b6df12a559d3c7b7722ba9db78fcc0f6860d74b56f1dfc811daccd891d75228da93b3eff407a248a5
+  languageName: node
+  linkType: hard
+
+"marked@npm:^12.0.1":
+  version: 12.0.2
+  resolution: "marked@npm:12.0.2"
+  bin:
+    marked: bin/marked.js
+  checksum: 966422e2ba519294aa657bacb2e51784e4b641c1c8f15bdf9315878993c4ea09fe0d00ba2da761e443a3c52cc285c452644fd107ab0f356669bd5aac08d5c0bd
+  languageName: node
+  linkType: hard
+
 "marked@npm:^4.3.0":
   version: 4.3.0
   resolution: "marked@npm:4.3.0"
@@ -9860,7 +9960,7 @@ __metadata:
   languageName: node
   linkType: hard
 
-"ms@npm:^2.0.0, ms@npm:^2.1.1":
+"ms@npm:^2.0.0, ms@npm:^2.1.1, ms@npm:^2.1.3":
   version: 2.1.3
   resolution: "ms@npm:2.1.3"
   checksum: aa92de608021b242401676e35cfa5aa42dd70cbdc082b916da7fb925c542173e36bce97ea3e804923fe92c0ad991434e4a38327e15a1b5b5f945d66df615ae6d
@@ -9897,6 +9997,18 @@ __metadata:
   languageName: node
   linkType: hard
 
+"needle@npm:^3.3.1":
+  version: 3.3.1
+  resolution: "needle@npm:3.3.1"
+  dependencies:
+    iconv-lite: ^0.6.3
+    sax: ^1.2.4
+  bin:
+    needle: bin/needle
+  checksum: ed4864d7ee85f1037ac803154868bf7151fa59399c1e55e5d93ca26a9d16e1c8ccbe9552d846ce7e2519b4bce1de3e81a501f0dc33244e02902e27cf5a9bc11d
+  languageName: node
+  linkType: hard
+
 "negotiator@npm:^0.6.3":
   version: 0.6.3
   resolution: "negotiator@npm:0.6.3"
@@ -10836,6 +10948,13 @@ __metadata:
   languageName: node
   linkType: hard
 
+"progress@npm:^2.0.3":
+  version: 2.0.3
+  resolution: "progress@npm:2.0.3"
+  checksum: f67403fe7b34912148d9252cb7481266a354bd99ce82c835f79070643bb3c6583d10dbcfda4d41e04bbc1d8437e9af0fb1e1f2135727878f5308682a579429b7
+  languageName: node
+  linkType: hard
+
 "promise-retry@npm:^2.0.1":
   version: 2.0.1
   resolution: "promise-retry@npm:2.0.1"
@@ -10894,7 +11013,7 @@ __metadata:
   languageName: node
   linkType: hard
 
-"proxy-agent@npm:6.4.0":
+"proxy-agent@npm:6.4.0, proxy-agent@npm:^6.4.0":
   version: 6.4.0
   resolution: "proxy-agent@npm:6.4.0"
   dependencies:
@@ -10927,7 +11046,7 @@ __metadata:
   languageName: node
   linkType: hard
 
-"punycode@npm:^2.1.0, punycode@npm:^2.3.0":
+"punycode@npm:2.x.x, punycode@npm:^2.1.0, punycode@npm:^2.3.0":
   version: 2.3.1
   resolution: "punycode@npm:2.3.1"
   checksum: bb0a0ceedca4c3c57a9b981b90601579058903c62be23c5e8e843d2c2d4148a3ecf029d5133486fb0e1822b098ba8bba09e89d6b21742d02fa26bda6441a6fb2
@@ -11394,6 +11513,13 @@ __metadata:
   languageName: node
   linkType: hard
 
+"sax@npm:^1.2.4":
+  version: 1.4.1
+  resolution: "sax@npm:1.4.1"
+  checksum: 3ad64df16b743f0f2eb7c38ced9692a6d924f1cd07bbe45c39576c2cf50de8290d9d04e7b2228f924c7d05fecc4ec5cf651423278e0c7b63d260c387ef3af84a
+  languageName: node
+  linkType: hard
+
 "semver-diff@npm:^4.0.0":
   version: 4.0.0
   resolution: "semver-diff@npm:4.0.0"

From 13341496429b3c7fc74674a78192e99ac1f3ca3f Mon Sep 17 00:00:00 2001
From: isaac hershenson <ihershenson@hmc.edu>
Date: Wed, 28 Aug 2024 22:14:16 -0700
Subject: [PATCH 12/21] wip

---
 scripts/check-link.js | 94 +++++++++++++++----------------------------
 1 file changed, 32 insertions(+), 62 deletions(-)

diff --git a/scripts/check-link.js b/scripts/check-link.js
index f3312da1..b525704e 100644
--- a/scripts/check-link.js
+++ b/scripts/check-link.js
@@ -1,75 +1,45 @@
-const { exec } = require('child_process');
 const fs = require('fs');
 const path = require('path');
-const markdownLinkCheck = require('markdown-link-check');
-
-const ignoredUrls = [
-  'https://(api|web)\\.smith\\.langchain\\.com/.*',
-  'https://x\\.com/.*'
-];
-
-function convertNotebookToMarkdown(filePath) {
-  return new Promise((resolve, reject) => {
-    const outputPath = filePath.replace('.ipynb', '.md');
-    exec(`jupyter nbconvert --to markdown "${filePath}" --output "${outputPath}"`, (error) => {
-      if (error) {
-        reject(error);
-      } else {
-        resolve(outputPath);
-      }
-    });
-  });
+const { execSync } = require('child_process');
+
+// Function to find all .ipynb files in the given directory
+function findIpynbFiles(dir) {
+  let results = [];
+  const files = fs.readdirSync(dir);
+  for (const file of files) {
+    const filePath = path.join(dir, file);
+    const stat = fs.statSync(filePath);
+    if (stat.isDirectory()) {
+      results = results.concat(findIpynbFiles(filePath));
+    } else if (path.extname(file) === '.ipynb') {
+      results.push(filePath);
+    }
+  }
+  return results;
 }
 
-function checkLinks(filePath) {
-  return new Promise((resolve, reject) => {
-    const markdown = fs.readFileSync(filePath, 'utf8');
-    markdownLinkCheck(markdown, {
-      ignorePatterns: ignoredUrls,
-      baseUrl: 'https://github.com', // Adjust this if needed
-      httpHeaders: [
-        {
-          urls: ['https://github.com'],
-          headers: {
-            'User-Agent': 'Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/93.0.4577.63 Safari/537.36'
-          }
-        }
-      ]
-    }, (err, results) => {
-      if (err) {
-        reject(err);
-      } else {
-        const brokenLinks = results.filter(result => result.status === 'dead');
-        resolve(brokenLinks);
-      }
-    });
-  });
-}
+// Main function to check links
+function checkLinks() {
+  const ignorePatterns = [
+    'https://(api|web)\\.smith\\.langchain\\.com/.*',
+    'https://x\\.com/.*'
+  ];
 
-async function main() {
-  const changedFiles = process.env.CHANGED_FILES.split(' ');
-  const notebookFiles = changedFiles.filter(file => path.extname(file) === '.ipynb');
+  const ipynbFiles = findIpynbFiles('.');
+  console.log('Found .ipynb files:', ipynbFiles);
 
-  for (const file of notebookFiles) {
+  for (const file of ipynbFiles) {
+    console.log(`Checking links in ${file}`);
     try {
-      const markdownFile = await convertNotebookToMarkdown(file);
-      const brokenLinks = await checkLinks(markdownFile);
-
-      if (brokenLinks.length > 0) {
-        console.error(`Broken links found in ${file}:`);
-        brokenLinks.forEach(link => console.error(`- ${link.link}: ${link.statusCode}`));
-        process.exit(1);
+      execSync(`yarn run linkinator ${file} ${ignorePatterns.map(pattern => `--skip "${pattern}"`).join(' ')}`, { stdio: 'inherit' });
+    } catch (error) {
+      if (error.status === 5) {
+        console.log('Broken links found, but continuing...');
       } else {
-        console.log(`No broken links found in ${file}`);
+        throw error;
       }
-
-      // Clean up the temporary markdown file
-      fs.unlinkSync(markdownFile);
-    } catch (error) {
-      console.error(`Error processing ${file}:`, error);
-      process.exit(1);
     }
   }
 }
 
-main();
\ No newline at end of file
+checkLinks();
\ No newline at end of file

From fa0c8f567ebdde7444b4af7138f88d3f5ab1f825 Mon Sep 17 00:00:00 2001
From: isaac hershenson <ihershenson@hmc.edu>
Date: Wed, 28 Aug 2024 22:15:15 -0700
Subject: [PATCH 13/21] x

---
 .github/workflows/link_check.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/link_check.yml b/.github/workflows/link_check.yml
index 4a910fff..00d78a80 100644
--- a/.github/workflows/link_check.yml
+++ b/.github/workflows/link_check.yml
@@ -54,4 +54,5 @@ jobs:
         env:
           CHANGED_FILES: ${{ steps.changed-files.outputs.all_changed_files }}
         run: |
+          pwd
           yarn check-links
\ No newline at end of file

From d4a00b5a020634d074c4dc11225776f58fce605a Mon Sep 17 00:00:00 2001
From: isaac hershenson <ihershenson@hmc.edu>
Date: Wed, 28 Aug 2024 22:21:18 -0700
Subject: [PATCH 14/21] x

---
 .github/workflows/link_check.yml | 14 ++++++++++++++
 1 file changed, 14 insertions(+)

diff --git a/.github/workflows/link_check.yml b/.github/workflows/link_check.yml
index 00d78a80..ee6444b2 100644
--- a/.github/workflows/link_check.yml
+++ b/.github/workflows/link_check.yml
@@ -54,5 +54,19 @@ jobs:
         env:
           CHANGED_FILES: ${{ steps.changed-files.outputs.all_changed_files }}
         run: |
+          echo "Current directory:"
           pwd
+          echo "\nDirectory contents:"
+          ls -la
+          echo "\nScripts directory contents:"
+          ls -la scripts/
+          echo "\nNode.js version:"
+          node --version
+          echo "\nYarn version:"
+          yarn --version
+          echo "\nRepository structure:"
+          tree -L 3
+          echo "\nFile permissions of scripts directory:"
+          ls -l scripts/
+          echo "\nContent of check-links.js:"
           yarn check-links
\ No newline at end of file

From b7ce2e88014100b7dbcb08384227a6d2731e9856 Mon Sep 17 00:00:00 2001
From: isaac hershenson <ihershenson@hmc.edu>
Date: Wed, 28 Aug 2024 22:28:00 -0700
Subject: [PATCH 15/21] z

