From eccc0802c24642bffececd3e858e5c7400d20397 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Sun, 1 Mar 2026 18:18:15 +0000
Subject: [PATCH] chore(deps): bump the minorandpatch group

Bumps the minorandpatch group in /preprocessing/nextclade with 5 updates:

| Package | From | To |
| --- | --- | --- |
| python | `3.14.2` | `3.14.3` |
| uv | `0.9.29` | `0.10.7` |
| pandas | `3.0.0` | `3.0.1` |
| ruff | `0.15.0` | `0.15.4` |
| diamond | `2.1.21` | `2.1.23` |


Updates `python` from 3.14.2 to 3.14.3

Updates `uv` from 0.9.29 to 0.10.7

Updates `pandas` from 3.0.0 to 3.0.1

Updates `ruff` from 0.15.0 to 0.15.4

Updates `diamond` from 2.1.21 to 2.1.23

---
updated-dependencies:
- dependency-name: python
  dependency-version: 3.14.3
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: minorandpatch
- dependency-name: uv
  dependency-version: 0.10.7
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: minorandpatch
- dependency-name: pandas
  dependency-version: 3.0.1
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: minorandpatch
- dependency-name: ruff
  dependency-version: 0.15.4
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: minorandpatch
- dependency-name: diamond
  dependency-version: 2.1.23
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: minorandpatch
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 preprocessing/nextclade/environment.yml | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/preprocessing/nextclade/environment.yml b/preprocessing/nextclade/environment.yml
index 00ea4e06e3..5b8b2dbcd1 100644
--- a/preprocessing/nextclade/environment.yml
+++ b/preprocessing/nextclade/environment.yml
@@ -4,19 +4,19 @@ channels:
   - bioconda
   - nodefaults
 dependencies:
-  - python=3.14.2
+  - python=3.14.3
   - biopython=1.86
   - dpath=2.2.0
   - nextclade=3.18.1
   - pip=25.2
-  - uv=0.9.29
+  - uv=0.10.7
   - PyYAML=6.0.3
   - pyjwt=2.11.0
   - python-dateutil=2.9.0.post0
   - pytz=2025.2
   - requests=2.32.5
-  - pandas=3.0.0
-  - ruff=0.15.0
+  - pandas=3.0.1
+  - ruff=0.15.4
   - types-PyYAML=6.0.12.20250915
   - types-requests=2.32.4.20260107
   - types-python-dateutil=2.9.0.20260124
@@ -24,4 +24,4 @@ dependencies:
   - unidecode=1.4.0
   - pytest=9.0.2
   - pydantic=2.12.5
-  - diamond=2.1.21
+  - diamond=2.1.23