pom.xml

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
	<modelVersion>4.0.0</modelVersion>
	<groupId>com.lifetech</groupId>
	<artifactId>bioseq</artifactId>
	<version>0.0.1</version>
	
      <repositories>
	<!--
	    This is the public Atlassian Maven proxy. It makes artifacts
	    available from the main Maven repository at ibiblio, Codehaus,
	    and all other dependencies necessary for building Atlassian
	    products (except Sun JARs we are not allowed to distribute
	    ourselves). This should have everything you need to build
	    a plugin; if something is missing, please open a JIRA issue
	    at http://developer.atlassian.com/jira/browse/CPDK.
	-->
	<repository>
	  <id>central</id>
	  <url>https://m2proxy.atlassian.com/repository/public</url>
	  <snapshots>
	    <enabled>true</enabled>
	    <updatePolicy>always</updatePolicy>
	    <checksumPolicy>fail</checksumPolicy>
	  </snapshots>
	  <releases>
	    <enabled>true</enabled>
	    <checksumPolicy>fail</checksumPolicy>
	  </releases>
	</repository>
	</repositories>
	
	<dependencies>
		<dependency>
			<groupId>org.apache.hadoop</groupId>
			<artifactId>hadoop-core</artifactId>
			<version>0.20.2</version>
		</dependency>

		<dependency>
			<groupId>org.apache.hadoop</groupId>
			<artifactId>hadoop-gpl-compression</artifactId>
			<version>0.2.0</version>
		</dependency>


		<dependency>
			<groupId>org.apache.hbase</groupId>
			<artifactId>hbase</artifactId>
			<version>0.20.6</version>
		</dependency>
		
		<dependency>
			<groupId>commons-lang</groupId>
			<artifactId>commons-lang</artifactId>
			<version>2.5</version>
		</dependency>
		<dependency>
			<groupId>junit</groupId>
			<artifactId>junit</artifactId>
			<version>4.5</version>
		</dependency>
		<dependency>
			<groupId>log4j</groupId>
			<artifactId>log4j</artifactId>
			<version>1.2.14</version>
		</dependency>
		<dependency>
			<groupId>org.mockito</groupId>
			<artifactId>mockito-all</artifactId>
			<version>1.8.5</version>
		</dependency>
		<dependency>
			<groupId>org.apache</groupId>
			<artifactId>zookeeper</artifactId>
			<version>3.2.2</version>
		</dependency>
		<dependency>
			<groupId>com.google.guava</groupId>
			<artifactId>guava</artifactId>
			<version>r07</version>
		</dependency>
		<dependency>
			<groupId>org.uncommons.maths</groupId>
			<artifactId>uncommons-maths</artifactId>
			<version>1.2.2</version>
		</dependency>
		<dependency>
			<groupId>commons-io</groupId>
			<artifactId>commons-io</artifactId>
			<version>1.4</version>
		</dependency>
		<dependency>
			<groupId>com.h2database</groupId>
			<artifactId>h2</artifactId>
			<version>1.2.137</version>
		</dependency>
	</dependencies>

	<build>
		<plugins>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-compiler-plugin</artifactId>
				<configuration>
					<source>1.6</source>
					<target>1.6</target>
				</configuration>
			</plugin>


			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-dependency-plugin</artifactId>
				<executions>
					<execution>
						<id>copy-dependencies</id>
						<phase>package</phase>
						<goals>
							<goal>copy-dependencies</goal>
						</goals>
						<configuration>
							<outputDirectory>${project.build.directory}/lib</outputDirectory>
							<overWriteReleases>false</overWriteReleases>
							<overWriteSnapshots>false</overWriteSnapshots>
							<overWriteIfNewer>true</overWriteIfNewer>
						</configuration>
					</execution>
				</executions>
			</plugin>



			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-jar-plugin</artifactId>
				<configuration>
					<archive>
						<manifest>
							<addClasspath>true</addClasspath>
							<classpathPrefix>lib/</classpathPrefix>
						</manifest>
					</archive>
				</configuration>
			</plugin>

		</plugins>
	</build>
</project>