---
 .github/workflows/link_check.yml | 16 +---------------
 1 file changed, 1 insertion(+), 15 deletions(-)

diff --git a/.github/workflows/link_check.yml b/.github/workflows/link_check.yml
index ee6444b2..5d184372 100644
--- a/.github/workflows/link_check.yml
+++ b/.github/workflows/link_check.yml
@@ -54,19 +54,5 @@ jobs:
         env:
           CHANGED_FILES: ${{ steps.changed-files.outputs.all_changed_files }}
         run: |
-          echo "Current directory:"
-          pwd
-          echo "\nDirectory contents:"
-          ls -la
-          echo "\nScripts directory contents:"
-          ls -la scripts/
-          echo "\nNode.js version:"
-          node --version
-          echo "\nYarn version:"
-          yarn --version
-          echo "\nRepository structure:"
-          tree -L 3
-          echo "\nFile permissions of scripts directory:"
-          ls -l scripts/
-          echo "\nContent of check-links.js:"
+          chmod +x scripts/check-links.js
           yarn check-links
\ No newline at end of file

From 8d867f59b99fca7679a951c62bd4f669c938f7bc Mon Sep 17 00:00:00 2001
From: isaac hershenson <ihershenson@hmc.edu>
Date: Wed, 28 Aug 2024 22:31:47 -0700
Subject: [PATCH 16/21] z

---
 scripts/{check-link.js => check-links.js} | 0
 1 file changed, 0 insertions(+), 0 deletions(-)
 rename scripts/{check-link.js => check-links.js} (100%)

diff --git a/scripts/check-link.js b/scripts/check-links.js
similarity index 100%
rename from scripts/check-link.js
rename to scripts/check-links.js

From 0b89c62364bd35a7dab8044d451935a878906380 Mon Sep 17 00:00:00 2001
From: isaac hershenson <ihershenson@hmc.edu>
Date: Wed, 28 Aug 2024 22:34:17 -0700
Subject: [PATCH 17/21] x

---
 .github/workflows/link_check.yml            | 1 -
 package.json                                | 2 +-
 scripts/{check-links.js => check-links.cjs} | 0
 3 files changed, 1 insertion(+), 2 deletions(-)
 rename scripts/{check-links.js => check-links.cjs} (100%)

diff --git a/.github/workflows/link_check.yml b/.github/workflows/link_check.yml
index 5d184372..4a910fff 100644
--- a/.github/workflows/link_check.yml
+++ b/.github/workflows/link_check.yml
@@ -54,5 +54,4 @@ jobs:
         env:
           CHANGED_FILES: ${{ steps.changed-files.outputs.all_changed_files }}
         run: |
-          chmod +x scripts/check-links.js
           yarn check-links
\ No newline at end of file
diff --git a/package.json b/package.json
index 12cac103..76591446 100644
--- a/package.json
+++ b/package.json
@@ -29,7 +29,7 @@
     "format": "turbo run format",
     "format:check": "turbo run format:check",
     "release": "node scripts/release_workspace.cjs --workspace",
-    "check-links": "node scripts/check-links.js"
+    "check-links": "node scripts/check-links.cjs"
   },
   "author": "LangChain",
   "license": "MIT",
diff --git a/scripts/check-links.js b/scripts/check-links.cjs
similarity index 100%
rename from scripts/check-links.js
rename to scripts/check-links.cjs

From c1a468c3adbdb81feb5100e86c20c864c8535282 Mon Sep 17 00:00:00 2001
From: isaac hershenson <ihershenson@hmc.edu>
Date: Wed, 28 Aug 2024 22:39:54 -0700
Subject: [PATCH 18/21] x

---
 package.json            |   1 +
 scripts/check-links.cjs |  55 +++--
 yarn.lock               | 497 +++++++++++++++++++++++++++++++++++++++-
 3 files changed, 523 insertions(+), 30 deletions(-)

diff --git a/package.json b/package.json
index 76591446..4f8e73a4 100644
--- a/package.json
+++ b/package.json
@@ -42,6 +42,7 @@
     "cheminfo-types": "^1.4.0",
     "d3": "^7.9.0",
     "esm-hook": "^0.1.4",
+    "linkinator": "^4.0.5",
     "markdown-link-check": "^3.10.3",
     "readline": "^1.3.0",
     "release-it": "^17.6.0",
diff --git a/scripts/check-links.cjs b/scripts/check-links.cjs
index b525704e..f4f8e06c 100644
--- a/scripts/check-links.cjs
+++ b/scripts/check-links.cjs
@@ -1,16 +1,20 @@
 const fs = require('fs');
 const path = require('path');
-const { execSync } = require('child_process');
+const { LinkChecker } = require('linkinator');
 
-// Function to find all .ipynb files in the given directory
-function findIpynbFiles(dir) {
+const ignorePatterns = [
+  'https://(api|web)\\.smith\\.langchain\\.com/.*',
+  'https://x\\.com/.*'
+];
+
+async function findIpynbFiles(dir) {
+  const files = await fs.promises.readdir(dir);
   let results = [];
-  const files = fs.readdirSync(dir);
   for (const file of files) {
     const filePath = path.join(dir, file);
-    const stat = fs.statSync(filePath);
+    const stat = await fs.promises.stat(filePath);
     if (stat.isDirectory()) {
-      results = results.concat(findIpynbFiles(filePath));
+      results = results.concat(await findIpynbFiles(filePath));
     } else if (path.extname(file) === '.ipynb') {
       results.push(filePath);
     }
@@ -18,28 +22,39 @@ function findIpynbFiles(dir) {
   return results;
 }
 
-// Main function to check links
-function checkLinks() {
-  const ignorePatterns = [
-    'https://(api|web)\\.smith\\.langchain\\.com/.*',
-    'https://x\\.com/.*'
-  ];
-
-  const ipynbFiles = findIpynbFiles('.');
+async function checkLinks() {
+  const ipynbFiles = await findIpynbFiles('.');
   console.log('Found .ipynb files:', ipynbFiles);
 
+  const checker = new LinkChecker();
+
+  checker.on('link', (result) => {
+    console.log(`${result.status} ${result.url}`);
+  });
+
   for (const file of ipynbFiles) {
     console.log(`Checking links in ${file}`);
     try {
-      execSync(`yarn run linkinator ${file} ${ignorePatterns.map(pattern => `--skip "${pattern}"`).join(' ')}`, { stdio: 'inherit' });
-    } catch (error) {
-      if (error.status === 5) {
-        console.log('Broken links found, but continuing...');
+      const result = await checker.check({
+        path: file,
+        recurse: false,
+        linksToSkip: ignorePatterns,
+      });
+      
+      if (result.passed) {
+        console.log(`All links in ${file} are valid.`);
       } else {
-        throw error;
+        console.error(`Broken links found in ${file}.`);
+        process.exitCode = 1;
       }
+    } catch (error) {
+      console.error(`Error checking links in ${file}:`, error);
+      process.exitCode = 1;
     }
   }
 }
 
-checkLinks();
\ No newline at end of file
+checkLinks().catch(error => {
+  console.error('An error occurred:', error);
+  process.exitCode = 1;
+});
\ No newline at end of file
diff --git a/yarn.lock b/yarn.lock
index 0790876e..216276de 100644
--- a/yarn.lock
+++ b/yarn.lock
@@ -3421,6 +3421,13 @@ __metadata:
   languageName: node
   linkType: hard
 
+"@types/minimist@npm:^1.2.2":
+  version: 1.2.5
+  resolution: "@types/minimist@npm:1.2.5"
+  checksum: 477047b606005058ab0263c4f58097136268007f320003c348794f74adedc3166ffc47c80ec3e94687787f2ab7f4e72c468223946e79892cf0fd9e25e9970a90
+  languageName: node
+  linkType: hard
+
 "@types/node-fetch@npm:^2.6.4":
   version: 2.6.11
   resolution: "@types/node-fetch@npm:2.6.11"
@@ -3467,6 +3474,13 @@ __metadata:
   languageName: node
   linkType: hard
 
+"@types/normalize-package-data@npm:^2.4.1":
+  version: 2.4.4
+  resolution: "@types/normalize-package-data@npm:2.4.4"
+  checksum: 65dff72b543997b7be8b0265eca7ace0e34b75c3e5fee31de11179d08fa7124a7a5587265d53d0409532ecb7f7fba662c2012807963e1f9b059653ec2c83ee05
+  languageName: node
+  linkType: hard
+
 "@types/resolve@npm:1.17.1":
   version: 1.17.1
   resolution: "@types/resolve@npm:1.17.1"
@@ -3782,6 +3796,15 @@ __metadata:
   languageName: node
   linkType: hard
 
+"agent-base@npm:6":
+  version: 6.0.2
+  resolution: "agent-base@npm:6.0.2"
+  dependencies:
+    debug: 4
+  checksum: f52b6872cc96fd5f622071b71ef200e01c7c4c454ee68bc9accca90c98cfb39f2810e3e9aa330435835eedc8c23f4f8a15267f67c6e245d2b33757575bdac49d
+  languageName: node
+  linkType: hard
+
 "agent-base@npm:^7.0.2, agent-base@npm:^7.1.0, agent-base@npm:^7.1.1":
   version: 7.1.1
   resolution: "agent-base@npm:7.1.1"
@@ -4004,6 +4027,13 @@ __metadata:
   languageName: node
   linkType: hard
 
+"arrify@npm:^1.0.1":
+  version: 1.0.1
+  resolution: "arrify@npm:1.0.1"
+  checksum: 745075dd4a4624ff0225c331dacb99be501a515d39bcb7c84d24660314a6ec28e68131b137e6f7e16318170842ce97538cd298fc4cd6b2cc798e0b957f2747e7
+  languageName: node
+  linkType: hard
+
 "ast-types@npm:^0.13.4":
   version: 0.13.4
   resolution: "ast-types@npm:0.13.4"
@@ -4440,6 +4470,18 @@ __metadata:
   languageName: node
   linkType: hard
 
+"camelcase-keys@npm:^8.0.2":
+  version: 8.0.2
+  resolution: "camelcase-keys@npm:8.0.2"
+  dependencies:
+    camelcase: ^7.0.0
+    map-obj: ^4.3.0
+    quick-lru: ^6.1.1
+    type-fest: ^2.13.0
+  checksum: 878fdaffa55737486101845232b2bc017fec95e06711d8a4133461cabf2432b55a59b20ff6afafce9b48a5629f25181bac3ecb10023032d3eb7cf3247c6e34f6
+  languageName: node
+  linkType: hard
+
 "camelcase@npm:6, camelcase@npm:^6.2.0":
   version: 6.3.0
   resolution: "camelcase@npm:6.3.0"
@@ -4454,7 +4496,7 @@ __metadata:
   languageName: node
   linkType: hard
 
-"camelcase@npm:^7.0.1":
+"camelcase@npm:^7.0.0, camelcase@npm:^7.0.1":
   version: 7.0.1
   resolution: "camelcase@npm:7.0.1"
   checksum: 86ab8f3ebf08bcdbe605a211a242f00ed30d8bfb77dab4ebb744dd36efbc84432d1c4adb28975ba87a1b8be40a80fbd1e60e2f06565315918fa7350011a26d3d
@@ -4468,7 +4510,7 @@ __metadata:
   languageName: node
   linkType: hard
 
-"chalk@npm:5.3.0, chalk@npm:^5.2.0, chalk@npm:^5.3.0":
+"chalk@npm:5.3.0, chalk@npm:^5.0.0, chalk@npm:^5.2.0, chalk@npm:^5.3.0":
   version: 5.3.0
   resolution: "chalk@npm:5.3.0"
   checksum: 623922e077b7d1e9dedaea6f8b9e9352921f8ae3afe739132e0e00c275971bdd331268183b2628cf4ab1727c45ea1f28d7e24ac23ce1db1eb653c414ca8a5a80
@@ -5292,13 +5334,30 @@ __metadata:
   languageName: node
   linkType: hard
 
