From c4c3af9d904bd385f4720f667b59a4cfd78224e8 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Tue, 16 Jun 2026 07:58:56 +0000
Subject: [PATCH] chore(deps): bump the minorandpatch group in /ingest with 3
 updates

Bumps the minorandpatch group in /ingest with 3 updates: python, ncbi-datasets-cli and snakemake.


Updates `python` from 3.12.9 to 3.14.6

Updates `ncbi-datasets-cli` from 18.29.1 to 18.30.1

Updates `snakemake` from 9.22.0 to 9.23.0

---
updated-dependencies:
- dependency-name: python
  dependency-version: 3.14.6
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: minorandpatch
- dependency-name: ncbi-datasets-cli
  dependency-version: 18.30.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: minorandpatch
- dependency-name: snakemake
  dependency-version: 9.23.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: minorandpatch
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 ingest/environment.yml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/ingest/environment.yml b/ingest/environment.yml
index 8a647671aa..d5401ab1bb 100644
--- a/ingest/environment.yml
+++ b/ingest/environment.yml
@@ -5,14 +5,14 @@ channels:
   - nodefaults
 dependencies:
   # Core Python dependencies
-  - python=3.12.9 # Pinned to 3.12.x series, check for patch updates within 3.12
+  - python=3.14.6 # Pinned to 3.12.x series, check for patch updates within 3.12
   # Extra dependencies
   - biopython=1.87
   - click=8.4.1
   - curl=8.20.0
   - ijson=3.5.0
   - jsonlines=4.0.0
-  - ncbi-datasets-cli=18.29.1
+  - ncbi-datasets-cli=18.30.1
   - nextclade=3.21.2
   - orjsonl=1.0.0
   - pandas=2.3.3
@@ -22,6 +22,6 @@ dependencies:
   - requests=2.34.2
   - seqkit=2.13.0
   - snakefmt=2.0.1
-  - snakemake=9.22.0
+  - snakemake=9.23.0
   - unzip=6.0
   - pytest=9.0.3