thymusatlastools/NAMESPACE at master · maehrlab/thymusatlastools · GitHub

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# Generated by roxygen2: do not edit by hand

export()
export(AvailableData)
export(Capitalize)
export(ClusterBag)
export(ClusterBagStability)
export(DESummaryFast)
export(ExploreIteratively)
export(FetchDataZeroPad)
export(FillNA)
export(FindMarkersFlex)
export(KMeansGapStat)
export(ProjectCells)
export(RefineVariableGenes)
export(SanitizeGenes)
export(SeuratMerge)
export(SeuratPie)
export(SubsetDataFlex)
export(TACS)
export(add_cc_score)
export(add_maehrlab_metadata)
export(add_pseudotime_to_seurat)
export(add_quadrants)
export(add_rp_mt_percentage)
export(add_rp_percentage)
export(add_tcr)
export(aggregate_nice)
export(align_embedding_to_reference)
export(annot_ident_plot)
export(call_monocle_on_seurat)
export(check_xist_all)
export(check_xist_pure)
export(classify_mlr)
export(cluster_summary)
export(cluster_wrapper)
export(collapse_by_name)
export(compare_views)
export(convert_species_dge)
export(custom_feature_plot)
export(dendrogram_merge_points)
export(deseuratify_raw_data)
export(dge_merge_list)
export(dir.create.nice)
export(div_by_max)
export(div_by_sum)
export(do_dim_red)
export(do_enrichr)
export(down_idx)
export(expected_doublet_counts)
export(explore_embeddings)
export(export_from_seurat)
export(facet_plot_gene_clusters)
export(faceted_tsne)
export(factor_numeric)
export(get_cTEC_mTEC_genes)
export(get_macosko_cc_genes)
export(get_metadata)
export(get_mouse_tfs)
export(get_ortholog)
export(get_ortholog_table)
export(get_poised_genes)
export(get_preimage)
export(get_ramilowski)
export(get_rene_markers)
export(get_similar_genes)
export(harmonize_species)
export(has_ortholog)
export(heatmap_gene_clusters)
export(is_mt)
export(is_rp)
export(knn_classifier)
export(load_thymus_profiling_data)
export(make_heatmap_for_table)
export(master_pt)
export(matrixify_preserving_rownames)
export(misc_summary_info)
export(na2zero)
export(normalize_cpx_amt)
export(outlier_labeled_scatterplot)
export(percentify)
export(plot_dendro_with_rect)
export(prop_nz)
export(remove_TEC_doublets)
export(remove_species_specific_genes)
export(replace_with_int_rank)
export(save_complexity_plot)
export(save_depth_stats)
export(save_feature_plots)
export(save_marker_table)
export(screen_receptor_ligand)
export(seuratify_thy_data)
export(smooth_and_cluster_genes)
export(standardize)
export(strip_suffix)
export(strsplit_drop)
export(text2file)
export(time_series)
export(time_series_save)
export(top_genes_by_pc)
export(top_n_preserve_rownames)
export(train_save_classifier)
export(tsne_colored)
export(var_gene_select)
export(vectorize_preserving_rownames)
export(wheel_plot)
import(Seurat)
import(ggplot2)
import(magrittr)