-"decamelize@npm:1.2.0":
+"decamelize-keys@npm:^1.1.0":
+  version: 1.1.1
+  resolution: "decamelize-keys@npm:1.1.1"
+  dependencies:
+    decamelize: ^1.1.0
+    map-obj: ^1.0.0
+  checksum: fc645fe20b7bda2680bbf9481a3477257a7f9304b1691036092b97ab04c0ab53e3bf9fcc2d2ae382536568e402ec41fb11e1d4c3836a9abe2d813dd9ef4311e0
+  languageName: node
+  linkType: hard
+
+"decamelize@npm:1.2.0, decamelize@npm:^1.1.0":
   version: 1.2.0
   resolution: "decamelize@npm:1.2.0"
   checksum: ad8c51a7e7e0720c70ec2eeb1163b66da03e7616d7b98c9ef43cce2416395e84c1e9548dd94f5f6ffecfee9f8b94251fc57121a8b021f2ff2469b2bae247b8aa
   languageName: node
   linkType: hard
 
+"decamelize@npm:^6.0.0":
+  version: 6.0.0
+  resolution: "decamelize@npm:6.0.0"
+  checksum: 0066bc30798ec11e01adf0c19ad975caef86545d4bb6f70cfb90b7eb8e3cbf7974cf774ac2e6ea2586e4e07b1f654bfecc4e772c42128a79a89f8584fc546753
+  languageName: node
+  linkType: hard
+
 "decompress-response@npm:^6.0.0":
   version: 6.0.0
   resolution: "decompress-response@npm:6.0.0"
@@ -5512,7 +5571,7 @@ __metadata:
   languageName: node
   linkType: hard
 
-"domutils@npm:^3.0.1":
+"domutils@npm:^3.0.1, domutils@npm:^3.1.0":
   version: 3.1.0
   resolution: "domutils@npm:3.1.0"
   dependencies:
@@ -5623,7 +5682,7 @@ __metadata:
   languageName: node
   linkType: hard
 
-"entities@npm:^4.2.0, entities@npm:^4.4.0":
+"entities@npm:^4.2.0, entities@npm:^4.4.0, entities@npm:^4.5.0":
   version: 4.5.0
   resolution: "entities@npm:4.5.0"
   checksum: 853f8ebd5b425d350bffa97dd6958143179a5938352ccae092c62d1267c4e392a039be1bae7d51b6e4ffad25f51f9617531fedf5237f15df302ccfb452cbf2d7
@@ -6154,6 +6213,13 @@ __metadata:
   languageName: node
   linkType: hard
 
+"escape-html@npm:^1.0.3":
+  version: 1.0.3
+  resolution: "escape-html@npm:1.0.3"
+  checksum: 6213ca9ae00d0ab8bccb6d8d4e0a98e76237b2410302cf7df70aaa6591d509a2a37ce8998008cbecae8fc8ffaadf3fb0229535e6a145f3ce0b211d060decbb24
+  languageName: node
+  linkType: hard
+
 "escape-string-regexp@npm:^1.0.5":
   version: 1.0.5
   resolution: "escape-string-regexp@npm:1.0.5"
@@ -6561,6 +6627,13 @@ __metadata:
   languageName: node
   linkType: hard
 
+"extend@npm:^3.0.2":
+  version: 3.0.2
+  resolution: "extend@npm:3.0.2"
+  checksum: a50a8309ca65ea5d426382ff09f33586527882cf532931cb08ca786ea3146c0553310bda688710ff61d7668eba9f96b923fe1420cdf56a2c3eaf30fcab87b515
+  languageName: node
+  linkType: hard
+
 "external-editor@npm:^3.1.0":
   version: 3.1.0
   resolution: "external-editor@npm:3.1.0"
@@ -6704,6 +6777,16 @@ __metadata:
   languageName: node
   linkType: hard
 
+"find-up@npm:^6.3.0":
+  version: 6.3.0
+  resolution: "find-up@npm:6.3.0"
+  dependencies:
+    locate-path: ^7.1.0
+    path-exists: ^5.0.0
+  checksum: 9a21b7f9244a420e54c6df95b4f6fc3941efd3c3e5476f8274eb452f6a85706e7a6a90de71353ee4f091fcb4593271a6f92810a324ec542650398f928783c280
+  languageName: node
+  linkType: hard
+
 "flat-cache@npm:^3.0.4":
   version: 3.2.0
   resolution: "flat-cache@npm:3.2.0"
@@ -6899,6 +6982,18 @@ __metadata:
   languageName: node
   linkType: hard
 
+"gaxios@npm:^5.0.0":
+  version: 5.1.3
+  resolution: "gaxios@npm:5.1.3"
+  dependencies:
+    extend: ^3.0.2
+    https-proxy-agent: ^5.0.0
+    is-stream: ^2.0.0
+    node-fetch: ^2.6.9
+  checksum: 1cf72697715c64f6db1d6fa6e9243bb57ee14b0c758338a33790ecac2675d819a1fc0c51b2fab312d9bfe8201cc981c171b70ff60adcaaec881c5bc5610c42f1
+  languageName: node
+  linkType: hard
+
 "gensync@npm:^1.0.0-beta.2":
   version: 1.0.0-beta.2
   resolution: "gensync@npm:1.0.0-beta.2"
@@ -7084,6 +7179,18 @@ __metadata:
   languageName: node
   linkType: hard
 
+"glob@npm:^9.3.2":
+  version: 9.3.5
+  resolution: "glob@npm:9.3.5"
+  dependencies:
+    fs.realpath: ^1.0.0
+    minimatch: ^8.0.2
+    minipass: ^4.2.4
+    path-scurry: ^1.6.1
+  checksum: 94b093adbc591bc36b582f77927d1fb0dbf3ccc231828512b017601408be98d1fe798fc8c0b19c6f2d1a7660339c3502ce698de475e9d938ccbb69b47b647c84
+  languageName: node
+  linkType: hard
+
 "global-directory@npm:^4.0.1":
   version: 4.0.1
   resolution: "global-directory@npm:4.0.1"
@@ -7218,6 +7325,13 @@ __metadata:
   languageName: node
   linkType: hard
 
+"hard-rejection@npm:^2.1.0":
+  version: 2.1.0
+  resolution: "hard-rejection@npm:2.1.0"
+  checksum: 7baaf80a0c7fff4ca79687b4060113f1529589852152fa935e6787a2bc96211e784ad4588fb3048136ff8ffc9dfcf3ae385314a5b24db32de20bea0d1597f9dc
+  languageName: node
+  linkType: hard
+
 "has-bigints@npm:^1.0.1, has-bigints@npm:^1.0.2":
   version: 1.0.2
   resolution: "has-bigints@npm:1.0.2"
@@ -7280,6 +7394,24 @@ __metadata:
   languageName: node
   linkType: hard
 
+"hosted-git-info@npm:^4.0.1":
+  version: 4.1.0
+  resolution: "hosted-git-info@npm:4.1.0"
+  dependencies:
+    lru-cache: ^6.0.0
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+  resolution: "https-proxy-agent@npm:5.0.1"
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+  languageName: node
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+
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   resolution: "inflight@npm:1.0.6"
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+  resolution: "is-core-module@npm:2.15.1"
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+  languageName: node
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+"is-plain-obj@npm:^1.1.0":
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+  resolution: "is-plain-obj@npm:1.1.0"
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+  languageName: node
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   resolution: "is-reference@npm:1.2.1"
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+"kind-of@npm:^6.0.3":
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+  resolution: "kind-of@npm:6.0.3"
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+  languageName: node
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+
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   resolution: "kleur@npm:3.0.3"
@@ -9252,6 +9436,7 @@ __metadata:
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     d3: ^7.9.0
     esm-hook: ^0.1.4
+    linkinator: ^4.0.5
     markdown-link-check: ^3.10.3
     readline: ^1.3.0
     release-it: ^17.6.0
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+  resolution: "linkinator@npm:4.1.3"
+  dependencies:
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+    marked: ^4.0.3
+    meow: ^11.0.0
+    mime: ^3.0.0
+    server-destroy: ^1.0.1
+    srcset: ^5.0.0
+  bin:
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+  checksum: 4450e12a1d304aa11cf43c2b64ccd8e761b6b794e0e0d8f9f438d42f0dcec66b8a5935dbe12ac07715a46934de1a7d9aff34c36bc21ab9afd865ed4a64e7ff47
+  languageName: node
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+
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   resolution: "locate-path@npm:5.0.0"
@@ -9402,6 +9607,15 @@ __metadata:
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+"locate-path@npm:^7.1.0":
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+  resolution: "locate-path@npm:7.2.0"
+  dependencies:
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+  languageName: node
+  linkType: hard
+
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   resolution: "lodash.capitalize@npm:4.2.1"
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-"lru-cache@npm:^7.14.1":
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+  resolution: "lru-cache@npm:6.0.0"
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+  languageName: node
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@@ -9582,6 +9805,20 @@ __metadata:
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+"map-obj@npm:^1.0.0":
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+  resolution: "map-obj@npm:1.0.1"
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+  languageName: node
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+  resolution: "map-obj@npm:4.3.0"
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+  languageName: node
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+
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   resolution: "markdown-link-check@npm:3.12.2"
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   bin:
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+"meow@npm:^11.0.0":
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+  resolution: "meow@npm:11.0.0"
+  dependencies:
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+    decamelize: ^6.0.0
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+    hard-rejection: ^2.1.0
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+    read-pkg-up: ^9.1.0
+    redent: ^4.0.0
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+  languageName: node
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+
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+"mime@npm:^3.0.0":
+  version: 3.0.0
+  resolution: "mime@npm:3.0.0"
+  bin:
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+  checksum: f43f9b7bfa64534e6b05bd6062961681aeb406a5b53673b53b683f27fcc4e739989941836a355eef831f4478923651ecc739f4a5f6e20a76487b432bfd4db928
+  languageName: node
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+
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+  resolution: "min-indent@npm:1.0.1"
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+  languageName: node
+  linkType: hard
+
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   resolution: "minimatch@npm:9.0.3"
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+"minimatch@npm:^8.0.2":
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+  resolution: "minimatch@npm:8.0.4"
+  dependencies:
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+  languageName: node
+  linkType: hard
+
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   resolution: "minimatch@npm:9.0.4"
@@ -9740,6 +10022,17 @@ __metadata:
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+"minimist-options@npm:4.1.0":
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+  resolution: "minimist-options@npm:4.1.0"
+  dependencies:
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+    is-plain-obj: ^1.1.0
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+  languageName: node
+  linkType: hard
+
 "minimist@npm:^1.2.0, minimist@npm:^1.2.3, minimist@npm:^1.2.6":
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   resolution: "minimist@npm:1.2.8"
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+"minipass@npm:^4.2.4":
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+  resolution: "minipass@npm:4.2.8"
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+  languageName: node
+  linkType: hard
+
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+"normalize-package-data@npm:^3.0.2":
+  version: 3.0.3
+  resolution: "normalize-package-data@npm:3.0.3"
+  dependencies:
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+    is-core-module: ^2.5.0
+    semver: ^7.3.4
+    validate-npm-package-license: ^3.0.1
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+  languageName: node
+  linkType: hard
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+  resolution: "normalize-package-data@npm:4.0.1"
+  dependencies:
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+    is-core-module: ^2.8.1
+    semver: ^7.3.5
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+  languageName: node
+  linkType: hard
+
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+"p-limit@npm:^4.0.0":
+  version: 4.0.0
+  resolution: "p-limit@npm:4.0.0"
+  dependencies:
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+  languageName: node
+  linkType: hard
+
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+"p-locate@npm:^6.0.0":
+  version: 6.0.0
+  resolution: "p-locate@npm:6.0.0"
+  dependencies:
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+  languageName: node
+  linkType: hard
+
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+"path-exists@npm:^5.0.0":
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+  resolution: "path-exists@npm:5.0.0"
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+  languageName: node
+  linkType: hard
+
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   resolution: "path-is-absolute@npm:1.0.1"
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-"path-scurry@npm:^1.11.1":
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+"quick-lru@npm:^6.1.1":
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+  resolution: "quick-lru@npm:6.1.2"
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+  languageName: node
+  linkType: hard
+
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   resolution: "rc@npm:1.2.8"
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+"read-pkg-up@npm:^9.1.0":
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+  resolution: "read-pkg-up@npm:9.1.0"
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+  languageName: node
+  linkType: hard
+
+"read-pkg@npm:^7.1.0":
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+  resolution: "read-pkg@npm:7.1.0"
+  dependencies:
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+  languageName: node
+  linkType: hard
+
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   resolution: "readable-stream@npm:3.6.2"
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+"redent@npm:^4.0.0":
+  version: 4.0.0
+  resolution: "redent@npm:4.0.0"
+  dependencies:
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+    strip-indent: ^4.0.0
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+  languageName: node
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+
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   resolution: "regexp.prototype.flags@npm:1.5.2"
@@ -11538,6 +11927,13 @@ __metadata:
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+"server-destroy@npm:^1.0.1":
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+  resolution: "server-destroy@npm:1.0.1"
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+  languageName: node
+  linkType: hard
+
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   resolution: "set-function-length@npm:1.2.2"
@@ -11780,6 +12176,40 @@ __metadata:
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+"spdx-correct@npm:^3.0.0":
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+  resolution: "spdx-correct@npm:3.2.0"
+  dependencies:
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+  languageName: node
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+"spdx-exceptions@npm:^2.1.0":
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+  resolution: "spdx-exceptions@npm:2.5.0"
+  checksum: bb127d6e2532de65b912f7c99fc66097cdea7d64c10d3ec9b5e96524dbbd7d20e01cba818a6ddb2ae75e62bb0c63d5e277a7e555a85cbc8ab40044984fa4ae15
+  languageName: node
+  linkType: hard
+
+"spdx-expression-parse@npm:^3.0.0":
+  version: 3.0.1
+  resolution: "spdx-expression-parse@npm:3.0.1"
+  dependencies:
+    spdx-exceptions: ^2.1.0
+    spdx-license-ids: ^3.0.0
+  checksum: a1c6e104a2cbada7a593eaa9f430bd5e148ef5290d4c0409899855ce8b1c39652bcc88a725259491a82601159d6dc790bedefc9016c7472f7de8de7361f8ccde
+  languageName: node
+  linkType: hard
+
+"spdx-license-ids@npm:^3.0.0":
+  version: 3.0.20
+  resolution: "spdx-license-ids@npm:3.0.20"
+  checksum: 0c57750bedbcff48f3d0e266fbbdaf0aab54217e182f669542ffe0b5a902dce69e8cdfa126a131e1ddd39a9bef4662e357b2b41315d7240b4a28c0a7e782bb40
+  languageName: node
+  linkType: hard
+
 "split2@npm:^4.1.0":
   version: 4.2.0
   resolution: "split2@npm:4.2.0"
@@ -11801,6 +12231,13 @@ __metadata:
   languageName: node
   linkType: hard
 
