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- <<<<<<< HEAD
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- #!/bin/bash
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- VERSION=0.0.1
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- BIN=`dirname $0`
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- BASE=$BIN/../
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- HADOOP=$HADOOP_HOME/bin/hadoop
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- if test ! -f $HADOOP; then
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- HADOOP=`which hadoop`
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- if test ! -f $HADOOP; then
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- echo Missing hadoop executable, please put it in the path or set the HADOOP_HOME variable.
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- exit
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- fi
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- fi
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-
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- $HADOOP jar $BASE/target/bioseq-$VERSION.jar com.lifetech.hadoop.bioseq.transform.QuantileFilter -libjars $BASE/target/lib/uncommons-maths-1.2.2.jar $*
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-
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- =======
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BIN=`dirname $0`
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source $BIN/common.sh
@@ -34,4 +17,3 @@ echo $BIN/seqfile2fasta -i $FILTERED -o $FILTERED-fasta
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echo "$HADOOP dfs -cat $FILTERED-fasta/fasta* > $OUTPUT.fasta"
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echo "$HADOOP dfs -cat $FILTERED-fasta/qual* > $OUTPUT.qual"
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- >>>>>>> 96d0740ff5d04e74282d3ea20f8e91523779d031
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