Upgrade to Python 3.13 and update some packages (#669)

* spacy upgrade

* test python 3.14

* use solution from astral-sh/uv#11466

* upgrade uv

* add requirements

* downgrade becuse space

* try altair upgrade

* upgrade altair

* upgrade altair

* spacy

Author: linogaliana

.github/workflows/colab.yml

@@ -22,11 +22,13 @@ jobs:
         run: |
           sudo ./build/requirements.sh
       - name: Install the latest version of uv and set the python version to 3.13t
-        uses: astral-sh/setup-uv@v6
+        uses: astral-sh/setup-uv@v7
         with:
-          python-version: "3.12"
-          enable-cache: true
-          cache-dependency-glob: "uv.lock"
+          version: "latest"
+
+      - name: Restore environment
+        run: uv sync
+
       - uses: quarto-dev/quarto-actions/setup@v2
       - run: |
           quarto --version

.github/workflows/prod.yml

@@ -4,7 +4,7 @@ on:
   push:
     branches:
       - main
-      - update
+      - spacy
 
 jobs:
   pages:
@@ -27,10 +27,9 @@ jobs:
           sudo ./build/requirements.sh
 
       - name: Install the latest version of uv
-        uses: astral-sh/setup-uv@v6
+        uses: astral-sh/setup-uv@v7
         with:
           version: "latest"
-          python-version: 3.12
 
       - name: Restore environment
         run: uv sync
@@ -94,7 +93,6 @@ jobs:
         uses: astral-sh/setup-uv@v6
         with:
           version: "latest"
-          python-version: 3.12
 
       - name: Restore environment
         run: uv sync
@@ -140,7 +138,6 @@ jobs:
         uses: astral-sh/setup-uv@v6
         with:
           version: "latest"
-          python-version: 3.12
 
       - name: Restore environment
         run: uv sync

build/requirements.sh

@@ -6,5 +6,6 @@ apt-get update && \
     apt-get install -y git && \
     apt-get install build-essential -y && \
     apt-get install libmagic-dev -y && \
+    apt-get install libgdal-dev -y && \
     DEBIAN_FRONTEND=noninteractive apt install -y imagemagick && \
     rm -rf /var/lib/apt/lists/*

pyproject.toml

@@ -3,14 +3,15 @@ name = "python-datascientist"
 version = "0.1.0"
 description = "Source code for Lino Galiana's Python for data science course"
 readme = "README.md"
-requires-python = ">=3.12,<3.13"
+requires-python = ">=3.13,<3.14"
 dependencies = [
-    "altair==5.4.1",
+    "altair>=6.0.0",
     "black==24.8.0",
     "cartiflette",
     "contextily==1.6.2",
     "duckdb>=0.10.1",
     "folium>=0.19.6",
+    "gdal!=3.11.1",
     "geoplot==0.5.1",
     "graphviz==0.20.3",
     "great-tables>=0.12.0",
@@ -29,7 +30,7 @@ dependencies = [
     "plotly>=6.1.2",
     "plotnine>=0.15",
     "polars==1.8.2",
-    "pyarrow==17.0.0",
+    "pyarrow>=17.0.0",
     "pynsee==0.1.8",
     "python-dotenv==1.0.1",
     "python-frontmatter>=1.1.0",
@@ -38,15 +39,31 @@ dependencies = [
     "scikit-image==0.24.0",
     "scipy>=1.13.0",
     "selenium<4.39.0",
-    "spacy==3.8.4",
+    "spacy>=3.8.4",
     "webdriver-manager==4.0.2",
     "wordcloud==1.9.3",
 ]
 
 [tool.uv.sources]
 cartiflette = { git = "https://github.com/inseefrlab/cartiflette" }
+gdal = [
+  { index = "gdal-wheels", marker = "sys_platform == 'linux'" },
+  { index = "geospatial_wheels", marker = "sys_platform == 'win32'" },
+]
+
+[[tool.uv.index]]
+name = "geospatial_wheels"
+url = "https://nathanjmcdougall.github.io/geospatial-wheels-index/"
+explicit = true
+
+[[tool.uv.index]]
+name = "gdal-wheels"
+url = "https://gitlab.com/api/v4/projects/61637378/packages/pypi/simple"
+explicit = true
 
 [dependency-groups]
 dev = [
     "nb-clean>=4.0.1",
 ]
+
+