+"srcset@npm:^5.0.0":
+  version: 5.0.1
+  resolution: "srcset@npm:5.0.1"
+  checksum: 6f58b4b680382ecf2fb8aa82f3d067c1380d621e65ce085c9f27d80323629c1b74f291b52b1cc3997e345b7f77137558e48bb48244ef6f2b698d77ac1f4ef3ff
+  languageName: node
+  linkType: hard
+
 "ssri@npm:^10.0.0":
   version: 10.0.5
   resolution: "ssri@npm:10.0.5"
@@ -11973,6 +12410,15 @@ __metadata:
   languageName: node
   linkType: hard
 
+"strip-indent@npm:^4.0.0":
+  version: 4.0.0
+  resolution: "strip-indent@npm:4.0.0"
+  dependencies:
+    min-indent: ^1.0.1
+  checksum: 06cbcd93da721c46bc13caeb1c00af93a9b18146a1c95927672d2decab6a25ad83662772417cea9317a2507fb143253ecc23c4415b64f5828cef9b638a744598
+  languageName: node
+  linkType: hard
+
 "strip-json-comments@npm:^3.1.1":
   version: 3.1.1
   resolution: "strip-json-comments@npm:3.1.1"
@@ -12170,6 +12616,13 @@ __metadata:
   languageName: node
   linkType: hard
 
+"trim-newlines@npm:^4.0.2":
+  version: 4.1.1
+  resolution: "trim-newlines@npm:4.1.1"
+  checksum: 5b09f8e329e8f33c1111ef26906332ba7ba7248cde3e26fc054bb3d69f2858bf5feedca9559c572ff91f33e52977c28e0d41c387df6a02a633cbb8c2d8238627
+  languageName: node
+  linkType: hard
+
 "ts-api-utils@npm:^1.0.1, ts-api-utils@npm:^1.3.0":
   version: 1.3.0
   resolution: "ts-api-utils@npm:1.3.0"
@@ -12428,13 +12881,20 @@ __metadata:
   languageName: node
   linkType: hard
 
-"type-fest@npm:^2.13.0, type-fest@npm:^2.5.1":
+"type-fest@npm:^2.0.0, type-fest@npm:^2.13.0, type-fest@npm:^2.5.0, type-fest@npm:^2.5.1":
   version: 2.19.0
   resolution: "type-fest@npm:2.19.0"
   checksum: a4ef07ece297c9fba78fc1bd6d85dff4472fe043ede98bd4710d2615d15776902b595abf62bd78339ed6278f021235fb28a96361f8be86ed754f778973a0d278
   languageName: node
   linkType: hard
 
+"type-fest@npm:^3.1.0":
+  version: 3.13.1
+  resolution: "type-fest@npm:3.13.1"
+  checksum: c06b0901d54391dc46de3802375f5579868949d71f93b425ce564e19a428a0d411ae8d8cb0e300d330071d86152c3ea86e744c3f2860a42a79585b6ec2fdae8e
+  languageName: node
+  linkType: hard
+
 "typed-array-buffer@npm:^1.0.2":
   version: 1.0.2
   resolution: "typed-array-buffer@npm:1.0.2"
@@ -12685,6 +13145,16 @@ __metadata:
   languageName: node
   linkType: hard
 
+"validate-npm-package-license@npm:^3.0.1, validate-npm-package-license@npm:^3.0.4":
+  version: 3.0.4
+  resolution: "validate-npm-package-license@npm:3.0.4"
+  dependencies:
+    spdx-correct: ^3.0.0
+    spdx-expression-parse: ^3.0.0
+  checksum: 35703ac889d419cf2aceef63daeadbe4e77227c39ab6287eeb6c1b36a746b364f50ba22e88591f5d017bc54685d8137bc2d328d0a896e4d3fd22093c0f32a9ad
+  languageName: node
+  linkType: hard
+
 "vscode-oniguruma@npm:^1.7.0":
   version: 1.7.0
   resolution: "vscode-oniguruma@npm:1.7.0"
@@ -12980,6 +13450,13 @@ __metadata:
   languageName: node
   linkType: hard
 
+"yocto-queue@npm:^1.0.0":
+  version: 1.1.1
+  resolution: "yocto-queue@npm:1.1.1"
+  checksum: f2e05b767ed3141e6372a80af9caa4715d60969227f38b1a4370d60bffe153c9c5b33a862905609afc9b375ec57cd40999810d20e5e10229a204e8bde7ef255c
+  languageName: node
+  linkType: hard
+
 "yoctocolors-cjs@npm:^2.1.1":
   version: 2.1.2
   resolution: "yoctocolors-cjs@npm:2.1.2"

From 4ec62abb4fec461bef63fb1c3aaafe57889d5d33 Mon Sep 17 00:00:00 2001
From: isaac hershenson <ihershenson@hmc.edu>
Date: Thu, 29 Aug 2024 08:31:13 -0700
Subject: [PATCH 19/21] x

---
 .github/workflows/link_check.yml |  1 +
 scripts/check-links.cjs          | 54 +++++++-------------------------
 2 files changed, 13 insertions(+), 42 deletions(-)

diff --git a/.github/workflows/link_check.yml b/.github/workflows/link_check.yml
index 4a910fff..c42b5a6e 100644
--- a/.github/workflows/link_check.yml
+++ b/.github/workflows/link_check.yml
@@ -45,6 +45,7 @@ jobs:
       - name: Install dependencies
         run: |
           yarn install --frozen-lockfile
+          npm install linkinator
 
       - name: Get changed files
         id: changed-files
diff --git a/scripts/check-links.cjs b/scripts/check-links.cjs
index f4f8e06c..1a6f9d69 100644
--- a/scripts/check-links.cjs
+++ b/scripts/check-links.cjs
@@ -1,60 +1,30 @@
-const fs = require('fs');
-const path = require('path');
-const { LinkChecker } = require('linkinator');
+const { execSync } = require('child_process');
 
 const ignorePatterns = [
   'https://(api|web)\\.smith\\.langchain\\.com/.*',
   'https://x\\.com/.*'
 ];
 
-async function findIpynbFiles(dir) {
-  const files = await fs.promises.readdir(dir);
-  let results = [];
-  for (const file of files) {
-    const filePath = path.join(dir, file);
-    const stat = await fs.promises.stat(filePath);
-    if (stat.isDirectory()) {
-      results = results.concat(await findIpynbFiles(filePath));
-    } else if (path.extname(file) === '.ipynb') {
-      results.push(filePath);
-    }
-  }
-  return results;
-}
+function checkLinks() {
+  const changedFiles = process.env.CHANGED_FILES ? process.env.CHANGED_FILES.split(' ') : [];
+  const ipynbFiles = changedFiles.filter(file => file.endsWith('.ipynb'));
 
-async function checkLinks() {
-  const ipynbFiles = await findIpynbFiles('.');
-  console.log('Found .ipynb files:', ipynbFiles);
+  console.log('Changed .ipynb files:', ipynbFiles);
 
-  const checker = new LinkChecker();
-
-  checker.on('link', (result) => {
-    console.log(`${result.status} ${result.url}`);
-  });
+  if (ipynbFiles.length === 0) {
+    console.log('No .ipynb files were changed. Skipping link check.');
+    return;
+  }
 
   for (const file of ipynbFiles) {
     console.log(`Checking links in ${file}`);
     try {
-      const result = await checker.check({
-        path: file,
-        recurse: false,
-        linksToSkip: ignorePatterns,
-      });
-      
-      if (result.passed) {
-        console.log(`All links in ${file} are valid.`);
-      } else {
-        console.error(`Broken links found in ${file}.`);
-        process.exitCode = 1;
-      }
+      execSync(`npx linkinator ${file} ${ignorePatterns.map(pattern => `--skip "${pattern}"`).join(' ')}`, { stdio: 'inherit' });
     } catch (error) {
       console.error(`Error checking links in ${file}:`, error);
-      process.exitCode = 1;
+      process.exit(1);
     }
   }
 }
 
-checkLinks().catch(error => {
-  console.error('An error occurred:', error);
-  process.exitCode = 1;
-});
\ No newline at end of file
+checkLinks();
\ No newline at end of file

From 0175008c666ba03a4a9510253195fbc965bde801 Mon Sep 17 00:00:00 2001
From: isaac hershenson <ihershenson@hmc.edu>
Date: Thu, 29 Aug 2024 08:31:30 -0700
Subject: [PATCH 20/21] x

---
 package.json |   1 -
 yarn.lock    | 497 ++-------------------------------------------------
 2 files changed, 10 insertions(+), 488 deletions(-)

diff --git a/package.json b/package.json
index 4f8e73a4..76591446 100644
--- a/package.json
+++ b/package.json
@@ -42,7 +42,6 @@
     "cheminfo-types": "^1.4.0",
     "d3": "^7.9.0",
     "esm-hook": "^0.1.4",
-    "linkinator": "^4.0.5",
     "markdown-link-check": "^3.10.3",
     "readline": "^1.3.0",
     "release-it": "^17.6.0",
diff --git a/yarn.lock b/yarn.lock
index 216276de..0790876e 100644
--- a/yarn.lock
+++ b/yarn.lock
@@ -3421,13 +3421,6 @@ __metadata:
   languageName: node
   linkType: hard
 
-"@types/minimist@npm:^1.2.2":
-  version: 1.2.5
-  resolution: "@types/minimist@npm:1.2.5"
-  checksum: 477047b606005058ab0263c4f58097136268007f320003c348794f74adedc3166ffc47c80ec3e94687787f2ab7f4e72c468223946e79892cf0fd9e25e9970a90
-  languageName: node
-  linkType: hard
-
 "@types/node-fetch@npm:^2.6.4":
   version: 2.6.11
   resolution: "@types/node-fetch@npm:2.6.11"
@@ -3474,13 +3467,6 @@ __metadata:
   languageName: node
   linkType: hard
 
-"@types/normalize-package-data@npm:^2.4.1":
-  version: 2.4.4
-  resolution: "@types/normalize-package-data@npm:2.4.4"
-  checksum: 65dff72b543997b7be8b0265eca7ace0e34b75c3e5fee31de11179d08fa7124a7a5587265d53d0409532ecb7f7fba662c2012807963e1f9b059653ec2c83ee05
-  languageName: node
-  linkType: hard
-
 "@types/resolve@npm:1.17.1":
   version: 1.17.1
   resolution: "@types/resolve@npm:1.17.1"
@@ -3796,15 +3782,6 @@ __metadata:
   languageName: node
   linkType: hard
 
-"agent-base@npm:6":
-  version: 6.0.2
-  resolution: "agent-base@npm:6.0.2"
-  dependencies:
-    debug: 4
-  checksum: f52b6872cc96fd5f622071b71ef200e01c7c4c454ee68bc9accca90c98cfb39f2810e3e9aa330435835eedc8c23f4f8a15267f67c6e245d2b33757575bdac49d
-  languageName: node
-  linkType: hard
-
 "agent-base@npm:^7.0.2, agent-base@npm:^7.1.0, agent-base@npm:^7.1.1":
   version: 7.1.1
   resolution: "agent-base@npm:7.1.1"
@@ -4027,13 +4004,6 @@ __metadata:
   languageName: node
   linkType: hard
 
-"arrify@npm:^1.0.1":
-  version: 1.0.1
-  resolution: "arrify@npm:1.0.1"
-  checksum: 745075dd4a4624ff0225c331dacb99be501a515d39bcb7c84d24660314a6ec28e68131b137e6f7e16318170842ce97538cd298fc4cd6b2cc798e0b957f2747e7
-  languageName: node
-  linkType: hard
-
 "ast-types@npm:^0.13.4":
   version: 0.13.4
   resolution: "ast-types@npm:0.13.4"
@@ -4470,18 +4440,6 @@ __metadata:
   languageName: node
   linkType: hard
 
-"camelcase-keys@npm:^8.0.2":
-  version: 8.0.2
-  resolution: "camelcase-keys@npm:8.0.2"
-  dependencies:
-    camelcase: ^7.0.0
-    map-obj: ^4.3.0
-    quick-lru: ^6.1.1
-    type-fest: ^2.13.0
-  checksum: 878fdaffa55737486101845232b2bc017fec95e06711d8a4133461cabf2432b55a59b20ff6afafce9b48a5629f25181bac3ecb10023032d3eb7cf3247c6e34f6
-  languageName: node
-  linkType: hard
-
 "camelcase@npm:6, camelcase@npm:^6.2.0":
   version: 6.3.0
   resolution: "camelcase@npm:6.3.0"
@@ -4496,7 +4454,7 @@ __metadata:
   languageName: node
   linkType: hard
 
-"camelcase@npm:^7.0.0, camelcase@npm:^7.0.1":
+"camelcase@npm:^7.0.1":
   version: 7.0.1
   resolution: "camelcase@npm:7.0.1"
   checksum: 86ab8f3ebf08bcdbe605a211a242f00ed30d8bfb77dab4ebb744dd36efbc84432d1c4adb28975ba87a1b8be40a80fbd1e60e2f06565315918fa7350011a26d3d
@@ -4510,7 +4468,7 @@ __metadata:
   languageName: node
   linkType: hard
 
-"chalk@npm:5.3.0, chalk@npm:^5.0.0, chalk@npm:^5.2.0, chalk@npm:^5.3.0":
+"chalk@npm:5.3.0, chalk@npm:^5.2.0, chalk@npm:^5.3.0":
   version: 5.3.0
   resolution: "chalk@npm:5.3.0"
   checksum: 623922e077b7d1e9dedaea6f8b9e9352921f8ae3afe739132e0e00c275971bdd331268183b2628cf4ab1727c45ea1f28d7e24ac23ce1db1eb653c414ca8a5a80
@@ -5334,30 +5292,13 @@ __metadata:
   languageName: node
   linkType: hard
 
-"decamelize-keys@npm:^1.1.0":
-  version: 1.1.1
-  resolution: "decamelize-keys@npm:1.1.1"
-  dependencies:
-    decamelize: ^1.1.0
-    map-obj: ^1.0.0
-  checksum: fc645fe20b7bda2680bbf9481a3477257a7f9304b1691036092b97ab04c0ab53e3bf9fcc2d2ae382536568e402ec41fb11e1d4c3836a9abe2d813dd9ef4311e0
-  languageName: node
-  linkType: hard
-
-"decamelize@npm:1.2.0, decamelize@npm:^1.1.0":
+"decamelize@npm:1.2.0":
   version: 1.2.0
   resolution: "decamelize@npm:1.2.0"
   checksum: ad8c51a7e7e0720c70ec2eeb1163b66da03e7616d7b98c9ef43cce2416395e84c1e9548dd94f5f6ffecfee9f8b94251fc57121a8b021f2ff2469b2bae247b8aa
   languageName: node
   linkType: hard
 
-"decamelize@npm:^6.0.0":
-  version: 6.0.0
-  resolution: "decamelize@npm:6.0.0"
-  checksum: 0066bc30798ec11e01adf0c19ad975caef86545d4bb6f70cfb90b7eb8e3cbf7974cf774ac2e6ea2586e4e07b1f654bfecc4e772c42128a79a89f8584fc546753
-  languageName: node
-  linkType: hard
-
 "decompress-response@npm:^6.0.0":
   version: 6.0.0
   resolution: "decompress-response@npm:6.0.0"
@@ -5571,7 +5512,7 @@ __metadata:
   languageName: node
   linkType: hard
 
-"domutils@npm:^3.0.1, domutils@npm:^3.1.0":
+"domutils@npm:^3.0.1":
   version: 3.1.0
   resolution: "domutils@npm:3.1.0"
   dependencies:
@@ -5682,7 +5623,7 @@ __metadata:
   languageName: node
   linkType: hard
 
-"entities@npm:^4.2.0, entities@npm:^4.4.0, entities@npm:^4.5.0":
+"entities@npm:^4.2.0, entities@npm:^4.4.0":
   version: 4.5.0
   resolution: "entities@npm:4.5.0"
   checksum: 853f8ebd5b425d350bffa97dd6958143179a5938352ccae092c62d1267c4e392a039be1bae7d51b6e4ffad25f51f9617531fedf5237f15df302ccfb452cbf2d7
@@ -6213,13 +6154,6 @@ __metadata:
   languageName: node
   linkType: hard
 
-"escape-html@npm:^1.0.3":
-  version: 1.0.3
-  resolution: "escape-html@npm:1.0.3"
-  checksum: 6213ca9ae00d0ab8bccb6d8d4e0a98e76237b2410302cf7df70aaa6591d509a2a37ce8998008cbecae8fc8ffaadf3fb0229535e6a145f3ce0b211d060decbb24
-  languageName: node
-  linkType: hard
-
 "escape-string-regexp@npm:^1.0.5":
   version: 1.0.5
   resolution: "escape-string-regexp@npm:1.0.5"
@@ -6627,13 +6561,6 @@ __metadata:
   languageName: node
   linkType: hard
 
-"extend@npm:^3.0.2":
-  version: 3.0.2
-  resolution: "extend@npm:3.0.2"
-  checksum: a50a8309ca65ea5d426382ff09f33586527882cf532931cb08ca786ea3146c0553310bda688710ff61d7668eba9f96b923fe1420cdf56a2c3eaf30fcab87b515
-  languageName: node
-  linkType: hard
-
 "external-editor@npm:^3.1.0":
   version: 3.1.0
   resolution: "external-editor@npm:3.1.0"
@@ -6777,16 +6704,6 @@ __metadata:
   languageName: node
   linkType: hard
 
-"find-up@npm:^6.3.0":
-  version: 6.3.0
-  resolution: "find-up@npm:6.3.0"
-  dependencies:
-    locate-path: ^7.1.0
-    path-exists: ^5.0.0
-  checksum: 9a21b7f9244a420e54c6df95b4f6fc3941efd3c3e5476f8274eb452f6a85706e7a6a90de71353ee4f091fcb4593271a6f92810a324ec542650398f928783c280
-  languageName: node
-  linkType: hard
-
 "flat-cache@npm:^3.0.4":
   version: 3.2.0
   resolution: "flat-cache@npm:3.2.0"
@@ -6982,18 +6899,6 @@ __metadata:
   languageName: node
   linkType: hard
 
-"gaxios@npm:^5.0.0":
-  version: 5.1.3
-  resolution: "gaxios@npm:5.1.3"
-  dependencies:
-    extend: ^3.0.2
-    https-proxy-agent: ^5.0.0
-    is-stream: ^2.0.0
-    node-fetch: ^2.6.9
-  checksum: 1cf72697715c64f6db1d6fa6e9243bb57ee14b0c758338a33790ecac2675d819a1fc0c51b2fab312d9bfe8201cc981c171b70ff60adcaaec881c5bc5610c42f1
-  languageName: node
-  linkType: hard
-
 "gensync@npm:^1.0.0-beta.2":
   version: 1.0.0-beta.2
   resolution: "gensync@npm:1.0.0-beta.2"
@@ -7179,18 +7084,6 @@ __metadata:
   languageName: node
   linkType: hard
 
-"glob@npm:^9.3.2":
-  version: 9.3.5
-  resolution: "glob@npm:9.3.5"
-  dependencies:
-    fs.realpath: ^1.0.0
-    minimatch: ^8.0.2
-    minipass: ^4.2.4
-    path-scurry: ^1.6.1
-  checksum: 94b093adbc591bc36b582f77927d1fb0dbf3ccc231828512b017601408be98d1fe798fc8c0b19c6f2d1a7660339c3502ce698de475e9d938ccbb69b47b647c84
-  languageName: node
-  linkType: hard
-
 "global-directory@npm:^4.0.1":
   version: 4.0.1
   resolution: "global-directory@npm:4.0.1"
@@ -7325,13 +7218,6 @@ __metadata:
   languageName: node
   linkType: hard
 
-"hard-rejection@npm:^2.1.0":
-  version: 2.1.0
-  resolution: "hard-rejection@npm:2.1.0"
-  checksum: 7baaf80a0c7fff4ca79687b4060113f1529589852152fa935e6787a2bc96211e784ad4588fb3048136ff8ffc9dfcf3ae385314a5b24db32de20bea0d1597f9dc
-  languageName: node
-  linkType: hard
-
 "has-bigints@npm:^1.0.1, has-bigints@npm:^1.0.2":
   version: 1.0.2
   resolution: "has-bigints@npm:1.0.2"
@@ -7394,24 +7280,6 @@ __metadata:
   languageName: node
   linkType: hard
 
-"hosted-git-info@npm:^4.0.1":
-  version: 4.1.0
-  resolution: "hosted-git-info@npm:4.1.0"
-  dependencies:
-    lru-cache: ^6.0.0
-  checksum: c3f87b3c2f7eb8c2748c8f49c0c2517c9a95f35d26f4bf54b2a8cba05d2e668f3753548b6ea366b18ec8dadb4e12066e19fa382a01496b0ffa0497eb23cbe461
-  languageName: node
-  linkType: hard
-
-"hosted-git-info@npm:^5.0.0":
-  version: 5.2.1
-  resolution: "hosted-git-info@npm:5.2.1"
-  dependencies:
-    lru-cache: ^7.5.1
-  checksum: fa35df185224adfd69141f3b2f8cc31f50e705a5ebb415ccfbfd055c5b94bd08d3e658edf1edad9e2ac7d81831ac7cf261f5d219b3adc8d744fb8cdacaaf2ead
-  languageName: node
-  linkType: hard
-
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-  version: 3.0.20
-  resolution: "spdx-license-ids@npm:3.0.20"
-  checksum: 0c57750bedbcff48f3d0e266fbbdaf0aab54217e182f669542ffe0b5a902dce69e8cdfa126a131e1ddd39a9bef4662e357b2b41315d7240b4a28c0a7e782bb40
-  languageName: node
-  linkType: hard
-
 "split2@npm:^4.1.0":
   version: 4.2.0
   resolution: "split2@npm:4.2.0"
@@ -12231,13 +11801,6 @@ __metadata:
   languageName: node
   linkType: hard
 
-"srcset@npm:^5.0.0":
-  version: 5.0.1
-  resolution: "srcset@npm:5.0.1"
-  checksum: 6f58b4b680382ecf2fb8aa82f3d067c1380d621e65ce085c9f27d80323629c1b74f291b52b1cc3997e345b7f77137558e48bb48244ef6f2b698d77ac1f4ef3ff
-  languageName: node
-  linkType: hard
-
 "ssri@npm:^10.0.0":
   version: 10.0.5
   resolution: "ssri@npm:10.0.5"
@@ -12410,15 +11973,6 @@ __metadata:
   languageName: node
   linkType: hard
 
-"strip-indent@npm:^4.0.0":
-  version: 4.0.0
-  resolution: "strip-indent@npm:4.0.0"
-  dependencies:
-    min-indent: ^1.0.1
-  checksum: 06cbcd93da721c46bc13caeb1c00af93a9b18146a1c95927672d2decab6a25ad83662772417cea9317a2507fb143253ecc23c4415b64f5828cef9b638a744598
-  languageName: node
-  linkType: hard
-
 "strip-json-comments@npm:^3.1.1":
   version: 3.1.1
   resolution: "strip-json-comments@npm:3.1.1"
@@ -12616,13 +12170,6 @@ __metadata:
   languageName: node
   linkType: hard
 
-"trim-newlines@npm:^4.0.2":
-  version: 4.1.1
-  resolution: "trim-newlines@npm:4.1.1"
-  checksum: 5b09f8e329e8f33c1111ef26906332ba7ba7248cde3e26fc054bb3d69f2858bf5feedca9559c572ff91f33e52977c28e0d41c387df6a02a633cbb8c2d8238627
-  languageName: node
-  linkType: hard
-
 "ts-api-utils@npm:^1.0.1, ts-api-utils@npm:^1.3.0":
   version: 1.3.0
   resolution: "ts-api-utils@npm:1.3.0"
@@ -12881,20 +12428,13 @@ __metadata:
   languageName: node
   linkType: hard
 
-"type-fest@npm:^2.0.0, type-fest@npm:^2.13.0, type-fest@npm:^2.5.0, type-fest@npm:^2.5.1":
+"type-fest@npm:^2.13.0, type-fest@npm:^2.5.1":
   version: 2.19.0
   resolution: "type-fest@npm:2.19.0"
   checksum: a4ef07ece297c9fba78fc1bd6d85dff4472fe043ede98bd4710d2615d15776902b595abf62bd78339ed6278f021235fb28a96361f8be86ed754f778973a0d278
   languageName: node
   linkType: hard
 
-"type-fest@npm:^3.1.0":
-  version: 3.13.1
-  resolution: "type-fest@npm:3.13.1"
-  checksum: c06b0901d54391dc46de3802375f5579868949d71f93b425ce564e19a428a0d411ae8d8cb0e300d330071d86152c3ea86e744c3f2860a42a79585b6ec2fdae8e
-  languageName: node
-  linkType: hard
-
 "typed-array-buffer@npm:^1.0.2":
   version: 1.0.2
   resolution: "typed-array-buffer@npm:1.0.2"
@@ -13145,16 +12685,6 @@ __metadata:
   languageName: node
   linkType: hard
 
-"validate-npm-package-license@npm:^3.0.1, validate-npm-package-license@npm:^3.0.4":
-  version: 3.0.4
-  resolution: "validate-npm-package-license@npm:3.0.4"
-  dependencies:
-    spdx-correct: ^3.0.0
-    spdx-expression-parse: ^3.0.0
-  checksum: 35703ac889d419cf2aceef63daeadbe4e77227c39ab6287eeb6c1b36a746b364f50ba22e88591f5d017bc54685d8137bc2d328d0a896e4d3fd22093c0f32a9ad
-  languageName: node
-  linkType: hard
-
 "vscode-oniguruma@npm:^1.7.0":
   version: 1.7.0
   resolution: "vscode-oniguruma@npm:1.7.0"
@@ -13450,13 +12980,6 @@ __metadata:
   languageName: node
   linkType: hard
 
-"yocto-queue@npm:^1.0.0":
-  version: 1.1.1
-  resolution: "yocto-queue@npm:1.1.1"
-  checksum: f2e05b767ed3141e6372a80af9caa4715d60969227f38b1a4370d60bffe153c9c5b33a862905609afc9b375ec57cd40999810d20e5e10229a204e8bde7ef255c
-  languageName: node
-  linkType: hard
-
 "yoctocolors-cjs@npm:^2.1.1":
   version: 2.1.2
   resolution: "yoctocolors-cjs@npm:2.1.2"

From aada9b5b6f28bbfd42fd91d79a4da2f7c81a0003 Mon Sep 17 00:00:00 2001
From: isaac hershenson <ihershenson@hmc.edu>
Date: Thu, 29 Aug 2024 08:37:28 -0700
Subject: [PATCH 21/21] x

---
 .github/workflows/link_check.yml |   1 -
 package.json                     |   4 +
 scripts/check-links.cjs          |   2 +-
 yarn.lock                        | 497 ++++++++++++++++++++++++++++++-
 4 files changed, 492 insertions(+), 12 deletions(-)

diff --git a/.github/workflows/link_check.yml b/.github/workflows/link_check.yml
index c42b5a6e..4a910fff 100644
--- a/.github/workflows/link_check.yml
+++ b/.github/workflows/link_check.yml
@@ -45,7 +45,6 @@ jobs:
       - name: Install dependencies
         run: |
           yarn install --frozen-lockfile
-          npm install linkinator
 
       - name: Get changed files
         id: changed-files
diff --git a/package.json b/package.json
index 76591446..551fd0da 100644
--- a/package.json
+++ b/package.json
@@ -42,6 +42,7 @@
     "cheminfo-types": "^1.4.0",
     "d3": "^7.9.0",
     "esm-hook": "^0.1.4",
+    "linkinator": "^4.0.5",
     "markdown-link-check": "^3.10.3",
     "readline": "^1.3.0",
     "release-it": "^17.6.0",
@@ -61,5 +62,8 @@
   "publishConfig": {
     "access": "public",
     "registry": "https://registry.npmjs.org/"
+  },
+  "dependencies": {
+    "linkinator": "^6.1.1"
   }
 }
diff --git a/scripts/check-links.cjs b/scripts/check-links.cjs
index 1a6f9d69..de4f158c 100644
--- a/scripts/check-links.cjs
+++ b/scripts/check-links.cjs
@@ -19,7 +19,7 @@ function checkLinks() {
   for (const file of ipynbFiles) {
     console.log(`Checking links in ${file}`);
     try {
-      execSync(`npx linkinator ${file} ${ignorePatterns.map(pattern => `--skip "${pattern}"`).join(' ')}`, { stdio: 'inherit' });
+      execSync(`yarn linkinator ${file} ${ignorePatterns.map(pattern => `--skip "${pattern}"`).join(' ')}`, { stdio: 'inherit' });
     } catch (error) {
       console.error(`Error checking links in ${file}:`, error);
       process.exit(1);
diff --git a/yarn.lock b/yarn.lock
index 0790876e..216276de 100644
--- a/yarn.lock
+++ b/yarn.lock
@@ -3421,6 +3421,13 @@ __metadata:
   languageName: node
   linkType: hard
 
+"@types/minimist@npm:^1.2.2":
+  version: 1.2.5
+  resolution: "@types/minimist@npm:1.2.5"
+  checksum: 477047b606005058ab0263c4f58097136268007f320003c348794f74adedc3166ffc47c80ec3e94687787f2ab7f4e72c468223946e79892cf0fd9e25e9970a90
+  languageName: node
+  linkType: hard
+
 "@types/node-fetch@npm:^2.6.4":
   version: 2.6.11
   resolution: "@types/node-fetch@npm:2.6.11"
@@ -3467,6 +3474,13 @@ __metadata:
   languageName: node
   linkType: hard
 
+"@types/normalize-package-data@npm:^2.4.1":
+  version: 2.4.4
+  resolution: "@types/normalize-package-data@npm:2.4.4"
+  checksum: 65dff72b543997b7be8b0265eca7ace0e34b75c3e5fee31de11179d08fa7124a7a5587265d53d0409532ecb7f7fba662c2012807963e1f9b059653ec2c83ee05
+  languageName: node
+  linkType: hard
+
 "@types/resolve@npm:1.17.1":
   version: 1.17.1
   resolution: "@types/resolve@npm:1.17.1"
@@ -3782,6 +3796,15 @@ __metadata:
   languageName: node
   linkType: hard
 
+"agent-base@npm:6":
+  version: 6.0.2
+  resolution: "agent-base@npm:6.0.2"
+  dependencies:
+    debug: 4
+  checksum: f52b6872cc96fd5f622071b71ef200e01c7c4c454ee68bc9accca90c98cfb39f2810e3e9aa330435835eedc8c23f4f8a15267f67c6e245d2b33757575bdac49d
+  languageName: node
+  linkType: hard
+
 "agent-base@npm:^7.0.2, agent-base@npm:^7.1.0, agent-base@npm:^7.1.1":
   version: 7.1.1
   resolution: "agent-base@npm:7.1.1"
@@ -4004,6 +4027,13 @@ __metadata:
   languageName: node
   linkType: hard
 
+"arrify@npm:^1.0.1":
+  version: 1.0.1
+  resolution: "arrify@npm:1.0.1"
+  checksum: 745075dd4a4624ff0225c331dacb99be501a515d39bcb7c84d24660314a6ec28e68131b137e6f7e16318170842ce97538cd298fc4cd6b2cc798e0b957f2747e7
+  languageName: node
+  linkType: hard
+
 "ast-types@npm:^0.13.4":
   version: 0.13.4
   resolution: "ast-types@npm:0.13.4"
@@ -4440,6 +4470,18 @@ __metadata:
   languageName: node
   linkType: hard
 
+"camelcase-keys@npm:^8.0.2":
+  version: 8.0.2
+  resolution: "camelcase-keys@npm:8.0.2"
+  dependencies:
+    camelcase: ^7.0.0
+    map-obj: ^4.3.0
+    quick-lru: ^6.1.1
+    type-fest: ^2.13.0
+  checksum: 878fdaffa55737486101845232b2bc017fec95e06711d8a4133461cabf2432b55a59b20ff6afafce9b48a5629f25181bac3ecb10023032d3eb7cf3247c6e34f6
+  languageName: node
+  linkType: hard
+
 "camelcase@npm:6, camelcase@npm:^6.2.0":
   version: 6.3.0
   resolution: "camelcase@npm:6.3.0"
@@ -4454,7 +4496,7 @@ __metadata:
   languageName: node
   linkType: hard
 
-"camelcase@npm:^7.0.1":
+"camelcase@npm:^7.0.0, camelcase@npm:^7.0.1":
   version: 7.0.1
   resolution: "camelcase@npm:7.0.1"
   checksum: 86ab8f3ebf08bcdbe605a211a242f00ed30d8bfb77dab4ebb744dd36efbc84432d1c4adb28975ba87a1b8be40a80fbd1e60e2f06565315918fa7350011a26d3d
@@ -4468,7 +4510,7 @@ __metadata:
   languageName: node
   linkType: hard
 
-"chalk@npm:5.3.0, chalk@npm:^5.2.0, chalk@npm:^5.3.0":
+"chalk@npm:5.3.0, chalk@npm:^5.0.0, chalk@npm:^5.2.0, chalk@npm:^5.3.0":
   version: 5.3.0
   resolution: "chalk@npm:5.3.0"
   checksum: 623922e077b7d1e9dedaea6f8b9e9352921f8ae3afe739132e0e00c275971bdd331268183b2628cf4ab1727c45ea1f28d7e24ac23ce1db1eb653c414ca8a5a80
@@ -5292,13 +5334,30 @@ __metadata:
   languageName: node
   linkType: hard
 
-"decamelize@npm:1.2.0":
+"decamelize-keys@npm:^1.1.0":
+  version: 1.1.1
+  resolution: "decamelize-keys@npm:1.1.1"
+  dependencies:
+    decamelize: ^1.1.0
+    map-obj: ^1.0.0
+  checksum: fc645fe20b7bda2680bbf9481a3477257a7f9304b1691036092b97ab04c0ab53e3bf9fcc2d2ae382536568e402ec41fb11e1d4c3836a9abe2d813dd9ef4311e0
+  languageName: node
+  linkType: hard
+
+"decamelize@npm:1.2.0, decamelize@npm:^1.1.0":
   version: 1.2.0
   resolution: "decamelize@npm:1.2.0"
   checksum: ad8c51a7e7e0720c70ec2eeb1163b66da03e7616d7b98c9ef43cce2416395e84c1e9548dd94f5f6ffecfee9f8b94251fc57121a8b021f2ff2469b2bae247b8aa
   languageName: node
   linkType: hard
 
+"decamelize@npm:^6.0.0":
+  version: 6.0.0
+  resolution: "decamelize@npm:6.0.0"
+  checksum: 0066bc30798ec11e01adf0c19ad975caef86545d4bb6f70cfb90b7eb8e3cbf7974cf774ac2e6ea2586e4e07b1f654bfecc4e772c42128a79a89f8584fc546753
+  languageName: node
+  linkType: hard
+
 "decompress-response@npm:^6.0.0":
   version: 6.0.0
   resolution: "decompress-response@npm:6.0.0"
@@ -5512,7 +5571,7 @@ __metadata:
   languageName: node
   linkType: hard
 
-"domutils@npm:^3.0.1":
+"domutils@npm:^3.0.1, domutils@npm:^3.1.0":
   version: 3.1.0
   resolution: "domutils@npm:3.1.0"
   dependencies:
@@ -5623,7 +5682,7 @@ __metadata:
   languageName: node
   linkType: hard
 
-"entities@npm:^4.2.0, entities@npm:^4.4.0":
+"entities@npm:^4.2.0, entities@npm:^4.4.0, entities@npm:^4.5.0":
   version: 4.5.0
   resolution: "entities@npm:4.5.0"
   checksum: 853f8ebd5b425d350bffa97dd6958143179a5938352ccae092c62d1267c4e392a039be1bae7d51b6e4ffad25f51f9617531fedf5237f15df302ccfb452cbf2d7
@@ -6154,6 +6213,13 @@ __metadata:
   languageName: node
   linkType: hard
 
+"escape-html@npm:^1.0.3":
+  version: 1.0.3
+  resolution: "escape-html@npm:1.0.3"
+  checksum: 6213ca9ae00d0ab8bccb6d8d4e0a98e76237b2410302cf7df70aaa6591d509a2a37ce8998008cbecae8fc8ffaadf3fb0229535e6a145f3ce0b211d060decbb24
+  languageName: node
+  linkType: hard
+
 "escape-string-regexp@npm:^1.0.5":
   version: 1.0.5
   resolution: "escape-string-regexp@npm:1.0.5"
@@ -6561,6 +6627,13 @@ __metadata:
   languageName: node
   linkType: hard
 
+"extend@npm:^3.0.2":
+  version: 3.0.2
+  resolution: "extend@npm:3.0.2"
+  checksum: a50a8309ca65ea5d426382ff09f33586527882cf532931cb08ca786ea3146c0553310bda688710ff61d7668eba9f96b923fe1420cdf56a2c3eaf30fcab87b515
+  languageName: node
+  linkType: hard
+
 "external-editor@npm:^3.1.0":
   version: 3.1.0
   resolution: "external-editor@npm:3.1.0"
@@ -6704,6 +6777,16 @@ __metadata:
   languageName: node
   linkType: hard
 
+"find-up@npm:^6.3.0":
+  version: 6.3.0
+  resolution: "find-up@npm:6.3.0"
+  dependencies:
+    locate-path: ^7.1.0
+    path-exists: ^5.0.0
+  checksum: 9a21b7f9244a420e54c6df95b4f6fc3941efd3c3e5476f8274eb452f6a85706e7a6a90de71353ee4f091fcb4593271a6f92810a324ec542650398f928783c280
+  languageName: node
+  linkType: hard
+
 "flat-cache@npm:^3.0.4":
   version: 3.2.0
   resolution: "flat-cache@npm:3.2.0"
@@ -6899,6 +6982,18 @@ __metadata:
   languageName: node
   linkType: hard
 
+"gaxios@npm:^5.0.0":
+  version: 5.1.3
+  resolution: "gaxios@npm:5.1.3"
+  dependencies:
+    extend: ^3.0.2
+    https-proxy-agent: ^5.0.0
+    is-stream: ^2.0.0
+    node-fetch: ^2.6.9
+  checksum: 1cf72697715c64f6db1d6fa6e9243bb57ee14b0c758338a33790ecac2675d819a1fc0c51b2fab312d9bfe8201cc981c171b70ff60adcaaec881c5bc5610c42f1
+  languageName: node
+  linkType: hard
+
 "gensync@npm:^1.0.0-beta.2":
   version: 1.0.0-beta.2
   resolution: "gensync@npm:1.0.0-beta.2"
@@ -7084,6 +7179,18 @@ __metadata:
   languageName: node
   linkType: hard
 
+"glob@npm:^9.3.2":
+  version: 9.3.5
+  resolution: "glob@npm:9.3.5"
+  dependencies:
+    fs.realpath: ^1.0.0
+    minimatch: ^8.0.2
+    minipass: ^4.2.4
+    path-scurry: ^1.6.1
+  checksum: 94b093adbc591bc36b582f77927d1fb0dbf3ccc231828512b017601408be98d1fe798fc8c0b19c6f2d1a7660339c3502ce698de475e9d938ccbb69b47b647c84
+  languageName: node
+  linkType: hard
+
 "global-directory@npm:^4.0.1":
   version: 4.0.1
   resolution: "global-directory@npm:4.0.1"
@@ -7218,6 +7325,13 @@ __metadata:
   languageName: node
   linkType: hard
 
+"hard-rejection@npm:^2.1.0":
+  version: 2.1.0
+  resolution: "hard-rejection@npm:2.1.0"
+  checksum: 7baaf80a0c7fff4ca79687b4060113f1529589852152fa935e6787a2bc96211e784ad4588fb3048136ff8ffc9dfcf3ae385314a5b24db32de20bea0d1597f9dc
+  languageName: node
+  linkType: hard
+
 "has-bigints@npm:^1.0.1, has-bigints@npm:^1.0.2":
   version: 1.0.2
   resolution: "has-bigints@npm:1.0.2"
@@ -7280,6 +7394,24 @@ __metadata:
   languageName: node
   linkType: hard
 
+"hosted-git-info@npm:^4.0.1":
+  version: 4.1.0
+  resolution: "hosted-git-info@npm:4.1.0"
+  dependencies:
+    lru-cache: ^6.0.0
+  checksum: c3f87b3c2f7eb8c2748c8f49c0c2517c9a95f35d26f4bf54b2a8cba05d2e668f3753548b6ea366b18ec8dadb4e12066e19fa382a01496b0ffa0497eb23cbe461
+  languageName: node
+  linkType: hard
+
+"hosted-git-info@npm:^5.0.0":
+  version: 5.2.1
+  resolution: "hosted-git-info@npm:5.2.1"
+  dependencies:
+    lru-cache: ^7.5.1
+  checksum: fa35df185224adfd69141f3b2f8cc31f50e705a5ebb415ccfbfd055c5b94bd08d3e658edf1edad9e2ac7d81831ac7cf261f5d219b3adc8d744fb8cdacaaf2ead
+  languageName: node
+  linkType: hard
+
 "html-escaper@npm:^2.0.0":
   version: 2.0.2
   resolution: "html-escaper@npm:2.0.2"
@@ -7308,6 +7440,18 @@ __metadata:
   languageName: node
   linkType: hard
 
+"htmlparser2@npm:^9.0.0":
+  version: 9.1.0
+  resolution: "htmlparser2@npm:9.1.0"
+  dependencies:
+    domelementtype: ^2.3.0
+    domhandler: ^5.0.3
+    domutils: ^3.1.0
+    entities: ^4.5.0
+  checksum: e5f8d5193967e4a500226f37bdf2c0f858cecb39dde14d0439f24bf2c461a4342778740d988fbaba652b0e4cb6052f7f2e99e69fc1a329a86c629032bb76e7c8
+  languageName: node
+  linkType: hard
+
 "http-cache-semantics@npm:^4.1.1":
   version: 4.1.1
   resolution: "http-cache-semantics@npm:4.1.1"
@@ -7335,6 +7479,16 @@ __metadata:
   languageName: node
   linkType: hard
 
+"https-proxy-agent@npm:^5.0.0":
+  version: 5.0.1
+  resolution: "https-proxy-agent@npm:5.0.1"
+  dependencies:
+    agent-base: 6
+    debug: 4
+  checksum: 571fccdf38184f05943e12d37d6ce38197becdd69e58d03f43637f7fa1269cf303a7d228aa27e5b27bbd3af8f09fd938e1c91dcfefff2df7ba77c20ed8dfc765
+  languageName: node
+  linkType: hard
+
 "https-proxy-agent@npm:^7.0.1":
   version: 7.0.4
   resolution: "https-proxy-agent@npm:7.0.4"
@@ -7453,6 +7607,13 @@ __metadata:
   languageName: node
   linkType: hard
 
+"indent-string@npm:^5.0.0":
+  version: 5.0.0
+  resolution: "indent-string@npm:5.0.0"
+  checksum: e466c27b6373440e6d84fbc19e750219ce25865cb82d578e41a6053d727e5520dc5725217d6eb1cc76005a1bb1696a0f106d84ce7ebda3033b963a38583fb3b3
+  languageName: node
+  linkType: hard
+
 "inflight@npm:^1.0.4":
   version: 1.0.6
   resolution: "inflight@npm:1.0.6"
@@ -7623,6 +7784,15 @@ __metadata:
   languageName: node
   linkType: hard
 
+"is-core-module@npm:^2.5.0, is-core-module@npm:^2.8.1":
+  version: 2.15.1
+  resolution: "is-core-module@npm:2.15.1"
+  dependencies:
+    hasown: ^2.0.2
+  checksum: df134c168115690724b62018c37b2f5bba0d5745fa16960b329c5a00883a8bea6a5632fdb1e3efcce237c201826ba09f93197b7cd95577ea56b0df335be23633
+  languageName: node
+  linkType: hard
+
 "is-data-view@npm:^1.0.1":
   version: 1.0.1
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+"is-plain-obj@npm:^1.1.0":
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+  resolution: "is-plain-obj@npm:1.1.0"
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+  languageName: node
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+
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   resolution: "is-reference@npm:1.2.1"
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+"kind-of@npm:^6.0.3":
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+  resolution: "kind-of@npm:6.0.3"
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+  languageName: node
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+
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   resolution: "kleur@npm:3.0.3"
@@ -9252,6 +9436,7 @@ __metadata:
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     d3: ^7.9.0
     esm-hook: ^0.1.4
+    linkinator: ^4.0.5
     markdown-link-check: ^3.10.3
     readline: ^1.3.0
     release-it: ^17.6.0
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+  resolution: "linkinator@npm:4.1.3"
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+    marked: ^4.0.3
+    meow: ^11.0.0
+    mime: ^3.0.0
+    server-destroy: ^1.0.1
+    srcset: ^5.0.0
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+  languageName: node
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+
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   resolution: "locate-path@npm:5.0.0"
@@ -9402,6 +9607,15 @@ __metadata:
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+"locate-path@npm:^7.1.0":
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+  resolution: "locate-path@npm:7.2.0"
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+  languageName: node
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+
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   resolution: "lodash.capitalize@npm:4.2.1"
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+  resolution: "lru-cache@npm:6.0.0"
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+  languageName: node
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+  resolution: "map-obj@npm:1.0.1"
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+  languageName: node
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+  resolution: "map-obj@npm:4.3.0"
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+  languageName: node
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+
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   resolution: "markdown-link-check@npm:3.12.2"
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+  resolution: "meow@npm:11.0.0"
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+"mime@npm:^3.0.0":
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+  resolution: "mime@npm:3.0.0"
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+  languageName: node
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+
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+"minimatch@npm:^8.0.2":
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+  resolution: "minimatch@npm:8.0.4"
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+  languageName: node
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+
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   resolution: "minimatch@npm:9.0.4"
@@ -9740,6 +10022,17 @@ __metadata:
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+  resolution: "minimist-options@npm:4.1.0"
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+    is-plain-obj: ^1.1.0
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+  languageName: node
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+
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   resolution: "minimist@npm:1.2.8"
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+"minipass@npm:^4.2.4":
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+  resolution: "minipass@npm:4.2.8"
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+  languageName: node
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+  resolution: "normalize-package-data@npm:3.0.3"
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+    is-core-module: ^2.5.0
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+  languageName: node
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+  resolution: "normalize-package-data@npm:4.0.1"
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+    is-core-module: ^2.8.1
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+  languageName: node
+  linkType: hard
+
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+  resolution: "p-limit@npm:4.0.0"
+  dependencies:
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+  languageName: node
+  linkType: hard
+
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   resolution: "p-locate@npm:4.1.0"
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+"p-locate@npm:^6.0.0":
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+  resolution: "p-locate@npm:6.0.0"
+  dependencies:
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+  languageName: node
+  linkType: hard
+
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   resolution: "p-map@npm:4.0.0"
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+"path-exists@npm:^5.0.0":
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+  resolution: "path-exists@npm:5.0.0"
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+  languageName: node
+  linkType: hard
+
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   resolution: "path-is-absolute@npm:1.0.1"
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+"quick-lru@npm:^6.1.1":
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+  resolution: "quick-lru@npm:6.1.2"
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+  languageName: node
+  linkType: hard
+
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   resolution: "rc@npm:1.2.8"
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+"read-pkg-up@npm:^9.1.0":
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+  resolution: "read-pkg-up@npm:9.1.0"
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+  languageName: node
+  linkType: hard
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+"read-pkg@npm:^7.1.0":
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+  resolution: "read-pkg@npm:7.1.0"
+  dependencies:
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+  languageName: node
+  linkType: hard
+
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   resolution: "readable-stream@npm:3.6.2"
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+  version: 4.0.0
+  resolution: "redent@npm:4.0.0"
+  dependencies:
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+    strip-indent: ^4.0.0
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+
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   resolution: "regexp.prototype.flags@npm:1.5.2"
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+  resolution: "server-destroy@npm:1.0.1"
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+  languageName: node
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+
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   resolution: "set-function-length@npm:1.2.2"
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+"spdx-correct@npm:^3.0.0":
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+  resolution: "spdx-correct@npm:3.2.0"
+  dependencies:
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+  languageName: node
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+  resolution: "spdx-exceptions@npm:2.5.0"
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+  languageName: node
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+"spdx-expression-parse@npm:^3.0.0":
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+  resolution: "spdx-expression-parse@npm:3.0.1"
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+  languageName: node
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+  resolution: "spdx-license-ids@npm:3.0.20"
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+  languageName: node
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+
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   resolution: "split2@npm:4.2.0"
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+"srcset@npm:^5.0.0":
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+  resolution: "srcset@npm:5.0.1"
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+  languageName: node
+  linkType: hard
+
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   resolution: "ssri@npm:10.0.5"
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+  resolution: "strip-indent@npm:4.0.0"
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+
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   version: 2.19.0
   resolution: "type-fest@npm:2.19.0"
   checksum: a4ef07ece297c9fba78fc1bd6d85dff4472fe043ede98bd4710d2615d15776902b595abf62bd78339ed6278f021235fb28a96361f8be86ed754f778973a0d278
   languageName: node
   linkType: hard
 
+"type-fest@npm:^3.1.0":
+  version: 3.13.1
+  resolution: "type-fest@npm:3.13.1"
+  checksum: c06b0901d54391dc46de3802375f5579868949d71f93b425ce564e19a428a0d411ae8d8cb0e300d330071d86152c3ea86e744c3f2860a42a79585b6ec2fdae8e
+  languageName: node
+  linkType: hard
+
 "typed-array-buffer@npm:^1.0.2":
   version: 1.0.2
   resolution: "typed-array-buffer@npm:1.0.2"
@@ -12685,6 +13145,16 @@ __metadata:
   languageName: node
   linkType: hard
 
+"validate-npm-package-license@npm:^3.0.1, validate-npm-package-license@npm:^3.0.4":
+  version: 3.0.4
+  resolution: "validate-npm-package-license@npm:3.0.4"
+  dependencies:
+    spdx-correct: ^3.0.0
+    spdx-expression-parse: ^3.0.0
+  checksum: 35703ac889d419cf2aceef63daeadbe4e77227c39ab6287eeb6c1b36a746b364f50ba22e88591f5d017bc54685d8137bc2d328d0a896e4d3fd22093c0f32a9ad
+  languageName: node
+  linkType: hard
+
 "vscode-oniguruma@npm:^1.7.0":
   version: 1.7.0
   resolution: "vscode-oniguruma@npm:1.7.0"
@@ -12980,6 +13450,13 @@ __metadata:
   languageName: node
   linkType: hard
 
+"yocto-queue@npm:^1.0.0":
+  version: 1.1.1
+  resolution: "yocto-queue@npm:1.1.1"
+  checksum: f2e05b767ed3141e6372a80af9caa4715d60969227f38b1a4370d60bffe153c9c5b33a862905609afc9b375ec57cd40999810d20e5e10229a204e8bde7ef255c
+  languageName: node
+  linkType: hard
+
 "yoctocolors-cjs@npm:^2.1.1":
   version: 2.1.2
   resolution: "yoctocolors-cjs@npm:2.1.2"